NCBI Conserved Domain Search

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Conserved domains on [gi\|117928473\|ref\|YP_873024.1\|]
PAS/PAC sensor signal transduction histidine kinase [Acidothermus cellulolyticus 11B]

Graphical summary show options »	Show site features Horizontal zoom: ×	?



List of domain hits		?

References:

Marchler-Bauer A et al. (2009), "CDD: specific functional annotation with the Conserved Domain Database.", Nucleic Acids Res.37(D)205-10.

Marchler-Bauer A, Bryant SH (2004), "CD-Search: protein domain annotations on the fly.", Nucleic Acids Res.32(W)327-331.

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of the residues that compose this conserved feature have been mapped to the query sequence.

Click on the triangle to view details about the feature, including a multiple sequence alignment of your query sequence and the protein sequences used to curate the domain model, where hash marks (#) above the aligned sequences show the location of the conserved feature residues.

The thumbnail image, if present, provides an approximate view of the feature's location in 3 dimensions. Click on the triangle for interactive 3D structure viewing options.

This image shows a graphical summary of conserved domains identified on the query sequence. The Show Concise/Full Display button at the top of the page can be used to select the desired level of detail: only top scoring hits (labeled illustration) or all hits (labeled illustration).
Domains are color coded according to superfamilies to which they have been assigned. Hits with scores that pass a domain-specific threshold (specific hits) are drawn in bright colors. Others (non-specific hits) and superfamily placeholders are drawn in pastel colors.
if a domain or superfamily has been annotated with functional sites (conserved features), they are mapped to the query sequence and indicated through sets of triangles with the same color and shade of the domain or superfamily that provides the annotation.
Mouse over the colored bars or triangles to see descriptions of the domains and features. click on the bars or triangles to view your query sequence embedded in a multiple sequence alignment of the proteins used to develop the corresponding domain model.

The table lists conserved domains identified on the query sequence. Click on the plus sign (+) on the left to display full descriptions, alignments, and scores. Click on the PssmId to view the multiple sequence alignment of the proteins used to develop the corresponding domain model.

To view your query sequence embedded in that multiple sequence alignment, click on the colored bars in the Graphical Summary portion of the search results page, or click on the triangles, if present, that represent functional sites (conserved features) mapped to the query sequence.

Concise Display shows only the best scoring domain model, in each hit category listed below except non-specific hits, for each region on the query sequence. (labeled illustration)
Full Display shows all domain models, in each hit category below, that meet or exceed the RPS-BLAST threshold for statistical significance. (labeled illustration)
Four types of hits can be shown, as available, for each region on the query sequence:

specific hits meet or exceed a domain-specific e-value threshold (illustrated example) and represent a very high confidence that the query sequence belongs to the same protein family as the sequences use to create the domain model
non-specific hits meet or exceed the RPS-BLAST threshold for statistical significance (default E-value cutoff of 0.01, or an E-value selected by user via the advanced search options)
the domain superfamily to which the specific and non-specific hits belong
multi-domain models that were computationally detected and are likely to contain multiple single domains

The CD-Search help document provides more detail about the tool and its features.

Retrieve proteins that contain one or more of the domains present in the query sequence, using the Conserved Domain Architecture Retrieval Tool (CDART).

Modify your query to search against a different database and/or use advanced search options

28956

cd00075

HATPase_c

Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins

Histidine kinase-like ATPases; This family includes several ATP-binding proteins for...

true

false

true

103

1e-21

98.85

100.00

4,228,0,16,244,19,11,256,30,32,288,65,38

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 229 LDQVLANLVDNAIRHG---RGTVTVHVAPApGEGVDITVTDQGDGVPPEVRPLIFRRFWRAGR---YGGTGLGLYIVKGL 302
cd00075        1 LQQVLLNLLSNAIKHTpegGGRITISVERD-GDHLEIRVEDNGPGIPEEDLERIFERFSDGSRsrkGGGTGLGLSIVKKL 79

                         90       100
                 ....*....|....*....|....
gi 117928473 303 VEAHGGTVSVDDAPGGGALFRVRF 326
cd00075       80 VELHGGRIEVESEPGGGTTFTITL 103

cl00075

140416

HATPase_c

Histidine kinase-like ATPases; This family includes several ATP-binding proteins for...

119399

cd00082

HisKA

Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase. They subsequently transfer the phosphoryl group to the Asp acceptor residue of a response regulator protein. Two-component signalling systems, consisting of a histidine protein kinase that senses a signal input and a response regulator that mediates the output, are ancient and evolutionarily conserved signaling mechanisms in prokaryotes and eukaryotes.

Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are...

true

false

true

1e-09

59.15

90.77

3,114,6,19,134,25,17,152,42,23

                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 117928473 115 LISTVAHELRSPLTSVKGFtATLLHKWDRFTDEQRKLmLETVNADADRVTRLIGELLDVSR 175
cd00082        7 FLANVSHELRTPLTAIRGA-LELLEEELLDDEEQREY-LERIREEAERLLRLINDLLDLSR 65

cl00080

140419

HisKA

Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are...

128669

smart00387

HATPase_c

Histidine kinase-like ATPases

false

111

2e-27

118.52

97.30

4,224,1,20,244,23,11,256,34,31,287,69,40

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 225 DPDKLDQVLANLVDNAIRHG--RGTVTVHVAPApGEGVDITVTDQGDGVPPEVRPLIFRRFWRAG----RYGGTGLGLYI 298
smart00387     2 DPDRLRQVLSNLLDNAIKYTpeGGRITVTLERD-GDHLEITVEDNGPGIPPEDLEKIFEPFFRTDgrsrKIGGTGLGLSI 80

                         90       100
                 ....*....|....*....|....*....
gi 117928473 299 VKGLVEAHGGTVSVDDAPGGGALFRVRFP 327
smart00387    81 VKKLVELHGGEISVESEPGGGTTFTITLP 109

cl00075

140416

HATPase_c

Histidine kinase-like ATPases; This family includes several ATP-binding proteins for...

-1

111420

pfam02518

HATPase_c

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase

false

111

7e-26

112.81

97.30

4,224,1,20,244,23,16,261,39,26,287,69,40

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 225 DPDKLDQVLANLVDNAIRHG--RGTVTVHVAPAPGEGVdITVTDQGDGVPPEVRPLIFRRFWRAG----RYGGTGLGLYI 298
pfam02518      2 DEDRLRQVLSNLLDNAIKHApaGGEITVTLEREGGRLR-ITVEDNGPGIPPEDLEKIFEPFYRDGsdsrKVGGTGLGLSI 80

                         90       100
                 ....*....|....*....|....*....
gi 117928473 299 VKGLVEAHGGTVSVDDAPGGGALFRVRFP 327
pfam02518     81 VKKLVELHGGTITVESEPGGGTTFTLTLP 109

cl00075

140416

HATPase_c

Histidine kinase-like ATPases; This family includes several ATP-binding proteins for...

-1

128670

smart00388

HisKA

His Kinase A (phosphoacceptor) domain

false

9e-10

59.51

92.42

3,114,4,25,141,29,10,152,39,26

                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 117928473 115 LISTVAHELRSPLTSVKGFTATLLHkwDRFTDEQRKLmLETVNADADRVTRLIGELLDVSRIDA 178
smart00388     5 FLANLSHELRTPLTAIRGYLELLED--TELSEEQREY-LETILRSAERLLRLINDLLDLSRIEA 65

cl00080

140419

HisKA

Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are...

-1

109563

pfam00512

HisKA

His Kinase A (phosphoacceptor) domain

false

1e-09

59.11

92.42

4,114,4,24,139,28,4,144,32,7,152,39,26

                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 117928473 115 LISTVAHELRSPLTSVKGFTATLLhKWDRfTDEQRKLmLETVNADADRVTRLIGELLDVSRIDA 178
pfam00512      5 FLANLSHELRTPLTAIRGYLELLL-DTEL-SEEQREY-LETILRSAERLLRLINDLLDLSRIEA 65

cl00080

140419

HisKA

Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are...

-1

128402

smart00091

PAS

PAS domain

true

false

0.002

38.15

74.63

1,9,4,50

                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 117928473  10 TAFDLLPDGLLIADDAGRVVLLNEMGARLLQCSADAALGRDFRSVLPLVD 59
smart00091     5 AILESLPDGIFVLDLDGRILYANPAAEELLGYSPEELIGKSLLELIHPED 54

cl02459

141436

PAS

PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction.

PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most...

