NCBI Conserved Domain Search

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Conserved domains on [gi\|117928403\|ref\|YP_872954.1\|]
two component transcriptional regulator [Acidothermus cellulolyticus 11B]

Graphical summary show options »	Show site features Horizontal zoom: ×	?



List of domain hits		?

References:

Marchler-Bauer A et al. (2009), "CDD: specific functional annotation with the Conserved Domain Database.", Nucleic Acids Res.37(D)205-10.

Marchler-Bauer A, Bryant SH (2004), "CD-Search: protein domain annotations on the fly.", Nucleic Acids Res.32(W)327-331.

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of the residues that compose this conserved feature have been mapped to the query sequence.

Click on the triangle to view details about the feature, including a multiple sequence alignment of your query sequence and the protein sequences used to curate the domain model, where hash marks (#) above the aligned sequences show the location of the conserved feature residues.

The thumbnail image, if present, provides an approximate view of the feature's location in 3 dimensions. Click on the triangle for interactive 3D structure viewing options.

This image shows a graphical summary of conserved domains identified on the query sequence. The Show Concise/Full Display button at the top of the page can be used to select the desired level of detail: only top scoring hits (labeled illustration) or all hits (labeled illustration).
Domains are color coded according to superfamilies to which they have been assigned. Hits with scores that pass a domain-specific threshold (specific hits) are drawn in bright colors. Others (non-specific hits) and superfamily placeholders are drawn in pastel colors.
if a domain or superfamily has been annotated with functional sites (conserved features), they are mapped to the query sequence and indicated through sets of triangles with the same color and shade of the domain or superfamily that provides the annotation.
Mouse over the colored bars or triangles to see descriptions of the domains and features. click on the bars or triangles to view your query sequence embedded in a multiple sequence alignment of the proteins used to develop the corresponding domain model.

The table lists conserved domains identified on the query sequence. Click on the plus sign (+) on the left to display full descriptions, alignments, and scores. Click on the PssmId to view the multiple sequence alignment of the proteins used to develop the corresponding domain model.

To view your query sequence embedded in that multiple sequence alignment, click on the colored bars in the Graphical Summary portion of the search results page, or click on the triangles, if present, that represent functional sites (conserved features) mapped to the query sequence.

Concise Display shows only the best scoring domain model, in each hit category listed below except non-specific hits, for each region on the query sequence. (labeled illustration)
Full Display shows all domain models, in each hit category below, that meet or exceed the RPS-BLAST threshold for statistical significance. (labeled illustration)
Four types of hits can be shown, as available, for each region on the query sequence:

specific hits meet or exceed a domain-specific e-value threshold (illustrated example) and represent a very high confidence that the query sequence belongs to the same protein family as the sequences use to create the domain model
non-specific hits meet or exceed the RPS-BLAST threshold for statistical significance (default E-value cutoff of 0.01, or an E-value selected by user via the advanced search options)
the domain superfamily to which the specific and non-specific hits belong
multi-domain models that were computationally detected and are likely to contain multiple single domains

The CD-Search help document provides more detail about the tool and its features.

Retrieve proteins that contain one or more of the domains present in the query sequence, using the Conserved Domain Architecture Retrieval Tool (CDART).

Modify your query to search against a different database and/or use advanced search options

29071

cd00156

REC

Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers

Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC,...

true

false

true

113

6e-25

109.18

92.04

2,4,0,65,69,66,38

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403   5 LVVDDEPAIVRALRINLTARGYEVYTAFDGRTALQLVTAHKPDLMILDLGLPDMDGIDVIGGVRG-WSTMPILVLSARDQ 83
cd00156        1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAEEKPDLILLDIMMPGMDGLELLRRIRKrGPDIPIIFLTAHGD 80

                         90       100
                 ....*....|....*....|....
gi 117928403  84 EAQKVKALDAGADDYVTKPFGMDE 107
cd00156       81 DEDAVEALKAGADDYLTKPFSPEE 104

cl09944

142340

REC

Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC,...

29475

cd00383

trans_reg_C

Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and a response regulator. The former autophosphorylates in a histidine residue on detecting an external stimulus. The phosphate is then transferred to an invariant aspartate residue in a highly conserved receiver domain of the response regulator. Phosphorylation activates a variable effector domain of the response regulator, which triggers the cellular response. The C-terminal effector domain contains DNA and RNA polymerase binding sites. Several dimers or monomers bind head to tail to small tandem repeats upstream of the genes. The RNA polymerase binding sites interact with the alpha or sigma subunite of RNA polymerase.

Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa...

true

false

true

1e-23

104.84

95.79

1,131,4,91

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403 132 DFTIDLADKTVRRGDEPIRLTPTEWHILDILARHAGRLVTTRQLLHDVWGPTYRNETHYLRVYMAQLRRKLEPDPAHPRY 211
cd00383        5 DLVLDPARREVTRDGEPVELTPKEFELLELLARNPGRVLSREQLLEAVWGDDYDVDDRTVDVHISRLRKKLEDDPSNPRL 84

                         90
                 ....*....|.
gi 117928403 212 LRTEPGIGYRL 222
cd00383       85 IKTVRGVGYRL 95

cl00209

140514

trans_reg_C

Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa...

109140

pfam00072

Response_reg

Response regulator receiver domain

false

111

1e-24

108.05

94.59

2,3,0,66,69,67,38

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403   4 VLVVDDEPAIVRALRINLTARGYEVYTAFDGRTALQLVTAHKPDLMILDLGLPDMDGIDVIGGVRG-WSTMPILVLSARD 82
pfam00072      1 VLIVDDDPLIRELLRQLLEKEGYVVAEADDGEEALELLKEKRPDLILLDIRMPGMDGLELLRRIRRrPPTTPVIVLTAHG 80

                         90       100
                 ....*....|....*....|....*
gi 117928403  83 QEAQKVKALDAGADDYVTKPFGMDE 107
pfam00072     81 DEEDAVEALKAGANDFLSKPFDPEE 105

cl09944

142340

REC

Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC,...

-1

129095

smart00862

Trans_reg_C

Transcriptional regulatory protein, C terminal

false

1e-20

95.33

100.00

2,145,0,41,186,42,36

                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 117928403 146 DEPIRLTPTEWHILDILARHAGRLVTTRQLLHDVWGPTYRN-ETHYLRVYMAQLRRKLEPDPAHPRYLRTEPGIGYRL 222
smart00862     1 GEPIKLTPKEFRLLELLLRNPGRVVSREELLEAVWGDDDDDvDDNTLDVHISRLRKKLEDDGANPRLIETVRGVGYRL 78

cl00209

140514

trans_reg_C

Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa...

-1

109539

pfam00486

Trans_reg_C

Transcriptional regulatory protein, C terminal

false

1e-20

94.91

100.00

1,145,0,77

                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 117928403 146 DEPIRLTPTEWHILDILARHAGRLVTTRQLLHDVWGPTYRNETHYLRVYMAQLRRKLEPDPAHPRYLRTEPGIGYRL 222
pfam00486      1 GEPVELTPKEFELLELLLENPGRVVSREELLEEVWGEDFEVDDRTVDVHISRLRKKLEDDPGDPRLIKTVRGVGYRL 77

cl00209

140514

trans_reg_C

Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa...

-1

31127

COG0784

CheY

FOG: CheY-like receiver [Signal transduction mechanisms]

false

130

9e-17

82.20

81.54

4,0,4,36,36,41,9,45,51,24,69,76,34

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403   1 MASVLVVDDEPAIVRALRINLTARGYEVYTAFDGRT-ALQLVTAHK-PDLMILDLGLPDMDGIDVIGGVRG-WSTMPILV 77
COG0784        5 GLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEeALELLRELPqPDLILLDINMPGMDGIELLRRLRArGPNIPVIL 84

                         90       100
                 ....*....|....*....|....*.
gi 117928403  78 LSARDQEAQKVKALDAGADDYVTKPF 103
COG0784       85 LTAYADEADRERALAAGADDYLTKPI 110

cl09944

142340

REC

Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC,...

