NCBI Conserved Domain Search

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Conserved domains on [gi\|117927835\|ref\|YP_872386.1\|]
response regulator receiver protein [Acidothermus cellulolyticus 11B]

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List of domain hits		?

References:

Marchler-Bauer A et al. (2009), "CDD: specific functional annotation with the Conserved Domain Database.", Nucleic Acids Res.37(D)205-10.

Marchler-Bauer A, Bryant SH (2004), "CD-Search: protein domain annotations on the fly.", Nucleic Acids Res.32(W)327-331.

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of the residues that compose this conserved feature have been mapped to the query sequence.

Click on the triangle to view details about the feature, including a multiple sequence alignment of your query sequence and the protein sequences used to curate the domain model, where hash marks (#) above the aligned sequences show the location of the conserved feature residues.

The thumbnail image, if present, provides an approximate view of the feature's location in 3 dimensions. Click on the triangle for interactive 3D structure viewing options.

This image shows a graphical summary of conserved domains identified on the query sequence. The Show Concise/Full Display button at the top of the page can be used to select the desired level of detail: only top scoring hits (labeled illustration) or all hits (labeled illustration).
Domains are color coded according to superfamilies to which they have been assigned. Hits with scores that pass a domain-specific threshold (specific hits) are drawn in bright colors. Others (non-specific hits) and superfamily placeholders are drawn in pastel colors.
if a domain or superfamily has been annotated with functional sites (conserved features), they are mapped to the query sequence and indicated through sets of triangles with the same color and shade of the domain or superfamily that provides the annotation.
Mouse over the colored bars or triangles to see descriptions of the domains and features. click on the bars or triangles to view your query sequence embedded in a multiple sequence alignment of the proteins used to develop the corresponding domain model.

The table lists conserved domains identified on the query sequence. Click on the plus sign (+) on the left to display full descriptions, alignments, and scores. Click on the PssmId to view the multiple sequence alignment of the proteins used to develop the corresponding domain model.

To view your query sequence embedded in that multiple sequence alignment, click on the colored bars in the Graphical Summary portion of the search results page, or click on the triangles, if present, that represent functional sites (conserved features) mapped to the query sequence.

Concise Display shows only the best scoring domain model, in each hit category listed below except non-specific hits, for each region on the query sequence. (labeled illustration)
Full Display shows all domain models, in each hit category below, that meet or exceed the RPS-BLAST threshold for statistical significance. (labeled illustration)
Four types of hits can be shown, as available, for each region on the query sequence:

specific hits meet or exceed a domain-specific e-value threshold (illustrated example) and represent a very high confidence that the query sequence belongs to the same protein family as the sequences use to create the domain model
non-specific hits meet or exceed the RPS-BLAST threshold for statistical significance (default E-value cutoff of 0.01, or an E-value selected by user via the advanced search options)
the domain superfamily to which the specific and non-specific hits belong
multi-domain models that were computationally detected and are likely to contain multiple single domains

The CD-Search help document provides more detail about the tool and its features.

Retrieve proteins that contain one or more of the domains present in the query sequence, using the Conserved Domain Architecture Retrieval Tool (CDART).

Modify your query to search against a different database and/or use advanced search options

29071

cd00156

REC

Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers

Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC,...

true

false

true

113

1e-22

101.09

96.46

2,0,0,66,68,66,43

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927835   1 MIVDDDEAIRRLMRVNLELEGFQVDEAPDGERCLAAIHQLRPDLVVLDVAMPGIDGLSVARTLRADpaVAEVKILMVSAL 80
cd00156        1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAEEKPDLILLDIMMPGMDGLELLRRIRKR--GPDIPIIFLTAH 78

                         90       100       110
                 ....*....|....*....|....*....|.
gi 117927835  81 ARSEDVERGRLAGADAYLTKPFEPDAFVQLI 111
cd00156       79 GDDEDAVEALKAGADDYLTKPFSPEELLARI 109

cl09944

142340

REC

Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC,...