-1

32387

COG2205

KdpD

Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]

false

true

false

890

7e-37

149.63

24.94

4,114,662,90,205,752,47,252,800,38,290,841,43

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 115 LISTVAHELRSPLTSVKGFTATLLHKWDRFTDEQRKLMLETVNADADRVTRLIGELLDVSRIDADRLELHRQVVDVGAAA 194
COG2205      663 LLASISHDLRTPLTAIMGAAETLLLDGEALSPEDRAELLSSIREESERLTRLVTNLLDMTRLQSGGVNLKLDWVLVEEVV 742

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 195 ARVVAGRVAAgESPQRFSVIVDGELPEVWLDPDKLDQVLANLVDNAIRHGRGTVTVHV-APAPGEGVDITVTDQGDGVPP 273
COG2205      743 GEALQRLRKR-FTGHKIVVSVPVDLPLIHVDSPLIEQVLINLLENALKYAPPGSEIRInAGVERENVVFSVIDEGPGIPE 821

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 117928473 274 EVRPLIFRRFWRAGRYG---GTGLGLYIVKGLVEAHGGTVSVDDAPGGGALFRVRFPAGTPPF 333
COG2205      822 GELERIFDKFYRGNKESatrGVGLGLAICRGIVEAHGGTISAENNPGGGAIFVFTLPVEEDPP 884

-1

30987

COG0642

BaeS

Signal transduction histidine kinase [Signal transduction mechanisms]

false

true

false

336

6e-34

139.92

64.29

6,114,117,23,141,140,37,178,178,67,245,246,10,256,256,30,286,287,46

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 115 LISTVAHELRSPLTSVKGFTATLlhkwDRFTDEQRKLMLETVNADADRVTRLIGELLDVSRIDA-DRLELHRQVVDVGAA 193
COG0642      118 FLANISHELRTPLTAIRGLLELL----LEGLLDPQRELLEIIEEEAERLLRLVNDLLDLSRLEAgTKLKLLLELVDLAEL 193

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 194 AARVVAGRVAAGESPQRFSVIVDGELPEVWLDPDKLDQVLANLVDNAIRHGR-GTVTVHVAPApGEGVDITVTDQGDGVP 272
COG0642      194 LEEVVRLLAPLAQEKGIELAVDLPELPYVLGDPERLRQVLVNLLSNAIKYTPgGEITISVRQD-DEQVTISVEDTGPGIP 272

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 117928473 273 PEVRPLIFRRFWRA-GRYGGTGLGLYIVKGLVEAHGGTVSVDDAPGGGALFRVRFPAGTPP 332
COG0642      273 EEELERIFEPFFRTdKSRSGTGLGLAIVKRIVELHGGTISVESEPGKGTTFTIRLPLAPAA 333

-1

132011

TIGR02966

phoR_proteo

phosphate regulon sensor kinase PhoR

true

false

333

2e-33

137.73

95.80

11,14,14,41,55,58,5,60,64,14,74,80,15,93,95,57,151,152,33,184,186,33,218,219,27,245,248,12,258,260,30,288,295,38

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473  15 LPDGLLIADDAGRVVLLNEMGARLLQCSADAALGRDFRSVL---PLVDT-AGRDCERRLLLPDG--RELLVTARFVREAR 88
TIGR02966     15 LPDAVVVLDEEGQIEWCNPAAERLLGLRWPDDLGQRITNLIrhpEFVEYlAAGRFSEPLELPSPinSERVLEIRIAPYGE 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473  89 GapvsRLVVSFRAAAARERAERDRAELISTVAHELRSPLTSVKGFTATLLHKWDRFTDEQRKlMLETVNADADRVTRLIG 168
TIGR02966     95 E----QKLLVARDVTRLRRLEQMRRDFVANVSHELRTPLTVLRGYLETLADGPDEDPEEWNR-ALEIMLEQSQRMQSLVE 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 169 ELLDVSRIDADRLELH-RQVVDVGAAAARVVAGRVAAGESPQRFSVIVDGeLPEVWLDPDKLDQVLANLVDNAIRHGR-- 245
TIGR02966    170 DLLTLSRLESAASPLEdEPVDMPALLDHLRDEAEALSQGKNHQITFEIDG-GVDVLGDEDELRSAFSNLVSNAIKYTPeg 248

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 246 GTVTVHVAPAPGeGVDITVTDQGDGVPPEVRPLIFRRFWRAGR-----YGGTGLGLYIVKGLVEAHGGTVSVDDAPGGGA 320
TIGR02966    249 GTITVRWRRDGG-GAEFSVTDTGIGIAPEHLPRLTERFYRVDKsrsrdTGGTGLGLAIVKHVLSRHHARLEIESELGKGS 327


                 ....*.
gi 117928473 321 LFRVRF 326
TIGR02966    328 TFSFIF 333

-1

34607

COG5002

VicK

Signal transduction histidine kinase [Signal transduction mechanisms]

false

true

false

459

4e-33

137.38

71.02

11,16,121,44,60,166,5,65,174,6,71,183,12,83,197,6,90,203,67,158,270,65,223,337,22,245,361,10,256,371,29,285,405,42

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473  17 DGLLIADDAGRVVLLNEMGARLLQCSADAALGRDFRSVLPLVDT-AGRDC---ERRLLL---PDGRELLVTARF--VREA 87
COG5002      122 DGVIATDRRGKIILINKPALKMLGVSKEDALGRSILELLKIEDTyTFEDLvekNDSLLLdssDEEEGYVLRVNFsvIQRE 201

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473  88 RGaPVSRLVVSFRAAAARERAERDRAELISTVAHELRSPLTSVKGFTATLLHKWDRFTDEQRKLMLETVNaDADRVTRLI 167
COG5002      202 SG-FISGLIAVLHDVTEQEKVERERREFVANVSHELRTPLTSMKSYLEALEEGAWEDKEIAPRFLRVTLN-ETERMIRLV 279

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 168 GELLDVSRIDADRLELHRQVVDVGAAAARVVAGRVAAGESPQRFSVIVDGELPEVW--LDPDKLDQVLANLVDNAIRHGR 245
COG5002      280 NDLLQLSRMDNARYQLNKEWINFTAFLNEIINRFEMILKKETIARFVRDIPKQDIWveIDPDKMTQVLDNIISNALKYSP 359

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 246 --GTVTVHVAPApGEGVDITVTDQGDGVPPEVRPLIFRRFWR-----AGRYGGTGLGLYIVKGLVEAHGGTVSVDDAPGG 318
COG5002      360 dgGRITVSVKQR-ETWVEISISDQGLGIPKEDLEKIFDRFYRvdkarSRKMGGTGLGLAIAKEIVQAHGGRIWAESEEGK 438


                 ....*....
gi 117928473 319 GALFRVRFP 327
COG5002      439 GTTFSFTLP 447

-1

138539

PRK11360

sensory histidine kinase AtoS; Provisional

false

true

false

607

2e-27

118.25

53.87

9,16,271,39,55,317,15,70,337,5,75,343,22,97,373,45,145,418,36,184,454,58,242,514,44,287,558,40

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473  17 DGLLIADDAGRVVLLNEMGARLLQCSADAALGRDFRSVL-------PLVDTAGRDCERRLL-----LPDGR-ELLVTARF 83
PRK11360     272 DGIIAIDRQGDITTMNPAAEVITGYQRHELVGQPYSMLFdntqfysPVLDTLEHGTEHVALeisfpGRDRTiELSVTTSR 351

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473  84 VREARGAPVSRLVV--------SFRAAAARERAERDRAELISTVAHELRSPLTSVKGFTATLLHKWDrftDEQRKLMLET 155
PRK11360     352 LHDTHGEMIGAVVIfsdltarkRLQRRMARAERLAALGELMAGVAHEIRNPLTAIRGYVQILRQQTS---DPIHQEYLSV 428

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 156 VNADADRVTRLIGELLDVSRIDADRLelhRQVVDVGAAAARVVAGRVAAGESPQRFSVIVDGELPEVWLDPDKLDQVLAN 235
PRK11360     429 VLREVDSLNKVIQQLLEFSRPRHSQW---QQVSLNALVEEVLVLVQTAGVQARVDFITELDNELPPINADRELLKQVLLN 505

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 236 LVDNAIR--HGRGTVTVHVAPAPGEGVDITVTDQGDGVPPEVRPLIFRRFWRAgRYGGTGLGLYIVKGLVEAHGGTVSVD 313
PRK11360     506 ILINAVQaiSARGKIRIRTWQYSDSQQAISIEDNGCGIDLELLKKIFDPFFTT-KASGTGLGLALSQRIINAHQGDIRVA 584