-1

33505

COG3710

CadC

DNA-binding winged-HTH domains [Transcription]

false

148

5e-12

66.52

83.78

3,125,6,62,188,68,36,224,114,16

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403 126 PRIITPDFTIDLADKTVRRGDEPIRLTPTEWHILDILARHAGRLVTTRQLLHDVWGPTYRNEtHYLRVYMAQLRRKLEPD 205
COG3710        7 DYFIFGPFVLDPKLRSLLRGDEVVKLGPRELKLLSLLLERAGEVVSKDELLDAVWPGRIVTV-NTLTQAISALRRALRDI 85

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 117928403 206 PAHPRYLRTEPGIGYRLVV----------EPTPAVDPSTPPSSVP 240
COG3710       86 GDGHRLIATVPRRGYKFTAdviiiieeekEELDASSPEVEPEIAA 130

cl00209

140514

trans_reg_C

Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa...

-1

128724

smart00448

REC

cheY-homologous receiver domain

false

2e-11

64.14

98.18

1,2,1,54

                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 117928403   3 SVLVVDDEPAIVRALRINLTARGYEVYTAFDGRTALQLVTAHKPDLMILDLGLP 56
smart00448     2 RILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKEEKPDLILLDIMMP 55

cl09944

142340

REC

Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC,...

-1

138024

PRK10610

chemotaxis regulatory protein CheY; Provisional

false

129

1e-10

61.57

79.84

3,4,8,23,27,32,41,68,76,35

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403   5 LVVDDEPAIVRALRINLTARGYE-VYTAFDGRTALQLVTAHKPDLMILDLGLPDMDGIDVIGGVR---GWSTMPILVLSA 80
PRK10610       9 LVVDDFSTMRRIVRNLLKELGFNnVEEAEDGVDALNKLQAGGFGFVISDWNMPNMDGLELLKTIRadgAMSALPVLMVTA 88

                         90       100
                 ....*....|....*....|...
gi 117928403  81 RDQEAQKVKALDAGADDYVTKPF 103
PRK10610      89 EAKKENIIAAAQAGASGYVVKPF 111

cl09944

142340

REC

Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC,...

-1

137960

PRK10529

DNA-binding transcriptional activator KdpE; Provisional

true

false

225

8e-59

222.03

99.56

2,0,0,130,130,131,93

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403   1 MASVLVVDDEPAIVRALRINLTARGYEVYTAFDGRTALQLVTAHKPDLMILDLGLPDMDGIDVIGGVRGWSTMPILVLSA 80
PRK10529       1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQWSAIPVIVLSA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403  81 RDQEAQKVKALDAGADDYVTKPFGMDELLARLRASIRRARPTSAEPRIIT-PDFTIDLADKTVRRGDEPIRLTPTEWHIL 159
PRK10529      81 RSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATPAPDPLVKfSDVTVDLAARVIHRGEEEVHLTPIEFRLL 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 117928403 160 DILARHAGRLVTTRQLLHDVWGPTYRNETHYLRVYMAQLRRKLEPDPAHPRYLRTEPGIGYRLV 223
PRK10529     161 AVLLNNAGKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPTRPRHFITETGIGYRFM 224

-1

31088

COG0745

OmpR

Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]

Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-...

false

true

false

229

9e-51

195.17

99.13

4,3,2,41,45,43,23,68,68,59,127,130,99

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403   4 VLVVDDEPAIVRALRINLTARGYEVYTAFDGRTALQLVTAHkPDLMILDLGLPDMDGIDVIGGVR--GWSTMPILVLSAR 81
COG0745        3 ILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAAREQ-PDLVLLDLMLPDLDGLELCRRLRakKGSGPPIIVLTAR 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403  82 DQEAQKVKALDAGADDYVTKPFGMDELLARLRASIRRARPTSAEPR---IITPDFTIDLADKTVRRGDEPIRLTPTEWHI 158
COG0745       82 DDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRNAGASRAEAsevLVFGDLTLDPDTRTVTLNGRELTLTPKEFEL 161

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 117928403 159 LDILARHAGRLVTTRQLLHDVWGPTYRNETHYLRVYMAQLRRKLEPDPAHPRYLRTEPGIGYRLVVEP 226
COG0745      162 LELLARHPGRVLSREQLLEAVWGYDFEVDSRTVDVHISRLRKKLEKDPGAGRLIRTVRGVGYRLEEPA 229

-1

133606

CHL00148

orf27

Ycf27; Reviewed

false

true

false

240

2e-46

181.01

93.75

3,3,8,128,131,142,54,185,198,35

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403   4 VLVVDDEPAIVRALRINLTARGYEVYTAFDGRTALQLVTAHKPDLMILDLGLPDMDGIDVIGGVRGWSTMPILVLSARDQ 83
CHL00148       9 ILVVDDEASIRRILETRLSIIGYEVITASDGEEALKLFHQEQPDLVILDVMMPKLDGYGVCQEIRKESDVPIIMLTALGD 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403  84 EAQKVKALDAGADDYVTKPFGMDELLARLRASIRRARPTSAEPRIITP------DFTIDLADKTVRRGDEPIRLTPTEWH 157
CHL00148      89 VSDRITGLELGADDYVVKPFSPKELEARIRSVLRRVNKISATSGPKNSgiirigFLEIDTNKKQVYKNNERIRLTGMEFS 168

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 117928403 158 ILDILARHAGRLVTTRQLLHDVWGPTYR--NETHYLRVYMAQLRRKLEPDPAHPRYLRTEPGIGY 220
CHL00148     169 LLELLISESGEIFSRATILKEVWGYTPErhIDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGY 233

-1

131209

TIGR02154

PhoB

phosphate regulon transcriptional regulatory protein PhoB

false

true

false

226

5e-40

159.42

98.67

3,1,2,70,71,75,134,206,209,16

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403   2 ASVLVVDDEPAIVRALRINLTARGYEVYTAFDGRTALQLVTAHKPDLMILDLGLPDMDGIDVIGGVRGWS---TMPILVL 78
TIGR02154      3 RRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINERGPDLILLDWMLPGTSGIELCRRLRRRPetrAIPIIML 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403  79 SARDQEAQKVKALDAGADDYVTKPFGMDELLARLRASIRRARPTSAEPRIITPDFTIDLADKTVRRGDEPIRLTPTEWHI 158
TIGR02154     83 TARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVLRRIRPQLSDEVIEVGDLSLDPVAHRVFRGGQPLSLGPTEFRL 162

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 117928403 159 LDILARHAGRLVTTRQLLHDVWGPTYRNETHYLRVYMAQLRRKLEPDpAHPRYLRTEPGIGYRL 222
TIGR02154    163 LHFFMTHPERVYSREQLLDRVWGRDVYVEERTVDVHIRRLRKALNPF-GLEDPVQTVRGAGYRF 225

-1

138195

PRK10816

DNA-binding transcriptional regulator PhoP; Provisional

false

true

false

223

2e-31

130.71

97.31

6,3,2,61,67,63,4,71,71,54,127,125,3,130,129,78,209,207,12

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403   4 VLVVDDEPAIVRALRINLTARGYEVYTAFDGRTALQLVTAHKPDLMILDLGLPDMDGIDVIggvRGWS----TMPILVLS 79
PRK10816       3 VLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNEHLPDIAIVDLGLPDEDGLSLI---RRWRsndvSLPILVLT 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403  80 ARDQEAQKVKALDAGADDYVTKPFGMDELLARLRASIRRARPTSAEprIIT-PDFTIDLADKTVRRGDEPIRLTPTEWHI 158
PRK10816      80 ARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGLASQ--VISlPPFQVDLSRRELSINDEVIKLTAFEYTI 157

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 117928403 159 LDILARHAGRLVTTRQLLHDVWGPTYRNETHYLRVYMAQLRRKLEPDPAHpRYLRTEPGIGYR 221
PRK10816     158 METLIRNNGKVVSKDSLMLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQ-EVITTVRGQGYL 219