109140

pfam00072

Response_reg

Response regulator receiver domain

false

111

3e-22

99.19

98.20

2,0,1,67,69,68,42

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927835   1 MIVDDDEAIRRLMRVNLELEGFQVDEAPDGERCLAAIHQLRPDLVVLDVAMPGIDGLSVARTLRADPavAEVKILMVSAL 80
pfam00072      2 LIVDDDPLIRELLRQLLEKEGYVVAEADDGEEALELLKEKRPDLILLDIRMPGMDGLELLRRIRRRP--PTTPVIVLTAH 79

                         90       100       110
                 ....*....|....*....|....*....|.
gi 117927835  81 ARSEDVERGRLAGADAYLTKPFEPDAFVQLI 111
pfam00072     80 GDEEDAVEALKAGANDFLSKPFDPEELVAAL 110

cl09944

142340

REC

Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC,...

-1

138024

PRK10610

chemotaxis regulatory protein CheY; Provisional

false

129

4e-15

75.44

79.84

2,0,8,23,23,32,79

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927835   1 MIVDDDEAIRRLMRVNLELEGFQ-VDEAPDGERCLAAIHQLRPDLVVLDVAMPGIDGLSVARTLRADPAVAEVKILMVSA 79
PRK10610       9 LVVDDFSTMRRIVRNLLKELGFNnVEEAEDGVDALNKLQAGGFGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTA 88

                         90       100
                 ....*....|....*....|...
gi 117927835  80 LARSEDVERGRLAGADAYLTKPF 102
PRK10610      89 EAKKENIIAAAQAGASGYVVKPF 111

cl09944

142340

REC

Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC,...

-1

31127

COG0784

CheY

FOG: CheY-like receiver [Signal transduction mechanisms]

false

130

4e-14

72.57

83.08

3,0,8,37,37,47,31,70,78,38

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927835   1 MIVDDDEAIRRLMRVNLELEGFQVDEAPDGERCLAAI--HQLRPDLVVLDVAMPGIDGLSVARTLRADPAvaEVKILMVS 78
COG0784        9 LVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELlrELPQPDLILLDINMPGMDGIELLRRLRARGP--NIPVILLT 86

                         90       100       110
                 ....*....|....*....|....*....|
gi 117927835  79 ALARSEDVERGRLAGADAYLTKPFEPDAFV 108
COG0784       87 AYADEADRERALAAGADDYLTKPIFLEEEL 116

cl09944

142340

REC

Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC,...

-1

128724

smart00448

REC

cheY-homologous receiver domain

false

2e-10

60.29

94.55

1,0,3,52

                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 117927835   1 MIVDDDEAIRRLMRVNLELEGFQVDEAPDGERCLAAIHQLRPDLVVLDVAMP 52
smart00448     4 LVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKEEKPDLILLDIMMP 55

cl09944

142340

REC

Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC,...

-1

131209

TIGR02154

PhoB

phosphate regulon transcriptional regulatory protein PhoB

false

true

false

226

2e-21

97.01

46.02

1,0,5,104

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927835   1 MIVDDDEAIRRLMRVNLELEGFQVDEAPDGERCLAAIHQLRPDLVVLDVAMPGIDGLSVARTLRADPAVAEVKILMVSAL 80
TIGR02154      6 LVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINERGPDLILLDWMLPGTSGIELCRRLRRRPETRAIPIIMLTAR 85

                         90       100
                 ....*....|....*....|....
gi 117927835  81 ARSEDVERGRLAGADAYLTKPFEP 104
TIGR02154     86 GEEEDRVRGLETGADDYITKPFSP 109