                        330
                 ....*....|....
gi 117928473 314 DAPGGGALFRVRFP 327
PRK11360     585 SLPGYGTTFTLILP 598

-1

132001

TIGR02956

TMAO_torS

TMAO reductase sytem sensor TorS

false

true

false

968

5e-26

113.33

22.21

8,115,467,17,133,484,7,141,491,9,151,500,32,183,533,41,224,575,19,243,595,43,286,641,41

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 116 ISTVAHELRSPLTSVKGfTATLLHKwDRFTDEQRKlMLETVNADADRVTRLIGELLDVSRIDADRLEL-HRQVVDVGAAA 194
TIGR02956    468 LATMSHEIRTPLNGILG-TLELLGD-TGLTSQQQQ-YLQVINRSGESLLDILNDILDYSKIEAGHLSIsPRPFDLNALLD 544

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 195 ARVVAGRVAAGESPQRFSVIVDGELPEVWL-DPDKLDQVLANLVDNAIRH-GRGTVTVHVAPAPGEGVDITVTDQGDGVP 272
TIGR02956    545 DVHHLMVSRAQLKGIQLRLNIPEQLPNWWQgDGPRIRQVLINLVGNAIKFtDRGSVVLRVSLNDDSSLLFEVEDTGCGIA 624

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 117928473 273 PEVRPLIFRRFWRA---GRYGGTGLGLYIVKGLVEAHGGTVSVDDAPGGGALFRVRFP 327
TIGR02956    625 EEEQATLFDAFTQAdgrRRSGGTGLGLAISQRLVEAMDGELGVESELGVGSCFWFTLP 682

-1

130453

TIGR01386

cztS_silS_copS

heavy metal sensor kinase

false

true

false

457

2e-23

104.77

46.39

9,116,245,24,141,269,10,152,279,55,208,334,11,220,345,24,244,371,14,259,385,27,286,417,26,313,443,14

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 117 STVAHELRSPLTSVKGFTATLLHKwDRFTDEQRKLmLETVNADADRVTRLIGELLDVSRIDADRLELHRQVVDVGAAAAR 196
TIGR01386    246 ADLAHELRTPLTNLLGQTQVALSQ-PRTGEEYREV-LESNLEELERLSRMVSDMLFLARADNGQLALERVRLDLAAELAK 323

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 197 VVAGRVAAGESpQRFSVIVDGELpEVWLDPDKLDQVLANLVDNAIRHG--RGTVTVHVAPAPGEgVDITVTDQGDGVPPE 274
TIGR01386    324 VAEYFEPLAEE-RGVRIRVEGEG-LVRGDPQMFRRAISNLLSNALRHTpdGGTITVRIERRSDE-VRVSVSNPGPGIPPE 400

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 117928473 275 VRPLIFRRFWRA-----GRYGGTGLGLYIVKGLVEAHGGTVSVdDAPGGGALFRVRFP 327
TIGR01386    401 HLSRLFDRFYRVdparsNSGEGTGLGLAIVRSIMEAHGGRASA-ESPDGKTRFILRFP 457

-1

138021

PRK10604

sensor protein RstB; Provisional

false

true

false

433

6e-23

103.23

48.96

7,114,214,23,141,237,8,153,245,51,206,296,17,223,314,30,254,344,33,287,382,44

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 115 LISTVAHELRSPLTSVKGFTATLlhkwDRFTDEQRklmlETVNADADRVTRLIGELLDVSRIDADRLELHRQVVDVGAAA 194
PRK10604     215 LIDGIAHELRTPLVRLRYRLEMS----DNLSAAES----QALNRDIGQLEALIEELLTYARLDRPQNELHLSEPDLPAWL 286

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 195 ARVVAGRVAAgeSPQRFSVIVDGELPEVW-LDPDKLDQVLANLVDNAIRHGRGTVTVHVApAPGEGVDITVTDQGDGVPP 273
PRK10604     287 STHLADIQAV--TPEKTVRLKTPHQGDYGaLDMRLMERVLDNLLNNALRYSHSTVETSLL-LDGDQATLIVEDDGPGIAP 363

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 117928473 274 EVRPLIFRRFWRAG-----RYGGTGLGLYIVKGLVEAHGGTVSVDDAPGGGALFRVRFPAGTP 331
PRK10604     364 EERERIFEPFVRLDpsrdrATGGCGLGLAIVHSIALAMGGSVNCDTSELGGARFSFSWPVWHN 426

-1

138403

PRK11100

sensory histidine kinase CreC; Provisional

false

true

false

475

1e-22

102.24

44.84

7,117,261,15,133,276,6,141,282,37,179,319,62,241,383,14,256,397,35,291,436,38

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 118 TVAHELRSPLTSVKGfTATLLHkwDRFTDEQRKLMLETVNADADRVTRLIGELLDVSRIDAdRLELHRQVVDVGAAAARV 197
PRK11100     262 TLTHELKSPLAAIRG-AAELLQ--EDPPPEDRQRFTGNILAQSARLQQLIDRLLELARLEQ-RQELEVLEPVALAALLEE 337

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 198 VAGRVAAGESPQRFSVIVDGELPEVWLDPDKLDQVLANLVDNAI--RHGRGTVTVHVAPApGEGVDITVTDQGDGVPPEV 275
PRK11100     338 LVEAREAQAAAKGITLRLRPDDAAVLGDPFLLRQALGNLLDNAIdfTPEGGTITLSAERD-GEQVALSVEDSGPGIPDYA 416

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 117928473 276 RPLIFRRFWRAGRYGG----TGLGLYIVKGLVEAHGGTVSVDDAPGGGALFRVRFPAG 329
PRK11100     417 LPRIFERFYSLPRPANgrksTGLGLAFVREVARLHGGEVTLRNRPEGGVLATLTLPRH 474

-1

137849

PRK10364

sensor protein ZraS; Provisional

false

true

false

455

3e-22

101.16

45.71

8,114,240,35,151,275,24,175,307,9,193,316,20,215,336,26,241,366,8,252,374,34,287,408,40

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 115 LISTVAHELRSPLTSVKGFTATLLHKWDRFTDEQRklMLETVNADADRVTRLIGELLDVSR--------IDADRLELHrq 186
PRK10364     241 LAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQ--LAQVMAKEADRLNRVVSELLELVKpthlalqaVDLNTLINH-- 316

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 187 vvdvgaaAARVVAGRVAAGESPQRFSVivDGELPEVWLDPDKLDQVLANLVDNAI----RHGRGTVTvhvAPAPGEGVDI 262
PRK10364     317 -------SLQLVSQDANSREIQLRFTA--NDTLPEIQADPDRLTQVLLNLYLNAIqaigQHGVISVT---ASESGAGVKI 384

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 117928473 263 TVTDQGDGVPPEVRPLIFRRFWRAgRYGGTGLGLYIVKGLVEAHGGTVSVDDAPGGGALFRVRFP 327
PRK10364     385 SVTDSGKGIAADQLEAIFTPYFTT-KAEGTGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLWLP 448

-1

137312

PRK09470

cpxA

two-component sensor protein; Provisional

false

true

false

461

4e-22

100.44

45.77

7,114,245,32,152,277,27,180,304,26,208,330,16,224,349,29,254,378,33,287,416,40

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 115 LISTVAHELRSPLTSVKGFTATLLHKWDRFTDeqrklmLETVNADADRVTRLIGELLDVSRIDADrLELHRQVVDVGAAA 194
PRK09470     246 LLSDISHELRTPLTRLQLATALLRRRQGESKE------LERIETEAQRLDSMINDLLVLSRNQVK-NHLVRETIKANSLW 318

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 195 ARVVAGRVAAGEspQRFSVIVDGELPEVWL---DPDKLDQVLANLVDNAIRHGRGTVTVHVApAPGEGVDITVTDQGDGV 271
PRK09470     319 SEVLEDAAFEAE--QMGKSLTVNQPPGPWPingNPNALESALENIVRNALRYSHTKIEVGFS-VDKDGLTITVDDDGPGV 395

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 117928473 272 PPEVRPLIFRRFWRAG-----RYGGTGLGLYIVKGLVEAHGGTVSVDDAPGGGALFRVRFP 327
PRK09470     396 PEEEREQIFRPFYRVDeardrESGGTGLGLAIVENAIQQHRGWVKAEDSPLGGLRLTIWLP 456