-1

137310

PRK09468

ompR

osmolarity response regulator; Provisional

false

true

false

239

1e-30

128.57

94.98

4,3,7,68,71,76,51,122,132,8,130,141,93

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403   4 VLVVDDEPAIVRALRINLTARGYEVYTAFDGRTALQLVTAHKPDLMILDLGLPDMDGIDVIGGVRGWS-TMPILVLSARD 82
PRK09468       8 ILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTRESFHLMVLDLMLPGEDGLSICRRLRSQNnPTPIIMLTAKG 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403  83 QEAQKVKALDAGADDYVTKPFGMDELLARLRASIRRARPT-----SAEPRIIT-PDFTIDLADKTVRRGDEPIRLTPTEW 156
PRK09468      88 EEVDRIVGLEMGADDYLPKPFNPRELLARIRAVLRRQAPElpgapSQEEEVIAfGEFSLNLGTRELFRGDEPIPLTTGEF 167

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 117928403 157 HILDILARHAGRLVTTRQLLHDVWGPTYRNETHYLRVYMAQLRRKLEPDPAHPRYLRTEPGIGYRLV 223
PRK09468     168 AVLKALVRHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRLIEPDPAHPRYIQTVWGLGYVFV 234

-1

130454

TIGR01387

cztR_silR_copR

heavy metal response regulator

false

true

false

218

1e-29

125.30

100.00

4,3,0,70,73,71,47,121,118,82,204,200,18

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403   4 VLVVDDEPAIVRALRINLTARGYEVYTAFDGRTALQLVTAHKPDLMILDLGLPDMDGIDVIGGVRGWSTM-PILVLSARD 82
TIGR01387      1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLALKDDYDLIILDVMLPGMDGWQILQTLRRSGKQtPVLFLTARD 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403  83 QEAQKVKALDAGADDYVTKPFGMDELLARLRASIRRARpTSAEPRIITPDFTIDLADKTVRRGDEPIRLTPTEWHILDIL 162
TIGR01387     81 SVADKVKGLDLGADDYLVKPFSFSELLARVRTLLRRSH-SLNSTVLEIADLRMDSVRHRVSRGNIRITLTRKEFQLLWLL 159

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403 163 ARHAGRLVTTRQLLHDVWGPTYRNETHYLRVYMAQLRRKLEpDPAHPRYLRTEPGIGYRL 222
TIGR01387    160 MRRTGEVLPRTVIASLVWGMNFDSDTNVVDVAIRRLRAKVD-DPFEEKLIHTIRGMGYVL 218

-1

138611

PRK11517

transcriptional regulatory protein YedW; Provisional

false

true

false

223

9e-28

118.88

98.21

3,3,2,121,126,123,77,204,200,21

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403   4 VLVVDDEPAIVRALRINLTARGYEVYTAFDGRTALQLVTAHKPDLMILDLGLPDMDGIDVIGGVRGWSTMPILVLSARDQ 83
PRK11517       3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDS 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403  84 EAQKVKALDAGADDYVTKPFGMDELLARLRASIRRARPTSAepRIITPDFTIDLADKTVRRGDEPIRLTPTEWHILDILA 163
PRK11517      83 VDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHALNS--TLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLA 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 117928403 164 RHAGRLVTTRQLLHDVWGPTYRNETHYLRVYMAQLRRKLEpDPAHPRYLRTEPGIGYRLVVE 225
PRK11517     161 SRAGEIIPRTVIASEIWGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSFVAV 221

-1

138391

PRK11083

DNA-binding response regulator CreB; Provisional

false

true

false

229

1e-25

111.62

98.25

3,0,2,69,69,72,63,132,137,90

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403   1 MASVLVVDDEPAIVRALRINLTARGYEVYTAFDGRTALQLVTAHKPDLMILDLGLPDMDGIDVIGGVRG-WSTMPILVLS 79
PRK11083       3 QPTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQQPPDLVILDVGLPDISGFELCRQLRAfHPALPVIFLT 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403  80 ARDQEAQKVKALDAGADDYVTKPFGMDELLARLRASIRRARPTSAEPRIITPD--FTIDLADKTVRRGDEPIRLTPTEWH 157
PRK11083      83 ARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILRRVKKFAAPSPVIRIAghFELDEPGARISYFGTPLSLTRYEFL 162

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 117928403 158 ILDILARHAGRLVTTRQLLHDVWGPTYRNETHYLRVYMAQLRRKLEPDPAHPRYLRTEPGIGYRL 222
PRK11083     163 LLKTLLLSPGRVFSRQQLMDIVWEDAQDSYDRTVDTHIKTLRAKLRAINPDLSPIRTHRGLGYSL 227

-1

138051

PRK10643

DNA-binding transcriptional regulator BasR; Provisional

false

true

false

222

2e-25

110.57

99.10

8,3,2,68,71,71,49,121,120,49,171,169,6,177,176,3,182,179,5,187,186,18,210,204,18

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403   4 VLVVDDEPAIVRALRINLTARGYEVYTAFDGRTALQLVTAHKPDLMILDLGLPDMDGIDVIGGVRGWS-TMPILVLSARD 82
PRK10643       3 ILIVEDDTLLLQGLILAAQTEGYACDGVSTAREAEQSLESGHYSLVVLDLGLPDEDGLHFLARIRQKKyTLPVLILTARD 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403  83 QEAQKVKALDAGADDYVTKPFGMDELLARLRASIRRARpTSAEPRIITPDFTIDLADKTVRRGDEPIRLTPTEWHILDIL 162
PRK10643      83 TLEDRIAGLDVGADDYLVKPFALEELHARIRALLRRHN-NQGESELQVGNLTLNLGRQQVWLDGQELILTPKEYALLSRL 161

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 117928403 163 ARHAGRLVtTRQLLH-DVWgpTYRNE--THYLRVYMAQLRRKLEPDpahprYLRTEPGIGYRLVVEPTP 228
PRK10643     162 MLKAGSPV-HREILYnDIY--NWDNEpsTNTLEVHIHNLRDKVGKD-----RIRTVRGFGYMLVANEEN 222

-1

137546

PRK09836

DNA-binding transcriptional activator CusR; Provisional

false

true

false

226

2e-25

110.49

97.79

3,3,2,69,72,72,133,206,205,18

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403   4 VLVVDDEPAIVRALRINLTARGYEVYTAFDGRTALQLVTAHKPDLMILDLGLPDMDGIDVIGGVRGWST-MPILVLSARD 82
PRK09836       3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDIVRMLRSANKgMPILLLTALG 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403  83 QEAQKVKALDAGADDYVTKPFGMDELLARLRASIRRARPTSAEPRIITPDFTIDLADKTVRRGDEPIRLTPTEWHILDIL 162
PRK09836      83 TIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFF 162

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 117928403 163 ARHAGRLVTTRQLLHDVWGPTYRNETHYLRVYMAQLRRKLEPDpAHPRYLRTEPGIGYRLVV 224
PRK09836     163 LRHQGEVLPRSLIASQVWDMNFDSDTNAIDVAVKRLRGKIDND-FEPKLIQTVRGVGYMLEV 223

-1

104359

PRK10161

transcriptional regulator PhoB; Provisional

false

true

false

229

2e-24

107.50

96.51

3,3,4,69,72,76,131,204,207,18

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403   4 VLVVDDEPAIVRALRINLTARGYEVYTAFDGRTALQLVTAHKPDLMILDLGLPDMDGIDVIGGVRGWST---MPILVLSA 80
PRK10161       5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRESMtrdIPVVMLTA 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403  81 RDQEAQKVKALDAGADDYVTKPFGMDELLARLRASIRRARPTSAEPRIITPDFTIDLADKTVRRGDEPIRLTPTEWHILD 160
PRK10161      85 RGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLH 164

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 117928403 161 ILARHAGRLVTTRQLLHDVWGPTYRNETHYLRVYMAQLRRKLEpDPAHPRYLRTEPGIGYRL 222
PRK10161     165 FFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALE-PGGHDRMVQTVRGTGYRF 225