-1

133606

CHL00148

orf27

Ycf27; Reviewed

false

true

false

240

1e-20

93.95

42.50

2,0,9,66,69,75,36

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927835   1 MIVDDDEAIRRLMRVNLELEGFQVDEAPDGERCLAAIHQLRPDLVVLDVAMPGIDGLSVARTLRADpavAEVKILMVSAL 80
CHL00148      10 LVVDDEASIRRILETRLSIIGYEVITASDGEEALKLFHQEQPDLVILDVMMPKLDGYGVCQEIRKE---SDVPIIMLTAL 86

                         90       100
                 ....*....|....*....|....*
gi 117927835  81 ARSEDVERGRLAGADAYLTKPFEPD 105
CHL00148      87 GDVSDRITGLELGADDYVVKPFSPK 111

-1

31088

COG0745

OmpR

Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]

Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-...

false

true

false

229

2e-19

89.62

46.29

3,0,3,39,40,42,26,67,68,41

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927835   1 MIVDDDEAIRRLMRVNLELEGFQVDEAPDGERCLAAIHQlRPDLVVLDVAMPGIDGLSVARTLRADpAVAEVKILMVSAL 80
COG0745        4 LLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAARE-QPDLVLLDLMLPDLDGLELCRRLRAK-KGSGPPIIVLTAR 81

                         90       100
                 ....*....|....*....|....*...
gi 117927835  81 ARSEDVERGRLAGADAYLTKPFEPDAFV 108
COG0745       82 DDEEDRVLGLEAGADDYLTKPFSPRELL 109

-1

137400

PRK09581

pleD

response regulator PleD; Reviewed

false

true

false

457

5e-18

85.36

22.10

1,0,5,101

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927835   1 MIVDDDEAIRRLMRVNLELEGFQVDEAPDGERCLAAIHQLRPDLVVLDVAMPGIDGLSVARTLRADPAVAEVKILMVSAL 80
PRK09581       6 LVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIEICEREQPDIILLDVMMPGMDGFEVCRRLKSDPATAHIPVVMVTAL 85

                         90       100
                 ....*....|....*....|.
gi 117927835  81 ARSEDVERGRLAGADAYLTKP 101
PRK09581      86 DDPSDRVRGLEAGADDFLTKP 106

-1

33501

COG3706

PleD

Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]

Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal...

false

true

false

435

1e-16

80.73

25.06

1,0,135,109

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927835   1 MIVDDDEAIRRLMRVNLELEGFQVDEAPDGERCLAAIHQLRPDLVVLDVAMPGIDGLSVARTLRADPAVAEVKILMVSAL 80
COG3706      136 LVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAELPPDLVLLDANMPDMDGLELCTRLRQLERTRDIPIILLSSK 215

                         90       100
                 ....*....|....*....|....*....
gi 117927835  81 ARSEDVERGRLAGADAYLTKPFEPDAFVQ 109
COG3706      216 DDDELVVRAFELGVNDYITKPIEEGELRA 244

-1

137310

PRK09468

ompR

osmolarity response regulator; Provisional

false

true

false

239

3e-16

79.65

43.10

4,0,8,65,67,73,11,80,84,8,88,94,17

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927835   1 MIVDDDEAIRRLMRVNLELEGFQVDEAPDGERCLAAIHQLRPDLVVLDVAMPGIDGLSVARTLRAdpAVAEVKILMVSal 80
PRK09468       9 LVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTRESFHLMVLDLMLPGEDGLSICRRLRS--QNNPTPIIMLT-- 84

                         90       100
                 ....*....|....*....|....*..
gi 117927835  81 ARSEDVER--GRLAGADAYLTKPFEPD 105
PRK09468      85 AKGEEVDRivGLEMGADDYLPKPFNPR 111

-1

32386

COG2204

AtoC

Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]

Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding...

false

true

false

464

1e-15

77.64

23.28

2,1,8,64,67,72,44

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927835   2 IVDDDEAIRRLMRVNLELEGFQVDEAPDGERCLAAIHQLRPDLVVLDVAMPGIDGLSVARTLRAdpAVAEVKILMVSALA 81
COG2204        9 VVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSESPFDLVLLDIRMPGMDGLELLKEIKS--RDPDLPVIVMTGHG 86