-1

33974

COG4251

Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]

Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal...

false

true

false

750

6e-22

100.02

29.07

6,114,526,63,179,589,35,216,624,28,244,653,8,252,662,35,287,700,44

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 115 LISTVAHELRSPLTSVKGFTATLLHKWDRFTDEQRKLMLETVNADADRVTRLIGELLDVSRIDadRLELHRQVVDVGAAA 194
COG4251      527 FAYVASHDLQEPLRQISNYAQLLSERYSDALDEEAKEFITFISRLTSLMQQLIDDLLTYSKLG--LTEAPLQPTDVQKVV 604

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 195 ARVVAGRVAAGESPQRFSVIvdGELPEVWLDPDKLDQVLANLVDNAIRHG-RGTVTVHV-APAPGEGVDITVTDQGDGVP 272
COG4251      605 DKVLLELSQRIADTGAEIRI--APLPVVAADATQLGQVFQNLIANAIKFGgPENPDIEIsAERQEDEWTFSVRDNGIGID 682

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 117928473 273 PEVRPLIFRRFWRAG---RYGGTGLGLYIVKGLVEAHGGTVSVDDAPGGGALFRVRFPAGTP 331
COG4251      683 PAYFERIFVIFQRLHsrdEYLGTGLGLAICKKIAERHQGRIWVESTPGEGSTFYFTLPVGGE 744

-1

33642

COG3852

NtrB

Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]

false

true

false

363

6e-21

96.51

97.52

14,0,0,9,9,10,47,56,61,13,69,82,28,97,117,35,133,152,7,142,159,24,172,183,42,214,227,28,242,261,13,255,279,3,258,286,25,284,311,32,317,343,11

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473   1 MAGPVEAEK-TAFDLLPDGLLIADDAGRVVLLNEMGARLLQCSADAALGRDFRSVLP----LVDTAGRDCERRL------ 69
COG3852        1 MAMPTEPLAgAILNNLINPVLLVDDELAIHYANPAAEQLLAVSARRLAGTRLSELLPfgslLLSLLDQVLERGQpvteye 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473  70 --LLPDGRELLVTARFVREARGAPVSRLVV-------SFRAAAARERAERDRAELISTVAHELRSPLTSVKGfTATLLHK 140
COG3852       81 vtLVILGRSHIVDLTVAPVPEEPGSVLLEFhprdmqrRLDREQTQHAQQRAVKGLVRGLAHEIKNPLGGIRG-AAQLLER 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 141 wdRFTDEQRKLMLETVNADADRVTRLigelldVSRIDADRLELHRQVVDVGAAAARVVAGRVAAGESPQRFSVI--VDGE 218
COG3852      160 --ALPDEALRELTQLIIEEADRLRNL------VDRLEVLGPQRPGDRVPVNIHEVLERVRALVEAEFADNVRLIrdYDPS 231

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 219 LPEVWLDPDKLDQVLANLVDNAIR------HGRGTVTVHVAPA-----PGE----GVDITVTDQGDGVPPEVRPLIFRRF 283
COG3852      232 LPEVLGDRDQLIQVFLNLVRNAAQalggraDEGGEIILRTRTGiqltiAGTryrlALPLEVIDNGPGVPPDLQDHLFYPM 311

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*
gi 117928473 284 wRAGRYGGTGLGLYIVKGLVEAHGGTVSVDDAPgGGALFRVRFPA 328
COG3852      312 -VSGREGGTGLGLALAQNLIDQHGGKIEFDSWP-GRTVFRVLLPI 354

-1

137202

PRK09303

adaptive-response sensory kinase; Validated

false

true

false

378

9e-21

96.18

57.67

5,114,151,50,164,205,20,184,226,61,245,289,36,281,328,41

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 115 LISTVAHELRSPLTSVKGFTATLLHKWDRFTDEQRKLMLETVNADADRVT----RLIGELLDVSRIDADRLELH-RQVVD 189
PRK09303     152 LLAMLAHDLRTPLTAASLAVETLELGQIDPSEELSPALIEQLQDQARRQLeeieRLITDLLEVGRTRWEALQFNpQKLDL 231

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 190 VGAAAARVVAGRVAAGESPQRFSVIVDGELPEVWLDPDKLDQVLANLVDNAIRHGR--GTVTVHVAPAPGEGVDITVTDQ 267
PRK09303     232 GSLCQEVILELEKRWLAKSLEIQTDIPSDLPSVYADQRRIRQVLLNLLDNAIKYTPegGTITLTMLHRTTQKVQVSICDT 311

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 117928473 268 GDGVPPEVRPLIFR---RFWRAGRYGGTGLGLYIVKGLVEAHGGTVSVDDAPGGGALF 322
PRK09303     312 GPGIPEEEQERIFEdrvRLPRDEGTEGYGIGLSVCRRIVEVHYGQIWVDSEPGQGSCF 369

-1

138397

PRK11091

aerobic respiration control sensor protein ArcB; Provisional

false

true

false

779

2e-20

94.67

28.11

8,115,286,25,142,311,10,153,321,56,209,378,12,221,391,24,245,416,41,286,458,4,290,467,38

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 116 ISTVAHELRSPLTSVKGFTATLLHKwdRFTDEQRKLMlETVNADADRVTRLIGELLDVSRIDADRLELHRQVVDVGAAAA 195
PRK11091     287 ISTISHELRTPLNGIVGLSRMLLDT--ELTAEQEKYL-KTIHVSAITLGNIFNDIIDMDKMDRRKLQLDNQPVDFTDFLA 363

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 196 RVVAGRVAAGESPQ-RFSVIVDGELPE-VWLDPDKLDQVLANLVDNAIRHGR-GTVTVHVAPAPGEGVDITVTDQGDGVP 272
PRK11091     364 DLENLSGLQAEQKGlRFDLEPLLPLPHkVITDGTRLRQILWNLISNAVKFTQqGQVTVRVRYEDGDMLHFEVEDSGIGIP 443

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 117928473 273 PEVRPLIFRRFWRA-GRYG-----GTGLGLYIVKGLVEAHGGTVSVDDAPGGGALFRVRFPA 328
PRK11091     444 EDELDKIFAMYYQVkDSHGgkpatGTGIGLAVSRRLAQNMGGDITVTSEEGKGSTFTLTIHA 505

-1

137934

PRK10490

sensor protein KdpD; Provisional

false

true

false

895

1e-18

89.03

24.58

6,114,666,24,138,697,17,163,714,42,206,756,46,252,803,38,290,844,42

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 115 LISTVAHELRSPLTSVKGFTATLL-------HKWDRFTDEQRKLMLETvnadadrvTRLIGELLDVSRIDADRLELHRQV 187
PRK10490     667 LLAALSHDLRTPLTVLFGQAEILTldlasegSPHARQASEIRQHVLNT--------TRLVNNLLDMARIQSGGFNLKKEW 738

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 188 VDVGAAAARVVAGRVAAGeSPQRFSVIVDGELPEVWLDPDKLDQVLANLVDNAIRHGRGTVTVHV-APAPGEGVDITVTD 266
PRK10490     739 LTLEEVVGSALQMLEPGL-SQHPINLSLPEPLTLIHVDGPLFERVLINLLENAVKYAGAQAEIGIdAHVEGENLQLDVWD 817

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 117928473 267 QGDGVPPEVRPLIFRRFWRAGRYG---GTGLGLYIVKGLVEAHGGTVSVDDAPGGGALFRVRFPAGTPP 332
PRK10490     818 NGPGIPPGQEQLIFDKFARGNKESavpGVGLGLAICRAIVDVHGGTITAENRPEGGACFRVTLPQEKPP 886

-1

137612

PRK09959

hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional

false

true

false

1197

2e-18

88.25

18.46

8,114,714,23,139,737,68,208,805,16,224,824,20,244,845,15,259,864,26,285,892,4,289,897,38

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473  115 LISTVAHELRSPLTSVKGFTATLlhKWDRFTDEQRKLMLETVNADADRVTRLIGELLDVSRIDADRLELHRQVVDVGAAA 194
PRK09959      715 FLATMSHEIRTPISSIMGFLELL--SGSGLSKEQRVEAISLAYATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLV 792

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473  195 ARVVAGRVAAGESpQRFSVIVDGELPEVWL---DPDKLDQVLANLVDNAIRHG-RGTVTVHVAPAPGEG----VDITVTD 266
PRK09959      793 QNTCHSFGAIAAS-KSIALSCSSTFPEHYLvkiDPQAFKQVLSNLLSNALKFTtEGAVKITTSLGHIDDnhavIKMTIMD 871