-1

138153

PRK10766

DNA-binding transcriptional regulator TorR; Provisional

false

true

false

224

2e-22

100.89

95.54

4,2,3,129,131,143,48,182,191,10,192,204,13

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403   3 SVLVVDDEPAIVRALRINLTARGYEVYTAFDGRTALQLVTAHKPDLMILDLGLPDMDGIDVIGGVRGWSTMPILVLSARD 82
PRK10766       4 HILVVEDEPVTRARLQGYFEQEGYRVSEAASGAGMREIMQNQHVDLILLDINLPGEDGLMLTRELRSRSTVGIILVTGRT 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403  83 QEAQKVKALDAGADDYVTKPFGMDELLARLRASIRRARPTSAEPRIITP-----------DFTIDLADKTVRRGDEPIRL 151
PRK10766      84 DSIDRIVGLEMGADDYVTKPFELRELLVRVKNLLWRISLARQAQAVAEQpetqdncyrfaGYCLNVNRRTLERNGEPIKL 163

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 117928403 152 TPTEWHILDILARHAGRLVTTRQLLHDVwgpTYRNETHYLR---VYMAQLRRKLEPD 205
PRK10766     164 TKAEYELLVAFVTNPGQVLSRERLLRML---SHRVEDPNDRtidVLIRRLRHKLNPD 217

-1

138104

PRK10710

DNA-binding transcriptional regulator BaeR; Provisional

false

true

false

240

4e-22

100.20

91.67

5,2,11,119,121,132,10,132,142,49,182,191,6,188,198,33

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403   3 SVLVVDDEPAIVRALRINLTARGYEVYTAFDGRTALQLVTAHKPDLMILDLGLPDMDGIDVIGGVRGWSTMPILVLSARD 82
PRK10710      12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDEVLPYVRQTPPDLILLDLMLPGTDGLTLCREIRRFSDIPIVMVTAKI 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403  83 QEAQKVKALDAGADDYVTKPFGMDELLARLRASIRRARP--TSAEPRIITPdFTIDLADKTVRRGDEPIRLTPTEWHILD 160
PRK10710      92 EEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPqrELQQQDAESP-LIIDESRFQASWRGKMLDLTPAEFRLLK 170

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 117928403 161 ILARHAGRLVTTRQLLHDVWGpTYRNET-HYLRVYMAQLRRKLEPDPAHPRYLRTEPGIGYR 221
PRK10710     171 TLSHEPGKVFSREQLLNHLYD-DYRVVTdRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYR 231

-1

32386

COG2204

AtoC

Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]

Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding...

false

true

false

464

9e-21

95.36

23.28

2,0,3,72,72,76,35

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403   1 MASVLVVDDEPAIVRALRINLTARGYEVYTAFDGRTALQLVTAHKPDLMILDLGLPDMDGIDVIGGVRGWST-MPILVLS 79
COG2204        4 MARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSESPFDLVLLDIRMPGMDGLELLKEIKSRDPdLPVIVMT 83

                         90       100
                 ....*....|....*....|....*...
gi 117928403  80 ARDQEAQKVKALDAGADDYVTKPFGMDE 107
COG2204       84 GHGDIDTAVEALRLGAFDFLEKPFDLDR 111

-1

139916

PRK13856

two-component response regulator VirG; Provisional

false

true

false

241

1e-20

94.89

93.36

7,0,0,79,79,80,47,126,129,4,130,134,10,140,145,36,179,181,13,192,197,28

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403   1 MASVLVVDDEPAIVRALRINLTARGYEVYTAFDGRTALQLVTAHKPDLMILDLGLPDMDGIDVIGGVRGWSTMPILVLS- 79
PRK13856       1 MKHVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLSSETVDVVVVDLNLGREDGLEIVRSLATKSDVPIIIISg 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403  80 ARDQEAQKVKALDAGADDYVTKPFGMDELLARLRASIRRARPTSAEP--RIIT-PDFTIDLADK-TVRRGDEPIRLTPTE 155
PRK13856      81 DRLEEADKVVALELGATDFIAKPFGTREFLARIRVALRVRPNVVRTKdrRSFCfADWTLNLRQRrLISEAGGEVKLTAGE 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 117928403 156 WHILDILARHAGRLVTTRQLLhdvWGPTYRNETHYLR---VYMAQLRRKLEPDPAHPRYLRTEPGIGY 220
PRK13856     161 FNLLVAFLEKPRDVLSREQLL---IASRVREEEVYDRsidVLILRLRRKLEQDPANPQLIKTARGAGY 225

-1

137827

PRK10336

DNA-binding transcriptional regulator QseB; Provisional

false

true

false

219

1e-20

95.00

97.72

6,3,2,61,67,63,3,70,70,37,107,108,20,129,128,76,210,204,12

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403   4 VLVVDDEPAIVRALRINLTARGYEVYTAFDGRTALQLVTAHKPDLMILDLGLPDMDGIDVIggvRGW----STMPILVLS 79
PRK10336       3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDIL---REWrekgQREPVLILT 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403  80 ARDQEAQKVKALDAGADDYVTKPFGMDE-LLARLRASIRRARPTSAEPRiiTPDFTIDLADKTVRRGDEPIRLTPTEWHI 158
PRK10336      80 ARDALAERVEGLRLGADDYLCKPFALIEvAARLEALMRRTNGQASNELR--HGNVMLDPGKRIATLAGEPLTLKPKEFAL 157

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 117928403 159 LDILARHAGRLVTTRQLLHDVWGPTYRNETHYLRVYMAQLRRKLEPDpahprYLRTEPGIGYRL 222
PRK10336     158 LELLMRNAGRVLPRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTL 216

-1

137400

PRK09581

pleD

response regulator PleD; Reviewed

false

true

false

457

2e-20

94.22

22.98

2,0,1,63,63,67,39

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403   1 MASVLVVDDEPAIVRALRINLTARGYEVYTAFDGRTALQLVTAHKPDLMILDLGLPDMDGIDV---IGGVRGWSTMPILV 77
PRK09581       2 TARILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIEICEREQPDIILLDVMMPGMDGFEVcrrLKSDPATAHIPVVM 81

                         90       100
                 ....*....|....*....|....*
gi 117928403  78 LSARDQEAQKVKALDAGADDYVTKP 102
PRK09581      82 VTALDDPSDRVRGLEAGADDFLTKP 106

-1

138305

PRK10955

DNA-binding transcriptional regulator CpxR; Provisional

false

true

false

232

2e-20

94.12

98.71

5,0,0,43,44,43,101,145,151,57,202,209,7,210,216,13

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403   1 MASVLVVDDEPAIVRALRINLTARGYEVYTAFDGRTALQLVTAhKPDLMILDLGLPDMDGIDVIGGVRGWSTMPILVLSA 80
PRK10955       1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGIDTLKALRQTHQTPVIMLTA 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403  81 RDQEAQKVKALDAGADDYVTKPFGMDELLARLRASIRRARPTSAEPRIITPDFTIDLADKTVRRG-------DEPIRLTP 153
PRK10955      80 RGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSEQQQNNDNGSPTLEVDALSLNPGrqeasfdGQTLELTG 159

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 117928403 154 TEWHILDILARHAGRLVTTRQLLHDVWGPTYRNETHYLRVYMAQLRRKL-EPDPAHPrYLRTEPGIGYRLV 223
PRK10955     160 TEFTLLYLLAQHLGQVVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLpDRKDGHP-WFKTLRGRGYLMV 229

-1

33501

COG3706

PleD

Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]

Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal...

false

true

false

435

4e-18

86.51

24.37

2,0,131,70,70,204,33

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403   1 MASVLVVDDEPAIVRALRINLTARGYEVYTAFDGRTALQLVTAHKPDLMILDLGLPDMDGIDVIGGVRGW---STMPILV 77
COG3706      132 PKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAELPPDLVLLDANMPDMDGLELCTRLRQLertRDIPIIL 211

                         90       100
                 ....*....|....*....|....*.
gi 117928403  78 LSARDQEAQKVKALDAGADDYVTKPF 103
COG3706      212 LSSKDDDELVVRAFELGVNDYITKPI 237

-1

34367

COG4753

Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]

Response regulator containing CheY-like receiver domain and AraC-type DNA-binding...