                         90       100       110
                 ....*....|....*....|....*....|
gi 117927835  82 RSEDVERGRLAGADAYLTKPFEPDAFVQLI 111
COG2204       87 DIDTAVEALRLGAFDFLEKPFDLDRLLAIV 116

-1

33243

COG3437

Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]

Response regulator containing a CheY-like receiver domain and an HD-GYP domain [...

false

true

false

360

2e-14

73.41

30.28

2,0,17,65,65,83,43

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927835   1 MIVDDDEAIRRLMRVNLELEGFQVDEAPDGERCLAAIHQLRPDLVVLDVAMPGIDGLSVARTLRA-DPAVAEVKILMVSA 79
COG3437       18 LLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQEEPPDLVLLDVRMPEMDGAEVLNKLKAmSPSTRRIPVILLTA 97

                         90       100
                 ....*....|....*....|....*....
gi 117927835  80 LARSEDVERGRLAGADAYLTKPFEPDAFV 108
COG3437       98 YADSEDRQRALEAGADDYLSKPISPKELV 126

-1

104359

PRK10161

transcriptional regulator PhoB; Provisional

false

true

false

229

3e-14

72.83

60.70

1,0,5,139

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927835   1 MIVDDDEAIRRLMRVNLELEGFQVDEAPDGERCLAAIHQLRPDLVVLDVAMPGIDGLSVARTLRADPAVAEVKILMVSAL 80
PRK10161       6 LVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTAR 85

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 117927835  81 ARSEDVERGRLAGADAYLTKPFEPDAFVQLIRTLLAADRPADDATDPERHTDATDPGRH 139
PRK10161      86 GEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRISPMAVEEVIEMQGLSLDPTSH 144

-1

138153

PRK10766

DNA-binding transcriptional regulator TorR; Provisional

false

true

false

224

4e-14

72.38

45.09

4,0,5,66,69,71,9,80,80,8,88,90,16

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927835   1 MIVDDDEAIRRLMRVNLELEGFQVDEAPDGERCLAAIHQLRPDLVVLDVAMPGIDGLSVARTLRADpavAEVKILMVSal 80
PRK10766       6 LVVEDEPVTRARLQGYFEQEGYRVSEAASGAGMREIMQNQHVDLILLDINLPGEDGLMLTRELRSR---STVGIILVT-- 80

                         90       100
                 ....*....|....*....|....*.
gi 117927835  81 ARSEDVER--GRLAGADAYLTKPFEP 104
PRK10766      81 GRTDSIDRivGLEMGADDYVTKPFEL 106

-1

34367

COG4753

Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]

Response regulator containing CheY-like receiver domain and AraC-type DNA-binding...

false

true

false

475

8e-14

71.50

22.32

4,0,4,14,14,20,9,23,30,43,68,73,37

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927835   1 MIVDDDEAIRRLMR--VNLELEGFQ-VDEAPDGERCLAAIHQLRPDLVVLDVAMPGIDGLSVARTLRADpaVAEVKILMV 77
COG4753        5 LIVDDEPLIREGLKslIDWEALGIEvVGTAANGKEALELIQETQPDIVITDINMPGMDGLDLIKAIKEQ--SPDTEFIIL 82

                         90       100
                 ....*....|....*....|....*...
gi 117927835  78 SALARSEDVERGRLAGADAYLTKPFEPD 105
COG4753       83 SGYDEFEYAKKAMKLGVKDYLLKPVDKA 110

-1

138391

PRK11083

DNA-binding response regulator CreB; Provisional

false

true

false

229

2e-13

70.40

44.10

4,1,7,64,67,71,11,80,82,8,88,92,16

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927835   2 IVDDDEAIRRLMRVNLELEGFQVDEAPDGERCLAAIHQLRPDLVVLDVAMPGIDGLSVARTLRAdpAVAEVKILMVSalA 81
PRK11083       8 LVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQQPPDLVILDVGLPDISGFELCRQLRA--FHPALPVIFLT--A 83