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 117928473  267 QGDGVPPEVRPLIFRRFWR--AGRY-GGTGLGLYIVKGLVEAHGGTVSVDDAPGGGALFRVRFP 327
PRK09959      872 SGSGLSQEEQQQLFKRYSQtsAGRQqTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIP 935

-1

138409

PRK11107

hybrid sensory histidine kinase BarA; Provisional

false

true

false

920

3e-18

88.03

24.24

8,120,301,20,142,321,8,151,329,32,183,362,38,221,401,23,244,425,15,259,444,28,287,477,47

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 121 HELRSPLTSVKGFTATLLHKwdRFTDEQRKlMLETVNADADRVTRLIGELLDVSRIDADRLEL-HRQVVDVGAAAARVVA 199
PRK11107     302 HELRTPLNGVIGFTRQTLKT--PLTPTQRD-YLQTIERSANNLLAIINDILDFSKLEAGKLILeNIPFSLRETLDEVVTL 378

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 200 GRVAAGESPQRFSVIVDGELPE-VWLDPDKLDQVLANLVDNAIRHG-RGTVTVHVAPAPGEG----VDITVTDQGDGVPP 273
PRK11107     379 LAHSAHEKGLELTLNIDPDVPDnVIGDPLRLQQIITNLVGNAIKFTeSGNIDILVELRALSDekvqLEVQIRDTGIGISE 458

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 117928473 274 EVRPLIFRRFWRAG-----RYGGTGLGLYIVKGLVEAHGGTVSVDDAPGGGALFRVRFPAGTPPFA 334
PRK11107     459 RQQSQLFQAFRQADasisrRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHLPLDLNPNP 524

-1

34605

COG5000

NtrY

Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]

Signal transduction histidine kinase involved in nitrogen fixation and metabolism...

false

true

false

712

1e-17

85.78

46.63

8,14,378,48,62,436,90,152,529,30,187,559,57,244,625,14,259,639,27,287,666,30,317,697,13

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473  15 LPDGLLIADDAGRVVLLNEMGARLLQCSADAALGRDFRSVLPLVDTAG----------RDCERRLLLPDGRELLVTARFV 84
COG5000      379 LTAGVIGFDNRGCITTVNPSAEQILGKPFDQLLGQSLSAIAPELEEVFaeagaaartdKRVEVKLAREGEERTLNVQATR 458

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473  85 REARGAPVSRLVVSFRAAAARERAERDRAELISTVAHELRSPLTSVKGFTATLLHKWDRFTDEQRKLM---LETVNADAD 161
COG5000      459 EPEDNGNGYVVTFDDITDLVIAQRSAAWGDVARRIAHEIKNPLTPIQLSAERLLRKLGKEIDEDREVFdrcTDTIIRQVE 538

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 162 RVTRLIGELLDVSRIDADRLElhrqvVDVGAAAARVVAGRVAAGESPQRFSVIVDGELPEVWLDPDKLDQVLANLVDNAI 241
COG5000      539 DIKRMVDEFRAFARMPAPKLE-----KSDLRALLKEVSFLYEIGNDHIVFAAEFGGEPLIGMADATLLGQVFGNLLKNAA 613

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 242 RHG---------RGTVTVHVAPAPGEgVDITVTDQGDGVPPEVRPLIFRRFWRAgRYGGTGLGLYIVKGLVEAHGGTVSV 312
COG5000      614 EAIeaveaeerrTALIRVSLDDADGR-IVVDVIDNGKGFPRENRHRALEPYVTT-REKGTGLGLAIVKKIVEEHGGRLEL 691

                        330
                 ....*....|....*....
gi 117928473 313 DDAPG-GGALFRVRFPAGT 330
COG5000      692 HNAPDfDGAMIRIKFPLKE 710

-1

33926

COG4191

Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]

Signal transduction histidine kinase regulating C4-dicarboxylate transport system [...

false

true

false

603

2e-16

81.47

35.32

4,116,388,66,185,454,67,252,524,38,290,563,38

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 117 STVAHELRSPLTSVKGFTATLLHKWDRFTDEQRKLMLETVNADADRVTRLIGELLDVSRIDADRLElhrQVVDVGAAAAR 196
COG4191      389 AGIAHELNQPLAAIRTYADNARLLLERGRTEEARENLERISALTERMAAITAHLKSFARKSRDAAG---PVSLREAIEGA 465

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 197 VVAGRVAAGESPQRFSVIVDGELPEVWLDPDKLDQVLANLVDNAIRHGRGTVTVHV---APAPGEGVDITVTDQGDGVPP 273
COG4191      466 LELLRGRLRAAGVELELDLPDAPLWVMANEIRLEQVLVNLLQNALDAMAGQEDRRLsirAQREGGQVVLTVRDNGPGIAP 545

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 117928473 274 EVRPLIFRRFWRAGRYG-GTGLGLYIVKGLVEAHGGTVSVDDAPGGGALFRVRFPA 328
COG4191      546 EALPHLFEPFFTTKPVGkGLGLGLAISQNIARDLGGSLEVANHPEGGASFTIELRR 601

-1

137977

PRK10549

signal transduction histidine-protein kinase BaeS; Provisional

false

true

false

467

3e-15

77.84

45.18

8,118,247,14,139,261,18,157,282,52,212,334,9,221,346,31,252,378,34,286,414,2,288,419,39

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 119 VAHELRSPLTSVKGftatllhKWDRFTDEQRKLMLETVN---ADADRVTRLIGELLDVSRIDADRLELHRQVVDVGAAAA 195
PRK10549     248 ISHELRTPLAVLRG-------ELEAIQDGVRKFTPESVAslqAEVGTLTKLVDDLHQLSLSDEGALAYQKTPVDLVPLLE 320

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 196 RVVAGRVAAGESPQrfsVIVDGELPE---VWLDPDKLDQVLANLVDNAIRHGRGTVTVHV-APAPGEGVDITVTDQGDGV 271
PRK10549     321 VAGGAFRERFASRG---LTLQFSLPDsatVFGDPDRLMQLFNNLLENSLRYTDSGGSLHIsAEQHDKTLRLTFADSAPGV 397

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 117928473 272 PPEVRPLIFRRFWRA--GR---YGGTGLGLYIVKGLVEAHGGTVSVDDAPGGGALFRVRFP 327
PRK10549     398 SDEQLQKLFERFYRTegSRnraSGGSGLGLAICLNIVEAHNGRIIAAHSPFGGVSITVELP 458

-1

138336

PRK11006

phoR

phosphate regulon sensor protein; Provisional

false

true

false

431

5e-15

77.06

61.95

9,46,156,48,112,204,22,142,226,6,148,238,71,220,309,24,244,334,3,247,338,9,257,347,31,288,383,40

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473  47 LGRDFRSVLPLVDTAGRDCERRLLLPDGRELLVTARFVREARGAPVSRlvvsfraaaareraerdrAELISTVAHELRSP 126
PRK11006     157 KTRDFSRPLNLVLNNGRHLEIRVMPYTEGQLLMVARDVTQMHQLEGAR------------------RNFFANVSHELRTP 218

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 127 LTSVKGFTatllhkwdRFTDEQ------RKLMLETVNADADRVTRLIGELLDVSRIDADRLELHRQVVDVGAAAARVVAG 200
PRK11006     219 LTVLQGYL--------EMMEEQplegpmREKALHTMREQTQRMEGLVKQLLTLSKIEAAPTHLLNEKVDVPMMLRVLERE 290

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 201 RVAAGESPQRFSVIVDGELpEVWLDPDKLDQVLANLVDNAIRHG-RGT-VTVHVAPAPgEGVDITVTDQGDGVPPEVRPL 278
PRK11006     291 AQTLSQKKHTITFEVDDSL-KVLGNEDQLRSAISNLVYNAVNHTpEGThITVRWQRVP-HGAEFSVEDNGPGIAPEHIPR 368

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 117928473 279 IFRRFWRAGR-----YGGTGLGLYIVKGLVEAHGGTVSVDDAPGGGALFRVRFPA 328
PRK11006     369 LTERFYRVDKarsrqTGGSGLGLAIVKHALNHHDSRLEIESTVGKGTRFSFVLPE 423

-1

33099

COG3290

CitA

Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]