false

true

false

475

1e-17

84.60

23.37

4,0,0,18,18,20,9,27,30,44,71,75,36

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403   1 MASVLVVDDEPAIVRALR--INLTARGYE-VYTAFDGRTALQLVTAHKPDLMILDLGLPDMDGIDVIGGVRGWS-TMPIL 76
COG4753        1 MYKVLIVDDEPLIREGLKslIDWEALGIEvVGTAANGKEALELIQETQPDIVITDINMPGMDGLDLIKAIKEQSpDTEFI 80

                         90       100       110
                 ....*....|....*....|....*....|.
gi 117928403  77 VLSARDQEAQKVKALDAGADDYVTKPFGMDE 107
COG4753       81 ILSGYDEFEYAKKAMKLGVKDYLLKPVDKAE 111

-1

138540

PRK11361

acetoacetate metabolism regulatory protein AtoC; Provisional

false

true

false

457

8e-17

82.20

22.98

2,3,6,69,72,76,35

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403   4 VLVVDDEPAIVRALRINLTARGYEVYTAFDGRTALQLVTAHKPDLMILDLGLPDMDGIDVIGGVRGWST-MPILVLSARD 82
PRK11361       7 ILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIKALKEMRSHETrTPVILMTAYA 86

                         90       100
                 ....*....|....*....|....*
gi 117928403  83 QEAQKVKALDAGADDYVTKPFGMDE 107
PRK11361      87 EVETAVEALRCGAFDYVIKPFDLDE 111

-1

32379

COG2197

CitB

Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]

Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain...

false

true

false

211

1e-16

81.92

76.30

6,2,1,23,25,25,3,28,29,41,69,71,45,121,116,29,150,148,14

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403   3 SVLVVDDEPAIVRALRINLTARG-YEV-YTAFDGRTALQLVTAHKPDLMILDLGLPDMDGIDVIGGVRG-WSTMPILVLS 79
COG2197        2 KVLIVDDHPLVREGLRQLLELEPdLEVvGEASNGEEALDLARELKPDVVLLDLSMPGMDGLEALKQLRArGPDIKVVVLT 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403  80 ARDQEAQKVKALDAGADDYVTKPFGMDELLARLRAsirrarpTSAEPRIITPDFTIDLADKTVRRGDEPIR---LTPTEW 156
COG2197       82 AHDDPAYVIRALRAGADGYLLKDASPEELVEAIRA-------VAAGGTYLPPDIARKLAGLLPSSSAEAPLaelLTPREL 154


                 ....*...
gi 117928403 157 HILDILAR 164
COG2197      155 EVLRLLAE 162

-1

138091

PRK10693

response regulator of RpoS; Provisional

false

true

false

337

3e-16

80.13

29.67

3,3,9,65,68,76,4,73,80,29

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403   4 VLVVDDEPAIVRALRINLTARGYEVYTAFDGRTALQLVTAHKPDLMILDLGLPDMDGIDVIGGVR--GWSTmPILVLSAR 81
PRK10693      10 ILIVEDEPVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKFVEHLRnrGDQT-PVLVISAT 88

                         90       100
                 ....*....|....*....|.
gi 117928403  82 DQEAQKVKALDAGADDYVTKP 102
PRK10693      89 ENMADIAKALRLGVEDVLLKP 109

-1

33243

COG3437

Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]

Response regulator containing a CheY-like receiver domain and an HD-GYP domain [...

false

true

false

360

6e-16

79.57

30.83

2,0,13,71,71,88,36

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403   1 MASVLVVDDEPAIVRALRINLTARGYEVYTAFDGRTALQLVTAHKPDLMILDLGLPDMDGIDVIGGVRGWS----TMPIL 76
COG3437       14 KLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQEEPPDLVLLDVRMPEMDGAEVLNKLKAMSpstrRIPVI 93

                         90       100       110
                 ....*....|....*....|....*....|.
gi 117928403  77 VLSARDQEAQKVKALDAGADDYVTKPFGMDE 107
COG3437       94 LLTAYADSEDRQRALEAGADDYLSKPISPKE 124

-1

33728

COG3947

Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Response regulator containing CheY-like receiver and SARP domains [Signal transduction...

false

true

false

361

3e-15

76.93

55.68

6,2,1,68,70,70,15,87,85,38,129,123,21,150,147,33,183,181,21

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403   3 SVLVVDDEPAIVRALRINLTARGYEVYTAFDGRTALQLVTAHKPDLMILDLGLPDMDGIDVIGGVRGW-STMPILVLSAR 81
COG3947        2 RIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEVFKPDLIFLDIVMPYMNGIEFAEQVRDIeSAVPIIFISSH 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403  82 DQEAqkVKALDAGADDYVTKPFGMDELLARLRASIRRARPTSAEpriiTPDFTIDLADKTVRRGDEPIR---LTPTEWHI 158
COG3947       82 AEYA--DDSFGMNLDDYLPKPVTPEKLNRAIDRRLKRVELTAEE----ESGTQISCFGGTEVVLRQGQQvkwISRKALEL 155

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 117928403 159 LDILARHAGRLVTTRQLLHDVWGPT-YRNETHYLRVYMAQLRRKLEP 204
COG3947      156 FAYLVEHKGKEVTSWEAIEALWPEKdEKKASSLLHTTVYQLRKALSR 202

-1

138454

PRK11173

two-component response regulator; Provisional

false

true

false

237

9e-15

75.49

95.36

3,3,5,123,126,135,15,141,151,80

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403   4 VLVVDDEPAIVRALRINLTARGYEVYTAFDGRTALQLVTAHKPDLMILDLGLPDMDGIDVIGGVRGWSTMPILVLSARDQ 83
PRK11173       6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSENDINLVIMDINLPGKNGLLLARELREQANVALMFLTGRDN 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403  84 EAQKVKALDAGADDYVTKPFGMDELLARLRASIRRARPTSAEP-------RIITPDFTIDLADKT-VRRGDEPIRLTPTE 155
PRK11173      86 EVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLGTVSeerrsveSYKFNGWELDINSRSlISPDGEQYKLPRSE 165

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 117928403 156 WHILDILARHAGRLVTTRQLLHDVWGPTYRNETHYLRVYMAQLRRKLEPDPAHPRYLRTEPGIGYR 221
PRK11173     166 FRAMLHFCENPGKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYR 231

-1

130877

TIGR01818

ntrC

nitrogen regulation protein NR(I)

false

true

false

463

2e-14

74.77

22.68

2,3,0,66,69,67,38

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403   4 VLVVDDEPAIVRALRINLTARGYEVYTAFDGRTALQLVTAHKPDLMILDLGLPDMDGIDVIGGVRG-WSTMPILVLSARD 82
TIGR01818      1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALARGQPDLLITDVRMPGEDGLDLLPQIKKrHPQLPVIVMTAHS 80

                         90       100
                 ....*....|....*....|....*
gi 117928403  83 QEAQKVKALDAGADDYVTKPFGMDE 107
TIGR01818     81 DLDTAVAAYQRGAFEYLPKPFDLDE 105

-1

134369

PRK00742

chemotaxis-specific methylesterase; Provisional

false

true

false

345

2e-14

74.05

30.43

4,3,4,20,23,25,5,28,31,60,88,93,16

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403   4 VLVVDDEPAIVRALRINLTA-RGYEV-YTAFDGRTALQLVTAHKPDLMILDLGLPDMDGIDVIGGVRGWSTMPILVLSAR 81
PRK00742       5 VLVVDDSAFMRRLLSEILNSdPDIEVvGTARDGLEAVEKIKKLNPDVITLDVEMPVMDGIEALRKIMALRPTPVVMVSSL 84

                         90       100
                 ....*....|....*....|....*
gi 117928403  82 DQEAQKV--KALDAGADDYVTKPFG 104
PRK00742      85 TERGAEItlEALELGAVDFVPKPFL 109