                         90       100
                 ....*....|....*....|....*
gi 117927835  82 RSEDVER--GRLAGADAYLTKPFEP 104
PRK11083      84 RSDEVDRlvGLEIGADDYVAKPFSP 108

-1

137960

PRK10529

DNA-binding transcriptional activator KdpE; Provisional

false

true

false

225

2e-13

70.26

44.00

2,0,4,70,73,74,29

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927835   1 MIVDDDEAIRRLMRVNLELEGFQVDEAPDGERCLAAIHQLRPDLVVLDVAMPGIDGLSVARTLRADPAVAevkILMVSAL 80
PRK10529       5 LIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQWSAIP---VIVLSAR 81

                         90       100
                 ....*....|....*....|..
gi 117927835  81 ARSEDVERGRLAGADAYLTKPF 102
PRK10529      82 SEESDKIAALDAGADDYLSKPF 103

-1

138104

PRK10710

DNA-binding transcriptional regulator BaeR; Provisional

false

true

false

240

4e-13

69.00

43.75

4,0,13,64,67,77,11,80,88,8,88,98,20

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927835   1 MIVDDDEAIRRLMRVNLELEGFQVDEAPDGERCLAAIHQLRPDLVVLDVAMPGIDGLSVARTLRadpAVAEVKILMVSal 80
PRK10710      14 LIVEDEPKLGQLLIDYLRAASYAPTLISHGDEVLPYVRQTPPDLILLDLMLPGTDGLTLCREIR---RFSDIPIVMVT-- 88

                         90       100       110
                 ....*....|....*....|....*....|
gi 117927835  81 ARSEDVER--GRLAGADAYLTKPFEPDAFV 108
PRK10710      89 AKIEEIDRllGLEIGADDYICKPYSPREVV 118

-1

32379

COG2197

CitB

Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]

Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain...

false

true

false

211

6e-13

68.44

52.61

4,0,3,21,21,25,3,24,29,42,68,71,43

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927835   1 MIVDDDEAIRRLMRVNLELEG-FQV-DEAPDGERCLAAIHQLRPDLVVLDVAMPGIDGLSVARTLRADpaVAEVKILMVS 78
COG2197        4 LIVDDHPLVREGLRQLLELEPdLEVvGEASNGEEALDLARELKPDVVLLDLSMPGMDGLEALKQLRAR--GPDIKVVVLT 81

                         90       100       110
                 ....*....|....*....|....*....|...
gi 117927835  79 ALARSEDVERGRLAGADAYLTKPFEPDAFVQLI 111
COG2197       82 AHDDPAYVIRALRAGADGYLLKDASPEELVEAI 114

-1

138540

PRK11361

acetoacetate metabolism regulatory protein AtoC; Provisional

false

true

false

457

1e-12

67.56

23.85

3,0,7,65,65,73,5,73,78,38

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927835   1 MIVDDDEAIRRLMRVNLELEGFQVDEAPDGERCLAAIHQLRPDLVVLDVAMPGIDGLSVARTLRA-DPAVAevkILMVSA 79
PRK11361       8 LIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIKALKEMRShETRTP---VILMTA 84

                         90       100       110
                 ....*....|....*....|....*....|..
gi 117927835  80 LARSEDVERGRLAGADAYLTKPFEPDAFVQLI 111
PRK11361      85 YAEVETAVEALRCGAFDYVIKPFDLDELNLIV 116

-1

138058

PRK10651

transcriptional regulator NarL; Provisional

false

true

false

216

3e-12

65.85

51.39

4,0,9,20,20,30,3,23,34,42,67,76,44

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927835   1 MIVDDDEAIRRLMRVNLELE-GFQ-VDEAPDGERCLAAIHQLRPDLVVLDVAMPGIDGLSVARTLRAdpAVAEVKILMVS 78
PRK10651      10 LLIDDHPMLRTGVKQLISMApDITvVGEASNGEQGIELAESLDPDLILLDLNMPGMNGLETLDKLRE--KSLSGRIVVFS 87