Signal transduction histidine kinase regulating citrate/malate metabolism [Signal...

false

true

false

537

9e-15

76.03

58.66

12,7,215,4,11,220,28,39,250,18,57,274,28,85,305,5,95,310,6,116,316,31,152,347,6,158,355,65,223,422,18,241,445,17,259,462,68

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473   8 EKTA-FDLLPDGLLIADDAGRVVLLNEMGARLL--QCSADAALGRDFRSVLPL------VDTAGRDCERRLLLPDGRELL 78
COG3290      216 ERQAmLQSIKEGVIAVDKKGVITLINQAAQKLLglRQPSGDPIGRSIVEVLPPdsdlpeVLETGKPQHDEEIRINGRLLV 295

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473  79 VTARFVR---EARGApvsrlVVSFRAaaareraerdraeliSTVAHELRSPLTSVKGFTATLLHKWDRFTDEqrklmLET 155
COG3290      296 ANRVPIRsggQIVGA-----IITFRD---------------KTEIKKLTEQLTGVRQYAEALRAQSHEFMNK-----LHT 350

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 156 VNA--DADRVTRLIGELLDVSRIDADRLELHRQVVDVGAAAARVVAGRVAAGESPQRFSVIVDGELPEVW--LDPDKLDQ 231
COG3290      351 ILGllQLGEYDDALDYIQQESEEQQELIDSLSEKIKDPVLAGFLLGKISRARELGVSLIIDPNSQLPQLPseLQPHDLVT 430

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 232 VLANLVDNAI-----RHGRGTVTVHVAPAPGEgVDITVTDQGDGVPPEVRPLIFRRFWRAGRYGGTGLGLYIVKGLVEAH 306
COG3290      431 ILGNLIDNALeallaPEENKEIELSLSDRGDE-LVIEVADTGPGIPPEVRDKIFEKGVSTKNTGGRGIGLYLVKQLVERL 509

                        330       340
                 ....*....|....*....|.
gi 117928473 307 GGTVSVDDAPGGGALFRVRFP 327
COG3290      510 GGSIEVESEKGQGTRFSIYIP 530

-1

138388

PRK11073

glnL

nitrogen regulation protein NR(II); Provisional

false

true

false

348

1e-14

75.91

58.91

11,114,132,18,133,150,8,141,160,13,158,173,24,182,198,3,194,201,20,214,223,28,242,256,6,248,265,10,258,279,25,284,304,33

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 115 LISTVAHELRSPLTSVKGfTATLLHKW--DRFTDEQRKLMLEtvnaDADRVTRLIGELLDVSRIDADRLE-LHRqvvdvg 191
PRK11073     133 LVRGLAHEIKNPLGGLRG-AAQLLSKAlpDPALTEYTKVIIE----QADRLRNLVDRLLGPQRPGTHITEsIHK------ 201

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 192 aaaARVVAGRVAAGESPQRFSVI--VDGELPEVWLDPDKLDQVLANLVDNAIR-----HGRGTV---TVHVAPAPGE--- 258
PRK11073     202 ---VAERVVQLVSLELPDNVRLIrdYDPSLPELAHDPDQIEQVLLNIVRNALQalgpeGGEITLrtrTAFQLTLHGEryr 278

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 259 -GVDITVTDQGDGVPPEVRPLIFRRFwRAGRYGGTGLGLYIVKGLVEAHGGTVSVDDAPG 317
PRK11073     279 lAARIDIEDNGPGIPPHLQDTLFYPM-VSGREGGTGLGLSIARNLIDQHSGKIEFTSWPG 337

-1

138589

PRK11466

hybrid sensory histidine kinase TorS; Provisional

false

true

false

912

3e-14

74.68

24.01

8,114,446,18,133,464,6,141,470,42,183,515,41,224,557,19,243,577,8,252,585,34,286,620,45

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 115 LISTVAHELRSPLTSVKGfTATLLHkwDRFTDEQRKLMLETVNADADRVTRLIGELLDVSRIDADRLEL---HRQVVDVG 191
PRK11466     447 FLAAMSHEIRTPLYGILG-TAQLLA--DNPALNAQRDDLRAITDSGESLLTILNDILDYSAIEAGGKNVsvsDEPFEPRP 523

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 192 AAAARVVAGRVAAGESPQRFSVIVDGELPEVWL-DPDKLDQVLANLVDNAIRH-GRGTVTVHvAPAPGEGVDITVTDQGD 269
PRK11466     524 LLESTLQLMSGRVKGRPIRLATDIADDVPSALMgDPRRIRQVITNLLSNALRFtDEGSIVLR-SRTDGEQWLVEVEDSGC 602

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 117928473 270 GVPPEVRPLIFRRFWRA-GRYGGTGLGLYIVKGLVEAHGGTVSVDDAPGGGALFRVRFPAGTP 331
PRK11466     603 GIDPAKLAEIFQPFVQVsGKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRHA 665

-1

137309

PRK09467

envZ

osmolarity sensor protein; Provisional

false

true

false

437

3e-14

74.57

46.00

9,114,233,17,133,250,3,141,253,11,153,264,24,185,288,25,212,313,9,221,326,30,252,356,33,285,392,42

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 115 LISTVAHELRSPLTSVKgfTATllhkwDRFTDEQRKLMlETVNADADRVTRLIGELLDVSRIDadrlelhrQVVDVGAAA 194
PRK09467     234 LMAGVSHDLRTPLTRIR--LAT-----EMMSEEDGYLA-ESINKDIEECNAIIEQFIDYLRTD--------QEMPMEMAD 297

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 195 ARVVAGRVAAGESPQRfsVIVDGELPE----VWLDPDKLDQVLANLVDNAIRHGRGTVTVHvAPAPGEGVDITVTDQGDG 270
PRK09467     298 LNALLGEVIAAESGYE--REIETALYPgpieVPMNPIAIKRALANLVVNAARYGNGWIKVS-SGTEGNRAWFQVEDNGPG 374

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 271 VPPEVRPLIFRRFWR---AGRYGGTGLGLYIVKGLVEAHGGTVSVDDAPGGGALFRVRFP 327
PRK09467     375 IPEEQIKHLFQPFTRgdsARGSSGTGLGLAIVKRIVDQHQGKVELGNREEGGLSARAWLP 434

-1

138212

PRK10841

hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional

false

true

false

947

4e-14

73.92

22.81

10,115,473,18,133,496,10,151,506,33,184,540,40,224,581,21,245,603,10,256,613,17,273,631,5,279,636,8,287,649,40

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 116 ISTVAHELRSPLTSVKGF-----TATLLHKWDRftdeqrklMLETVNADADRVTRLIGELLDVSRIDADRLELH-RQVVD 189
PRK10841     474 LATVSHELRTPLYGIIGNldllqTKELPKGVDR--------LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEpREFSP 545

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 190 VGAAAARVVAGRVAAGESPQRFSVIVDGELPEVWL-DPDKLDQVLANLVDNAIRHGR-GTVTVHVAPApGEGVDITVTDQ 267
PRK10841     546 REVMNHITANYLPLVVKKQLGLYCFIEPDVPVSLNgDPMRLQQVISNLLSNAIKFTDtGCIILHVRVD-GDYLSFRVRDT 624

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 117928473 268 GDGVPP-EVRPLiFRRFWRAG-----RYGGTGLGLYIVKGLVEAHGGTVSVDDAPGGGALFRVRFP 327
PRK10841     625 GVGIPAkEVVRL-FDPFFQVGtgvqrNFQGTGLGLAICEKLINMMDGDISVDSEPGMGSQFTVRIP 689

-1

137828

PRK10337

sensor protein QseC; Provisional

false

true

false

446

2e-13

71.35

46.19

8,116,238,18,134,258,6,145,264,3,148,268,30,181,298,43,224,345,34,261,379,24,285,405,39

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 117 STVAHELRSPLTSVKGFT--ATLLHKwdrftDEQ-RKLMLETVNADADRVTRLIGELLDVSRIDAdrlELHRQVVDVGAA 193
PRK10337     239 SDAAHELRSPLTALKVQTevAQLSDD-----DPQaRKKALLQLHSGIDRATRLVDQLLTLSRLDS---LDNLQDVAEIPL 310

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 194 AARVVAGRVAAGESPQRFSVIVDGELPEVWL----DPDKLDQVLANLVDNAIRHGRGTVTVHVAPAPGEgvdITVTDQGD 269
PRK10337     311 EDLLQSAVMDIYHTAQQAKIDVRLTLNAHGIkrtgQPLLLSLLVRNLLDNAVRYSPQGSVVDVTLNARN---FTVRDNGP 387