-1

138099

PRK10701

DNA-binding transcriptional regulator RstA; Provisional

false

true

false

240

6e-14

72.83

96.25

3,0,0,101,101,105,31,132,143,88

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403   1 MASVLVVDDEPAIVRALRINLTARGYEVYTAFDGRTALQLVTAHKPDLMILDLGLPDMDGIDVIGGVRGWSTMPILVLSA 80
PRK10701       1 MNTIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEETILREQPDLVLLDIMLPGKDGMTICRDLRPKWSGPIVLLTS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403  81 RDQEAQKVKALDAGADDYVTK----PFGMDELLARLRASIRRARPTSAEPRIITPD-------FTIDLADKTVRRGDEPI 149
PRK10701      81 LDSDMNHILALEMGACDYILKttppAVLLARLRLHLRQNEQATQAKGLQETSLTPYkalhfgtLTIDPINRVVTLAGEEI 160

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 117928403 150 RLTPTEWHILDILARHAGRLVTTRQLLHDVWGPTYRNETHYLRVYMAQLRRKLEPDPAHPRYLRTEPGIGY 220
PRK10701     161 SLSTADFELLWELATHAGQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGY 231

-1

32383

COG2201

CheB

Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]

Chemotaxis response regulator containing a CheY-like receiver domain and a...

false

true

false

350

7e-14

72.62

30.86

3,0,0,18,18,20,70,88,92,16

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403   1 MASVLVVDDEPAIVRALR--INLTARGYEVYTAFDGRTALQLVTAHKPDLMILDLGLPDMDGIDVIGGVRGWSTMPILVL 78
COG2201        1 KIRVLVVDDSALMRKVISdiLNSDPDIEVVGTARNGREAIDKVKKLKPDVITLDVEMPVMDGLEALRKIMRLRPLPVIMV 80

                         90       100
                 ....*....|....*....|....*...
gi 117928403  79 SARDQEAQKV--KALDAGADDYVTKPFG 104
COG2201       81 SSLTEEGAEAtlEALELGAVDFIAKPSG 108

-1

139064

PRK12555

chemotaxis-specific methylesterase; Provisional

false

true

false

340

3e-12

67.34

31.18

5,0,0,24,24,25,4,28,30,53,81,84,7,88,92,14

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403   1 MASVLVVDDEPAIVRALRINLTAR-GYEV-YTAFDGRTALQLVTAHKPDLMILDLGLPDMDGIDVIGGVRGWSTMPILVL 78
PRK12555       1 PMNVGIVDDSALAREALRRIIARRpDHRVlGVATDGLQARDLCKAQPPDVVLLDLEMPRMDGLTFLRRIMRRRPCPVLIV 80

                         90       100
                 ....*....|....*....|....*.
gi 117928403  79 SAR-DQEAQKV-KALDAGADDYVTKP 102
PRK12555      81 SSLtEAGASITyEALGAGALDAVDKP 106

-1

131922

TIGR02875

spore_0_A

sporulation transcription factor Spo0A

false

true

false

262

2e-11

64.43

41.60

5,2,3,22,24,26,5,29,32,43,72,77,2,74,80,32

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403   3 SVLVVDDEPAIVRALRINLTAR-GYEVY-TAFDGRTALQLVTAHKPDLMILDLGLPDMDGIDVIGGVRGWST--MP-ILV 77
TIGR02875      4 RIVIADDNKEFCNLLKEYLAAQpDMEVVgVAHNGVDALELIKEQQPDVVVLDIIMPHLDGIGVLEKLNEIELsaRPrVIM 83

                         90       100
                 ....*....|....*....|....*....
gi 117928403  78 LSARDQEAQKVKALDAGADDYVTKPFGMD 106
TIGR02875     84 LSAFGQEKITQRAVALGADYYVLKPFDLE 112

-1

138058

PRK10651

transcriptional regulator NarL; Provisional

false

true

false

216

5e-11

63.16

47.69

4,1,6,17,18,25,50,68,77,5,74,82,27

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403   2 ASVLVVDDEPAIVRALR--INLTARGYEVYTAFDGRTALQLVTAHKPDLMILDLGLPDMDGIDVIGGVR--GWSTMpILV 77
PRK10651       7 ATILLIDDHPMLRTGVKqlISMAPDITVVGEASNGEQGIELAESLDPDLILLDLNMPGMNGLETLDKLRekSLSGR-IVV 85

                         90       100
                 ....*....|....*....|....
gi 117928403  78 LSARDQEAQKVKALDAGADDYVTK 101
PRK10651      86 FSVSNHEEDVVTALKRGADGYLLK 109

-1

137612

PRK09959

hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional

false

true

false

1197

6e-11

62.83

8.77

2,2,959,68,70,1028,36

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403    3 SVLVVDDEPAIVRALRINLTARGYEVYTAFDGRTALQLVTAHKPDLMILDLGLPDMDGIDVIGGVRGW-STMPILVLSAR 81
PRK09959      960 SILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFELTRKLREQnSSLPIWGLTAN 1039

                          90       100
                  ....*....|....*....|....*
gi 117928403   82 DQEAQKVKALDAGADDYVTKPFGMD 106
PRK09959     1040 AQANEREKGLNCGMNLCLFKPLTLD 1064

-1

137850

PRK10365

transcriptional regulatory protein ZraR; Provisional

false

true

false

441

7e-11

62.74

29.02

2,3,7,68,71,76,59

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403   4 VLVVDDEPAIVRALRINLTARGYEVYTAFDGRTALQLVTAHKPDLMILDLGLPDMDGIDVIGGVRGWS-TMPILVLSARD 82
PRK10365       8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIATLKEIKALNpAIPVLIMTAYS 87

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 117928403  83 QEAQKVKALDAGADDYVTKPFGMDELLARLRASIRRARPTSAEPRIIT 130
PRK10365      88 SVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSIDAETPAVS 135

-1

34205

COG4567

Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]

Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [..

false

true

false

182

1e-10

61.90

85.16

4,2,10,68,70,79,37,128,116,28,156,145,20

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403   3 SVLVVDDEPAIVRALRINLTARGYEVYTAFDGRTALQLVTAHKPDLMILDLGLPDMDGIDVIGGVRGW-STMPILVLSAR 81
COG4567       11 SLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAARTAPPAYAVVDLKLGDGSGLAVIEALRERrADMRIVVLTGY 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403  82 DQEAQKVKALDAGADDYVTKPFGMDEllarlrasirrarptsaepriITPDFTIDLADKTVRRGDEPIRLTPTEW-HILD 160
COG4567       91 ASIATAVEAVKLGACDYLAKPADADD---------------------ILAALLRREPDEDTAPPENPMSADRLRWeHIQR 149

                        170
                 ....*....|....*.
gi 117928403 161 ILARHAGRLVTTRQLL 176
COG4567      150 VLEECEGNISETARRL 165

-1

137611

PRK09958

DNA-binding transcriptional activator EvgA; Provisional

false

true

false

204

2e-10

60.68

50.98

3,4,3,28,32,32,39,71,72,35

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403   5 LVVDDEPAIVRALRINLTARGYEVYTAF-DGRTALQLVTAHKPDLMILDLGLPDMDGIDVIGGVRGWS-TMPILVLSARD 82
PRK09958       4 IIIDDHPLAIAAIRNLLIKNDIEILAELtEGGSAVQRVETLKPDIVIIDVDIPGVNGIQVLETLRKRQySGIIIIVSAKN 83

                         90       100
                 ....*....|....*....|....
gi 117928403  83 QEAQKVKALDAGADDYVTKPFGMD 106
PRK09958      84 DHFYGKHCADAGANGFVSKKEGMN 107

-1

138212

PRK10841

hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional

false

true

false

947

4e-10

60.06

10.98

2,3,826,68,71,895,35

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403   4 VLVVDDEPAIVRALRINLTARGYEVYTAFDGRTALQLVTAHKPDLMILDLGLPDMDGIDVIGGVRGWS-TMPILVLSARD 82
PRK10841     827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRLTQRIRQLGlTLPVIGVTANA 906

                         90       100
                 ....*....|....*....|....
gi 117928403  83 QEAQKVKALDAGADDYVTKPFGMD 106
PRK10841     907 LAEEKQRCLEAGMDSCLSKPVTLD 930