                         90       100       110
                 ....*....|....*....|....*....|...
gi 117927835  79 ALARSEDVERGRLAGADAYLTKPFEPDAFVQLI 111
PRK10651      88 VSNHEEDVVTALKRGADGYLLKDMEPEDLLKAL 120

-1

131922

TIGR02875

spore_0_A

sporulation transcription factor Spo0A

false

true

false

262

1e-11

64.04

42.75

2,1,6,13,14,21,97

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927835   2 IVDDDEAIRRLMR--VNLELEGFQVDEAPDGERCLAAIHQLRPDLVVLDVAMPGIDGLSVARTLRADPAVAEVKILMVSA 79
TIGR02875      7 IADDNKEFCNLLKeyLAAQPDMEVVGVAHNGVDALELIKEQQPDVVVLDIIMPHLDGIGVLEKLNEIELSARPRVIMLSA 86

                         90       100       110
                 ....*....|....*....|....*....|..
gi 117927835  80 LARSEDVERGRLAGADAYLTKPFEPDAFVQLI 111
TIGR02875     87 FGQEKITQRAVALGADYYVLKPFDLEILAARI 118

-1

130454

TIGR01387

cztR_silR_copR

heavy metal response regulator

false

true

false

218

2e-11

63.66

46.33

2,0,1,67,69,68,34

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927835   1 MIVDDDEAIRRLMRVNLELEGFQVDEAPDGERCLAAIHQLRPDLVVLDVAMPGIDGLSVARTLRADPavAEVKILMVSAL 80
TIGR01387      2 LVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLALKDDYDLIILDVMLPGMDGWQILQTLRRSG--KQTPVLFLTAR 79

                         90       100
                 ....*....|....*....|...
gi 117927835  81 ARSEDVERGRLAGADAYLTKPFE 103
TIGR01387     80 DSVADKVKGLDLGADDYLVKPFS 102

-1

137869

PRK10403

transcriptional regulator NarP; Provisional

false

true

false

215

2e-11

63.34

51.63

4,0,9,20,20,30,4,24,35,57,83,92,28

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927835   1 MIVDDDEAIRRLMRVNLELE-GFQV-DEAPDGERCLAAIHQLRPDLVVLDVAMPGIDGLSVARTLRADPAVAEVKILMVS 78
PRK10403      10 LIVDDHPLMRRGVRQLLELDpGFEVvAEAGDGASAIDLANRLDIDVILLDLNMKGMSGLDTLNALRRDGVTAQIIILTVS 89

                         90       100       110
                 ....*....|....*....|....*....|...
gi 117927835  79 ALArsEDVERGRLAGADAYLTKPFEPDAFVQLI 111
PRK10403      90 DAS--SDIFALIDAGADGYLLKDSDPEVLLEAI 120

-1

138454

PRK11173

two-component response regulator; Provisional

false

true

false

237

3e-11

63.16

42.62

4,0,6,70,74,76,5,80,81,8,88,91,16

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927835   1 MIVDDDEAIRRLMRVNLELEGFQVDEAPDGERCLAAIHQLRPDLVVLDVAMPGIDGLSVARTLRADPAVAevkiLMVSAl 80
PRK11173       7 LIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSENDINLVIMDINLPGKNGLLLARELREQANVA----LMFLT- 81

                         90       100
                 ....*....|....*....|....*.
gi 117927835  81 ARSEDVER--GRLAGADAYLTKPFEP 104
PRK11173      82 GRDNEVDKilGLEIGADDYITKPFNP 107