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 117928473 270 GVPPEVRPLIFRRFWR--AGRYGGTGLGLYIVKGLVEAHGGTVSVDDAPGGGALFRV 324
PRK10337     388 GVTPEALARIGERFYRppGQTATGSGLGLSIVQRIAKLHGMNVSFGNAEEGGFEAKV 444

-1

139897

PRK13837

two-component VirA-like sensor kinase; Provisional

false

true

false

831

4e-13

70.49

14.80

4,224,559,18,242,579,8,250,601,36,287,637,45

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 225 DPDKLDQVLANLVDNAIR--HGRGTVTV--------------HVAPAPGEGVDITVTDQGDGVPPEVRPLIFRRFWRAgR 288
PRK13837     560 NPAQLQQVILNLCKNAAQamDENGRVDIrlsrvdlrkpkvlaHGTAPPGRYVLLRVSDTGRGIDEAVLPHIFEPFFTT-R 638

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 117928473 289 YGGTGLGLYIVKGLVEAHGGTVSVDDAPGGGALFRVRFPAGTPP 332
PRK13837     639 ARGTGLGLATVHGIVSAHAGYIDVQSTVGRGTRFDVYLPPSSKV 682

-1

131962

TIGR02916

PEP_his_kin

putative PEP-CTERM system histidine kinase

false

true

false

679

9e-12

66.28

17.38

6,209,561,10,220,571,22,242,595,11,254,606,20,274,627,9,284,636,43

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 210 RFSVIVDGELpEVWLDPDKLDQVLANLVDNAIR--HGRGTVTVHVApAPGEGVDITVTDQGDGVPPE-VRPLIFRRFwRA 286
TIGR02916    562 RPEVSIDTDL-SVRADRERLERVLGHLVQNALEatPGEGRVAIRVE-RECGAARIEIEDSGCGMSPAfIRERLFKPF-DT 638

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 117928473 287 GRYGGTGLGLYIVKGLVEAHGGTVSVDDAPGGGALFRVRFP 327
TIGR02916    639 TKGAGMGIGVYECRQYVEEIGGRIEVESTPGQGTIFTLVLP 679

-1

137545

PRK09835

sensor kinase CusS; Provisional

false

true

false

482

1e-11

65.63

46.27

10,93,242,25,118,268,22,141,290,16,158,306,49,208,355,35,243,393,3,247,396,8,256,404,31,287,439,3,290,443,22

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473  94 RLVVSFRAAAARERAERDRAELIST-VAHELRSPLTSVKGFTATLLHKwDRFTDEQRKLMLETVNaDADRVTRLIGELLD 172
PRK09835     243 QLVLSFNHMIERIEDVFTRQSNFSAdIAHEIRTPITNLITQTEIALSQ-SRSQKELEDVLYSNLE-ELTRMAKMVSDMLF 320

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 173 VSRIDADRLELHRQVVDVGAAAARVVAGRVAAGESpQRFSVIVDGELPEVWLDPDKLDQVLANLVDNAIRH---GRGtVT 249
PRK09835     321 LAQADNNQLIPEKKMLNLADEVGKVFDFFEALAED-RGVELRFVGDPCQVAGDPLMLRRALSNLLSNALRYtpeGEA-IV 398

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 117928473 250 VHVAPApGEGVDITVTDQGDGVPPEVRPLIFRRFWRAG----RYG-GTGLGLYIVKGLVEAHGGTVSV 312
PRK09835     399 VRCQTV-DHQVQVVVENPGTPIAPEHLPRLFDRFYRVDpsrqRKGeGSGIGLAIVKSIVVAHKGTVAV 465

-1

139663

PRK13557

histidine kinase; Provisional

false

true

false

538

2e-10

61.66

25.65

6,211,254,8,219,263,4,223,270,17,240,289,12,252,315,38,290,354,38

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 212 SVIVDGEL-PEVW---LDPDKLDQVLANLVDNA--IRHGRGTVTVHV--------------APAPGEGVDITVTDQGDGV 271
PRK13557     255 AVTIETDLaPDLWncrIDPTQAEVALLNVLINArdAMPEGGRVTVRTenveitehdlamyhQLPPGRYVSIAVTDTGSGM 334

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 117928473 272 PPEVRPLIFRRFWRAGRYG-GTGLGLYIVKGLVEAHGGTVSVDDAPGGGALFRVRFPA 328
PRK13557     335 PPEILARVMEPFFTTKEEGkGTGLGLSMVYGFAKQSGGAVRIYSEVGEGTTVRLYFPA 392

-1

138144

PRK10755

sensor protein BasS/PmrB; Provisional

false

true

false

355

3e-09

57.77

58.03

7,118,149,13,137,162,2,148,164,12,160,183,45,205,230,81,286,312,30,316,343,12

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 119 VAHELRSPLTSVKgftatlLHkwdrftdeqRKLMLETVNADA-------DRVTRLIGELLDVSRIDADRLELHRQVVDVG 191
PRK10755     150 VAHELRTPLAGVR------LH---------LELLAKTHHIDVapliarlDQMMHSVSQLLQLARAGQSFSSGNYQTVKLL 214

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 192 AAAARVVAGRVAAG--ESPQRFSVIVDGELPEVWLDPDKLDQVLANLVDNAIRHGRGTVTVHVAPAPGEGVDITVTDQGD 269
PRK10755     215 EDVILPSYDELSTMleQRQQTLLLPESAADITVQGDATLLRLLLRNLVENAHRYSPEGSNITIKLQEDGGAVMAVEDEGP 294

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 117928473 270 GVPPEVRPLIFRRFWRA-GRYGGTGLGLYIVKGLVEAHGGTVSVDDAP-GGGALFRVRFPA 328
PRK10755     295 GIDESKCGELSKAFVRMdSRYGGIGLGLSIVSRITQLHHGQFFLQNRQeRSGTRAWVWLKK 355

-1

138194

PRK10815

sensor protein PhoQ; Provisional

false

true

false

484

9e-09

56.26

22.52

4,219,366,11,230,379,26,257,405,32,289,438,37

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 220 PEVWLDPDKLD--QVLANLVDNAIRHGRGTVTVHVAPAPgEGVDITVTDQGDGVPPEVRPLIFRRFWRAGRY-GGTGLGL 296
PRK10815     367 PEISFVGEQNDfmEVMGNVLDNACKYCLEFVEISARQTD-EHLHIVVEDDGPGIPESKRELIFDRGQRVDTLrPGQGVGL 445

                         90       100       110
                 ....*....|....*....|....*....|
gi 117928473 297 YIVKGLVEAHGGTVSVDDAPGGGALFRVRF 326
PRK10815     446 AVAREITEQYEGKIVASESPLGGARMEVIF 475

-1

138393

PRK11086

sensory histidine kinase DcuS; Provisional

false

true

false

541

5e-08

53.80

22.18

8,211,413,11,223,424,4,227,431,14,241,451,11,256,462,3,259,466,23,282,490,6,290,496,37

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 212 SVIVDGELPEVwLDPD---KLDQVLANLVDNAI------RHGRGTVTVHVapapGEG-VDITVTDQGDGVPPEVRPLIFR 281
PRK11086     414 IISEDSQLPDS-DDEDqvhELITILGNLIENALeavsneEGGEISVSLHY----RHGwLHIEVSDDGPGIAPEEIEAIFD 488

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 117928473 282 R-FWRAGRygGTGLGLYIVKGLVEAHGGTVSVDDAPGGGALFRVRFP 327
PRK11086     489 KgYSTKGS--NRGVGLYLVKQSVENLGGSIAVESEPGIGTQFFVQIP 533

-1

131984

TIGR02938

nifL_nitrog

nitrogen fixation negative regulator NifL

false

true

false

494

7e-08

53.37

23.48

4,218,377,23,241,410,10,256,420,28,284,450,43

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 219 LPEVWLDPDKLDQVLANLVDNAI----------RHGRGTVTVHvapapGEGVDITVTDQGDGVPPEVRPLIFRRFW--RA 286
TIGR02938    378 LPAILGRELQLRSLFKALVDNAIeamnikgwkrRELSITTALN-----GDLIVVSILDSGPGIPQDLRYKVFEPFFttKG 452