-1

138282

PRK10923

glnG

nitrogen regulation protein NR(I); Provisional

false

true

false

469

6e-10

59.55

22.39

2,3,5,65,68,71,39

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403   4 VLVVDDEPAIVRALRINLTARGYEVYTAFDGRTALQLVTAHKPDLMILDLGLPDMDGIDVIGGVR-GWSTMPILVLSARD 82
PRK10923       6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALASKTPDVLLSDIRMPGMDGLALLKQIKqRHPMLPVIIMTAHS 85

                         90       100
                 ....*....|....*....|....*
gi 117928403  83 QEAQKVKALDAGADDYVTKPFGMDE 107
PRK10923      86 DLDAAVSAYQQGAFDYLPKPFDIDE 110

-1

131961

TIGR02915

PEP_resp_reg

putative PEP-CTERM system response regulator

false

true

false

445

8e-10

58.99

24.27

5,3,0,18,23,18,32,55,51,5,62,56,11,73,74,34

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403   4 VLVVDDEPAIVRALRINLtaRGYEVYTAFDGRTALQLVTAHKPDLMILDLGL-PDMDGidVIGGVRGWSTM-------PI 75
TIGR02915      1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVRRHEPAVVTLDLGLpPDADG--ASEGLAALQQIlaiapdtKV 76

                         90       100       110
                 ....*....|....*....|....*....|..
gi 117928403  76 LVLSARDQEAQKVKALDAGADDYVTKPFGMDE 107
TIGR02915     77 IVITGNDDRENAVKAIGLGAYDFYQKPIDPDV 108

-1

34204

COG4566

TtrR

Response regulator [Signal transduction mechanisms]

false

true

false

202

2e-09

57.94

51.49

2,0,3,70,70,74,33

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403   1 MASVLVVDDEPAIVRALRINLTARGYEVYTAFDGRTALQLVTAHKPDLMILDLGLPDMDGIDVIGGVRGW-STMPILVLS 79
COG4566        4 EPLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAPLDRPGCLLLDVRMPGMSGLELQDRLAERgIRLPVIFLT 83

                         90       100
                 ....*....|....*....|....
gi 117928403  80 ARDQEAQKVKALDAGADDYVTKPF 103
COG4566       84 GHGDIPMAVQAMKAGAVDFLEKPF 107

-1

137869

PRK10403

transcriptional regulator NarP; Provisional

false

true

false

215

2e-09

57.56

46.98

3,3,8,15,18,25,49,67,75,34

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403   4 VLVVDDEPAIVRALR--INLTARGYEVYTAFDGRTALQLVTAHKPDLMILDLGLPDMDGIDVIGGV-RGWSTMPILVLSA 80
PRK10403       9 VLIVDDHPLMRRGVRqlLELDPGFEVVAEAGDGASAIDLANRLDIDVILLDLNMKGMSGLDTLNALrRDGVTAQIIILTV 88

                         90       100
                 ....*....|....*....|.
gi 117928403  81 RDQEAQKVKALDAGADDYVTK 101
PRK10403      89 SDASSDIFALIDAGADGYLLK 109

-1

34203

COG4565

CitB

Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]

Response regulator of citrate/malate metabolism [Transcription / Signal transduction...

false

true

false

224

6e-09

55.99

45.98

4,3,2,10,13,14,61,74,77,13,88,90,15

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403   4 VLVVDDEPAI--VRALRINLTARGYEVYTAFDGRTALQLVTAHKPDLMILDLGLPDMDGIDVIGGVRGWSTMP--ILVLS 79
COG4565        3 VLIIEDDPMVaeIHRRYVKQIPGFSVVGTAGTLEEAKMIIEEFKPDLILLDIYMPDGNGIELLPELRSQHYPVdvIVITA 82

                         90       100
                 ....*....|....*....|....
gi 117928403  80 ARDQEAQKvKALDAGADDYVTKPF 103
COG4565       83 ASDMETIK-EALRYGVVDYLIKPF 105

-1

137244

PRK09390

fixJ

response regulator FixJ; Provisional

false

true

false

202

2e-08

54.65

52.48

4,1,3,27,29,30,8,37,39,33,70,73,36

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403   2 ASVLVVDDEPAIVRALRINLTARGYEVyTAFDGRTA-LQLVTAHKPDLMILDLGLPDMDGIDVIGGVRGW-STMPILVLS 79
PRK09390       4 GVVHVVDDDEAMRDSLAFLLDSAGFEV-RLFESAQAfLDALPGLRFGCVVTDVRMPGIDGIELLRRLKARgSPLPVIVMT 82

                         90       100
                 ....*....|....*....|....*..
gi 117928403  80 ARDQEAQKVKALDAGADDYVTKPFGMD 106
PRK09390      83 GHGDVPLAVEAMKLGAIDFIEKPFEDE 109

-1

138409

PRK11107

hybrid sensory histidine kinase BarA; Provisional

false

true

false

920

4e-08

53.36

15.54

6,2,669,10,12,682,5,20,687,51,71,741,31,104,772,17,121,797,15

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403   3 SVLVVDDEPA---IVRALrinLTARGYEVYTAFDGRTALQLVTAHKPDLMILDLGLPDMDGIDVIGGVRGWS---TMPIL 76
PRK11107     670 TVMAVDDNPAnlkLIGAL---LEEQVEHVVLCDSGHQAVELAKQRPFDLIFMDIQMPGMDGIRACELIRQLPhnqNTPII 746

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 117928403  77 VLSARDQEAQKVKALDAGADDYVTKPfgMDELLARLRASIRRARP--------TSAEPRIITPDFTID 136
PRK11107     747 AVTAHAMAGERERLLGAGMDDYLAKP--IDEAALKQVLLRWKPGPkfssrvvtPEVAEIIVNPNATLD 812

-1

132001

TIGR02956

TMAO_torS

TMAO reductase sytem sensor TorS

false

true

false

968

5e-08

52.86

11.36

2,1,702,67,68,773,39

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403   2 ASVLVVDDEPAIVRALRINLTARGYEVYTAFDGRTALQLVTAHKPDLMILDLGLPDMDGIDVIGGVR----GWSTMPILV 77
TIGR02956    703 QRVLLVEDNEVNQMVAQGFLTRLGHKVTLAESGQSALECFHQHAFDLALLDINLPDGDGVTLLQQLRaiygAKNEVKFIA 782

                         90       100       110
                 ....*....|....*....|....*....|
gi 117928403  78 LSARDQEAQKVKALDAGADDYVTKPFGMDE 107
TIGR02956    783 FSAHVFNEDVAQYLAAGFDGFLAKPVVEEQ 812

-1

33090

COG3279

LytT

Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]

Response regulator of the LytR/AlgR family [Transcription / Signal transduction...

false

true

false

244

1e-07

51.89

44.26

5,0,0,24,24,25,11,35,37,33,68,71,17,87,88,20

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403   1 MASVLVVDDEPAIVRALRINLTAR-GYEVYTAFDGR-TALQLVTAHKPDLMILDLGLPDMDGIDVIGGVR-GWSTMPILV 77
COG3279        1 MLKVLIVDDEPLAREELRRILNEIpDIEIVGEAENGeEALQLLQGLRPDLVFLDIAMPDINGIELAARIRkGDPRPAIVF 80

                         90       100       110
                 ....*....|....*....|....*....|
gi 117928403  78 LSARDQEAqkVKALDAGADDYVTKPFGMDE 107
COG3279       81 VTAHDEYA--VAAFEVEALDYLLKPISEER 108

-1

33501

COG3706

PleD

Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]

Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal...

false

true

false

435

1e-07

51.84

20.23

2,13,0,56,70,56,32

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403  14 VRALRINLTARGYEVYTAFDGRTALQLVTAHKPDLMILDLGLPDMDGIDVIGGVRGwSTMPILVLSARDQEAQKVKALDA 93
COG3706        1 VKLLEAKLPLEYKEVATAKKGLIALAILLDHKPDYKLLDVMMPGMDGFELCRRLKA-EPATVVMVTALDDSAPRVRGLKA 79


                 ....*....
gi 117928403  94 GADDYVTKP 102
COG3706       80 GADDFLTKP 88

-1

33502

COG3707

AmiR

Response regulator with putative antiterminator output domain [Signal transduction mechanisms]

Response regulator with putative antiterminator output domain [Signal transduction...