-1

134369

PRK00742

chemotaxis-specific methylesterase; Provisional

false

true

false

345

3e-11

62.88

31.01

6,0,5,20,20,26,4,24,31,34,58,66,9,71,75,11,82,88,24

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927835   1 MIVDDDEAIRRLMRVNLELE-GFQV-DEAPDGERCLAAIHQLRPDLVVLDVAMPGIDGLS-VARTLRADPavaeVKILMV 77
PRK00742       6 LVVDDSAFMRRLLSEILNSDpDIEVvGTARDGLEAVEKIKKLNPDVITLDVEMPVMDGIEaLRKIMALRP----TPVVMV 81

                         90       100       110
                 ....*....|....*....|....*....|.
gi 117927835  78 SALAR--SEDVERGRLAGADAYLTKPFEPDA 106
PRK00742      82 SSLTErgAEITLEALELGAVDFVPKPFLGIS 112

-1

137612

PRK09959

hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional

false

true

false

1197

6e-11

61.67

8.77

2,0,961,67,69,1028,38

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927835    1 MIVDDDEAIRRLMRVNLELEGFQVDEAPDGERCLAAIHQLRPDLVVLDVAMPGIDGLSVARTLRADPavAEVKILMVSAL 80
PRK09959      962 LIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFELTRKLREQN--SSLPIWGLTAN 1039

                          90       100
                  ....*....|....*....|....*..
gi 117927835   81 ARSEDVERGRLAGADAYLTKPFEPDAF 107
PRK09959     1040 AQANEREKGLNCGMNLCLFKPLTLDVL 1066

-1

138305

PRK10955

DNA-binding transcriptional regulator CpxR; Provisional

false

true

false

232

3e-10

59.46

46.12

3,0,4,39,40,43,26,69,69,42

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927835   1 MIVDDDEAIRRLMRVNLELEGFQVDEAPDGERCLAAIHQlRPDLVVLDVAMPGIDGLSVARTLRADpavAEVKILMVSAL 80
PRK10955       5 LLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGIDTLKALRQT---HQTPVIMLTAR 80

                         90       100       110
                 ....*....|....*....|....*....|.
gi 117927835  81 ARSEDVERGRLAGADAYLTKPFEPDAFVQLI 111
PRK10955      81 GSELDRVLGLELGADDYLPKPFNDRELVARI 111

-1

132001

TIGR02956

TMAO_torS

TMAO reductase sytem sensor TorS

false

true

false

968

8e-10

58.25

11.57

2,0,705,65,65,771,46

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927835   1 MIVDDDEAIRRLMRVNLELEGFQVDEAPDGERCLAAIHQLRPDLVVLDVAMPGIDGLSVARTLRA-DPAVAEVKILMVSA 79
TIGR02956    706 LLVEDNEVNQMVAQGFLTRLGHKVTLAESGQSALECFHQHAFDLALLDINLPDGDGVTLLQQLRAiYGAKNEVKFIAFSA 785

                         90       100       110
                 ....*....|....*....|....*....|..
gi 117927835  80 LARSEDVERGRLAGADAYLTKPFEPDAFVQLI 111
TIGR02956    786 HVFNEDVAQYLAAGFDGFLAKPVVEEQLTAMI 817

-1

33501

COG3706

PleD

Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]

Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal...

false

true

false

435

1e-09

57.62

20.23

2,9,0,61,74,61,27

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927835  10 RRLMRVNLELEGFQVDEAPDGERCLAAIHQLRPDLVVLDVAMPGIDGLSVARTLRADPAVAevkiLMVSALARSEDVERG 89
COG3706        1 VKLLEAKLPLEYKEVATAKKGLIALAILLDHKPDYKLLDVMMPGMDGFELCRRLKAEPATV----VMVTALDDSAPRVRG 76