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 117928473 287 GRYGGTGLGLYIVKGLVEAHGGTVSVDDAPGGGALFRVRFP 327
TIGR02938    453 GSRKHIGMGLSVAQEIVADHGGIIDLDDDYSEGCRIIVEFR 493

-1

33927

COG4192

Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]

Signal transduction histidine kinase regulating phosphoglycerate transport system [...

false

true

false

673

9e-08

52.77

31.20

4,115,454,69,187,523,52,239,578,44,284,622,42

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 116 ISTVAHELRSPLTSVKGFTATLLHKWDRFTDEQRKLMLETVNADADRVTRLIGELLDVSRIDADRLELHrqvVDVGAAAA 195
COG4192      455 MTSLAHEINQPLNAMSAYLFSARLALEEAPSAQAATSLDKIENLTERMGKIVNSLRQFARKNSSDESLQ---PVRLNSVV 531

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 196 RVVAGRVAAGESPQRFSVIVDGELPEVWLDPDKLDQVLANLVDN---AIRHGRGTVTVHVAPAPGEGVDITVTDQGDGVP 272
COG4192      532 EQAWELLQTKHKRRQIKLINPTDDLMVMGDAVSIEQVLVNLIVNaldASTHFAPWIKLIALGTEQEMLRIAIIDNGQGWP 611

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 117928473 273 PEVRPLIFRRFwRAGRYGGTGLGLYIVKGLVEAHGGTVSVDDAPGGGALFRVRF 326
COG4192      612 HELVDKLLTPF-TTSKEVGLGLGLSISQSLMEQMQGRLALASTLTKNAMVILEF 664

-1

33640

COG3850

NarQ

Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]

Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction...

false

true

false

574

3e-06

47.97

18.64

6,210,460,26,236,489,11,247,501,11,259,512,18,285,530,5,295,535,32

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 211 FSVIVDGELPEVWLDPDKLDQVLANL---VDNAIRHGRGT-VTVHVAPAPGEgVDITVTDQGDGVPPEVRPlifrrfwrA 286
COG3850      461 ITVTLDYQLPPRALPAHQQVHLLQIVreaLSNAIKHAQASeIKVTVSQNDGQ-VTLTVEDNGVGIDEAAEP--------S 531

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 117928473 287 GRYGgtglgLYIVKGLVEAHGGTVSVDDAPGGGALFRVRFP 327
COG3850      532 GHYG-----LNIMRERAQRLGGQLRIRRREGGGTEVSLTFP 567

-1

34223

COG4585

Signal transduction histidine kinase [Signal transduction mechanisms]

false

true

false

365

6e-06

46.73

30.68

5,205,253,31,236,287,11,247,299,6,254,305,21,289,326,39

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 206 ESPQRFSVIVDGELPEVWLDPDKLDQVLANL---VDNAIRHGRGT-VTVHVApAPGEGVDITVTDQGDGVPPEVrplifr 281
COG4585      254 EERTGITVDLSLGSELERLPPEAEDALFRIVqeaLTNAIRHAQATeVRVTLE-RTDDELRLEVIDNGVGFDPDK------ 326

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 117928473 282 rfwragryGGTGLGLYIVKGLVEAHGGTVSVDDAPGGGALFRVRFPA 328
COG4585      327 --------EGGGFGLLGMRERVEALGGTLTIDSAPGQGTTVTITLPL 365

-1

33706

COG3920

Signal transduction histidine kinase [Signal transduction mechanisms]

false

true

false

221

1e-04

42.20

50.23

7,211,103,7,219,110,9,228,122,16,244,143,18,262,162,15,289,177,27,317,204,10

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 212 SVIVDGElPEVWLDPDK---LDQVLANLVDNAIRHG-----RGTVTVHVAPAPGEGVDI-TVTDQGDGVPPEVRPlifrr 282
COG3920      104 RLILDSG-PNVFLDPDTavpLGLIVHELVTNALKHAflsrpGGEIRITLSREGDGGRFLlTVWDEGGGPPVEAPL----- 177

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 117928473 283 fwragryGGTGLGLYIVKGLVEAHGGTVSVDDAPgGGALFRVRFP 327
COG3920      178 -------SRGGFGLQLVERLVPEQLGGELEDERP-DGTEFRLRFP 214

-1

117025

pfam08448

PAS_4

PAS fold

false

true

false

110

6e-04

40.09

78.18

1,11,0,86

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473  12 FDLLPDGLLIADDAGRVVLLNEMGARLLQCSADAALGRDFRSVLPLVDTAGRDCERRLLLPDGRELLVTARFVREARGAP 91
pfam08448      1 LDSLPDALAVLDPDGRVRYANAAAAELFGLPPEELLGKTLAELLPPEDAARLERALRRALEGEEPIDFLEELLLNGEERH 80


                 ....*.
gi 117928473  92 VSRLVV 97
pfam08448     81 YELRLT 86

-1

138290

PRK10935

nitrate/nitrite sensor protein NarQ; Provisional

false

true

false

568

0.001

39.48

18.31

6,214,457,19,233,481,3,238,484,9,247,494,31,286,525,4,295,529,32

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 215 VDGELPEVWLDPDKLDQVL-----ANLvdNAIRHGRGT-VTVHVAPAPGEGVDITVTDQGDGVPPEVRPLifrrfwraGR 288
PRK10935     458 LDCRLPSQALDAQQQVHLLqiireATL--NAIKHANASeIAVSCVTNPDGEVTVSIRDDGVGIGELKEPE--------GH 527

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 117928473 289 YGgtglgLYIVKGLVEAHGGTVSVDDAPGGGALFRVRFP 327
PRK10935     528 YG-----LNIMHERASRLGGTLTFSQNPGGGTTVSLTFP 561

-1

33086

COG3275

LytS

Putative regulator of cell autolysis [Signal transduction mechanisms]

false

true

false

557

0.001

39.08

16.34

6,207,437,7,214,446,12,230,458,14,244,478,9,254,487,23,290,510,18

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 208 PQRFSVI--VDGELPEVWLDPdkldQVLANLVDNAIRHG------RGTVTVHVApAPGEGVDITVTDQGDGVPPEVRPli 279
COG3275      438 GDRLDVVidIDEELRQVQIPS----FILQPLVENAIKHGisqlkdTGRVTISVE-KEDADLRIEVEDNGGLIQPDEED-- 510

                         90       100
                 ....*....|....*....|....*....
gi 117928473 280 frrfwragrygGTGLGLYIVKGLVEAHGG 308
COG3275      511 -----------GTGIGLANVHKRLKLLYG 528

-1

30988

COG0643

CheA

Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]

Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion /...

false

true

false

716

0.002

38.77

5.17

1,290,535,37

                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 117928473 291 GTGLGLYIVKGLVEAHGGTVSVDDAPGGGALFRVRFP 327
COG0643      536 GRGVGMDVVKTNIEQLGGSISVSSEPGKGTTFTIRLP 572

-1

106506

PRK13560

hypothetical protein; Provisional

false

true

false

807

0.003

37.73

10.90

5,231,714,13,244,732,30,277,762,5,290,767,25,317,792,10

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928473 232 VLANLVDNAIRHG-----RGTVTVHVAPAPGEGVDITVTDQGDGVPPEvrpLIFRRfwragrygGTGLGLYIVKGLVEAH 306
PRK13560     715 IISELLSNALKHAfpdgaAGNIKVEIREQGDGMVNLCVADDGIGLPAG---FDFRA--------AETLGLQLVCALVKQL 783

                         90       100
                 ....*....|....*....|.
gi 117928473 307 GGTVSVDDApgGGALFRVRFP 327
PRK13560     784 DGEIALDSR--GGARFNIRFP 802

-1

110021

pfam00989

PAS

PAS fold

false

true

false

112

0.007

36.61

68.75

1,8,3,77

                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 117928473   9 KTAFDLLPDGLLIADDAGRVVLLNEMGARLLQCSADAALGRDFRSVLPLVDTAGRDCERRLLLPDGRELLVTARFVR 85
pfam00989      4 RAILESLPDGIFVVDEDGRILYVNAAAEELLGLSREEVIGKSLLDLIPEDDDAVAELLRQALLQGEESRGFEVSFRV 80

-1

ATP binding site	0	17	17	true	28956	cd00075	HATPase_c
Mg2+ binding site	1	1	1	true	28956	cd00075	HATPase_c
G-X-G motif	2	4	4	true	28956	cd00075	HATPase_c
phosphorylation site	0	1	1	true	119399	cd00082	HisKA
dimer interface	1	12	12	true	119399	cd00082	HisKA