false

true

false

194

2e-07

51.40

52.58

2,3,7,27,30,35,74

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403   4 VLVVDDEPAIVRALRINLTARGYEVYT-AFDGRTALQLVTAHKPDLMILDLGLPDMDGIDVIGGVRGWSTMPILVLSARD 82
COG3707        8 VLVADDEALTRMDIREGLLEAGYQRVGeAADGLEAVEVCERLQPDVVILDIEMPRRDIIEALLLASENVARPIVALTAYS 87

                         90       100
                 ....*....|....*....|..
gi 117928403  83 QEAQKVKALDAGADDYVTKPFG 104
COG3707       88 DPALIEAAIEAGVMAYIVKPLD 109

-1

138397

PRK11091

aerobic respiration control sensor protein ArcB; Provisional

false

true

false

779

2e-07

51.15

13.22

4,2,526,66,68,595,9,77,605,10,88,615,14

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403   3 SVLVVDDEPAIVRALRINLTARGYEVYTAFDGRTALQLVTAHKPDLMILDLGLPDMDGIDVIGGVR---GWSTMPILV-L 78
PRK11091     527 NILLVEDIELNVIVARSLLEKLGNSVDVAMTGKDALEMFKPGEYDLVLLDIQLPDMTGLDVARELReryGREDLPPLVaL 606

                         90       100
                 ....*....|....*....|....
gi 117928403  79 SARDQEAQKvKALDAGADDYVTKP 102
PRK11091     607 TANVLKDKQ-EYLDAGMDDVLSKP 629

-1

138914

PRK12370

invasion protein regulator; Provisional

false

true

false

553

5e-07

49.47

18.63

5,131,17,6,138,23,58,197,81,11,209,92,15,225,107,13

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403 132 DFTIDLaDKTVRRGDEPIRLTPTEWHILDILARHAGRLVTTRQLLHDVWGPTYRNETHYLRVYMAqLRRKLEPDPAHpRY 211
PRK12370      18 DFILNM-DGSLLRSEKKVNIPPKEYAVLVILLEAAGEIVSKNTLLDQVWGDAEVNEESLTRCIYA-LRRILSEDKEH-RY 94

                         90       100
                 ....*....|....*....|....*..
gi 117928403 212 LRTEPGIGYRLVVePTPAVDPSTPPSS 238
PRK12370      95 IETLYGQGYRFNR-PVVVVSPPAPQPT 120

-1

138717

PRK11697

putative two-component response-regulatory protein YehT; Provisional

false

true

false

239

1e-06

48.34

42.68

6,0,0,25,25,26,4,29,31,40,70,71,4,74,76,11,87,87,15

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403   1 MASVLVVDDEPAIVRALRINLTARG-YEVY-TAFDGRTALQLVTAHKPDLMILDLGLPDMDGIDVIGGVRGwSTMP-ILV 77
PRK11697       1 MIKVLIVDDEPLAREELRELLQEEGdIEIVgECSNAIEALGAIHRLKPDVVFLDIQMPRISGLELVGMLDP-EHMPyIVF 79

                         90       100
                 ....*....|....*....|....*
gi 117928403  78 LSARDQEAqkVKALDAGADDYVTKP 102
PRK11697      80 VTAFDEYA--IKAFEEHAFDYLLKP 102

-1

137324

PRK09483

response regulator; Provisional

false

true

false

216

4e-06

46.64

50.93

5,0,0,10,11,10,5,16,17,13,29,31,38,67,70,40

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403   1 MASVLVVDDEpAIVRA--LRINLTARGYEVY-TAFDGRTALQLVTAHKPDLMILDLGLPDMDGIDVIGGV-RGWSTMPIL 76
PRK09483       1 MINVLLVDDH-ELVRAgiRRILEDIKGIKVVgEASCGEDAVKWCRTNAVDVVLMDMNMPGIGGLEATRKIlRSTPDVKII 79

                         90       100       110
                 ....*....|....*....|....*....|.
gi 117928403  77 VLSARDQEAQKVKALDAGADDYVTKPFGMDE 107
PRK09483      80 MLTVHTENPLPAKVMQAGAAGYLSKGAAPQE 110

-1

137400

PRK09581

pleD

response regulator PleD; Reviewed

false

true

false

457

6e-06

46.07

22.54

5,1,155,10,13,165,7,20,174,4,25,178,44,69,225,33

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403   2 ASVLVVDDEPaiVRALRIN--LTARgYEVYTAFDGRTALQLVTAHKPDLMILDLGLPDMDGIDVIGGVRG---WSTMPIL 76
PRK09581     156 GRILLVDDDV--SQAERIAniLKEE-FRVDVLSDPEEALIRAAEGNYDLIIVSASFENYDPLRLCSQLRSkerTRYVPIL 232

                         90       100
                 ....*....|....*....|....*.
gi 117928403  77 VLSARDQEAQKVKALDAGADDYVTKP 102
PRK09581     233 LLVDEDEDPRLVKALELGVNDYLMRP 258

-1

137598

PRK09935

transcriptional regulator FimZ; Provisional

false

true

false

210

7e-06

46.04

49.05

4,1,3,18,20,21,12,32,36,37,69,74,32

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403   2 ASVLVVDDEPAIVRALRInLTARGYEVYTAF---DGRTALQLVTAHKPDLMILDLGLPDMDGIDVIGGVRG-WSTMPILV 77
PRK09935       4 ASVIIMDEHPIVRMSIEV-LLQKNSNIQVVLktdDSRITIDYLRTYPVDLVILDIELPGTDGFTLLKRIKQiQETVKVLF 82

                         90       100
                 ....*....|....*....|....
gi 117928403  78 LSARDQEAQKVKALDAGADDYVTK 101
PRK09935      83 LSSKSECFYAGRAIRAGANGFVSK 106

-1

139897

PRK13837

two-component VirA-like sensor kinase; Provisional

false

true

false

831

0.001

38.90

12.39

5,1,699,27,28,728,29,58,757,9,67,767,8,76,775,27

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403   2 ASVLVVDDEPAIVRALRINLTARGYEV--YTAFDGRTALQLVTAHKPDLMILDLGLPDmDGIDVIGGV-RGWSTMPIlVL 78
PRK13837     700 ETVLLVEPDDALLERYEEKLAALGYEPvgFSTLSAAIAWISKDGKRFDLVLVDQPSLG-DSQLAIAALhAAAPTLPI-IL 777

                         90       100
                 ....*....|....*....|....*
gi 117928403  79 SARDQEAQKVKALDAGADDYVTKPF 103
PRK13837     778 AGSSLKMAAREALATAIAEILPKPI 802

-1

139663

PRK13557

histidine kinase; Provisional

false

true

false

538

0.004

36.63

11.15

3,3,415,41,44,457,12,56,470,5

                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403   4 VLVVDDEPAIVRALRINLTARGYEVYTAFDGRTALQLVTAH-KPDLMILDLGLP-DMDGI 61
PRK13557     416 ILIVDDRPDVAELARMILEDFGYRTLVASNGREALEILESHpEVDLLFTDLIMPgGMNGV 475

-1

136271

PRK07239

bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated

false

true

false

381

0.005

36.15

22.05

3,141,297,38,181,335,23,208,358,23

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928403 142 VRRGDEPIRLTPTEWHILDILARHAGRLVTTRQLLHDVwgPTYRNETHYLRVYMAQLRRKLEPdpahPRYLRTEPGIGYR 221
PRK07239     298 VLVDGEVKPLSPAPMALLRALAARPGRVVSRADLLRAL--PGGGTDEHAVETAVARLRTALGD----PKLVQTVVKRGYR 371

                         90
                 ....*....|
gi 117928403 222 LVVEPTPAVD 231
PRK07239     372 LAVDPRDDSA 381

-1

active site	0	8	8	true	29071	cd00156	REC
phosphorylation site	1	1	1	true	29071	cd00156	REC
intermolecular recognition site	2	5	5	true	29071	cd00156	REC
dimerization interface	3	3	3	true	29071	cd00156	REC
DNA binding site	0	9	9	true	29475	cd00383	trans_reg_C