                         90
                 ....*....|..
gi 117927835  90 RLAGADAYLTKP 101
COG3706       77 LKAGADDFLTKP 88

-1

138409

PRK11107

hybrid sensory histidine kinase BarA; Provisional

false

true

false

920

2e-09

57.21

12.07

3,0,671,84,86,755,5,91,762,20

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927835   1 MIVDDDEAIRRLMRVNLELEGFQVDEAPDGERCLAAIHQLRPDLVVLDVAMPGIDGLSVARTLRADPAVAEVKILMVSAL 80
PRK11107     672 MAVDDNPANLKLIGALLEEQVEHVVLCDSGHQAVELAKQRPFDLIFMDIQMPGMDGIRACELIRQLPHNQNTPIIAVTAH 751

                         90       100       110
                 ....*....|....*....|....*....|...
gi 117927835  81 ARSEdvERGRL--AGADAYLTKPFEPDAFVQLI 111
PRK11107     752 AMAG--ERERLlgAGMDDYLAKPIDEAALKQVL 782

-1

137324

PRK09483

response regulator; Provisional

false

true

false

216

3e-09

56.27

51.39

5,0,4,18,18,23,6,24,30,38,62,69,5,70,74,41

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927835   1 MIVDDDEAIRRLMRVNLE-LEGFQV-DEAPDGERCLAAIHQLRPDLVVLDVAMPGIDGLSVART-LRADPavaEVKILMV 77
PRK09483       5 LLVDDHELVRAGIRRILEdIKGIKVvGEASCGEDAVKWCRTNAVDVVLMDMNMPGIGGLEATRKiLRSTP---DVKIIML 81

                         90       100       110
                 ....*....|....*....|....*....|....
gi 117927835  78 SALARSEDVERGRLAGADAYLTKPFEPDAFVQLI 111
PRK09483      82 TVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAI 115

-1

34203

COG4565

CitB

Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]

Response regulator of citrate/malate metabolism [Transcription / Signal transduction...

false

true

false

224

4e-09

55.60

48.66

4,0,3,18,18,22,5,23,28,44,69,72,40

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927835   1 MIVDDDEAIRRLMRVNLE-LEGFQ-VDEAPDGERCLAAIHQLRPDLVVLDVAMPGIDGLSVARTLRADPavAEVKILMVS 78
COG4565        4 LIIEDDPMVAEIHRRYVKqIPGFSvVGTAGTLEEAKMIIEEFKPDLILLDIYMPDGNGIELLPELRSQH--YPVDVIVIT 81

                         90       100       110
                 ....*....|....*....|....*....|.
gi 117927835  79 ALARSEDVERGRLAGADAYLTKPFEPDAFVQ 109
COG4565       82 AASDMETIKEALRYGVVDYLIKPFTFERLQQ 112

-1

138195

PRK10816

DNA-binding transcriptional regulator PhoP; Provisional

false

true

false

223

6e-09

55.21

44.84

2,0,3,67,69,70,33

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927835   1 MIVDDDEAIRRLMRVNLELEGFQVDEAPDGERCLAAIHQLRPDLVVLDVAMPGIDGLSVARTLRADPavAEVKILMVSAL 80
PRK10816       4 LVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNEHLPDIAIVDLGLPDEDGLSLIRRWRSND--VSLPILVLTAR 81

                         90       100
                 ....*....|....*....|..
gi 117927835  81 ARSEDVERGRLAGADAYLTKPF 102
PRK10816      82 ESWQDKVEVLSAGADDYVTKPF 103

-1

33728

COG3947

Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Response regulator containing CheY-like receiver and SARP domains [Signal transduction...

false

true

false

361

9e-09

54.59

29.64

3,0,3,65,67,68,22,91,90,20

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927835   1 MIVDDDEAIRRLMRVNLELEGFQVDEAPDGERCLAAIHQLRPDLVVLDVAMPGIDGLSVARTLRAdpAVAEVKILMVSAL 80
COG3947        4 IIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEVFKPDLIFLDIVMPYMNGIEFAEQVRD--IESAVPIIFISSH 81

                         90       100       110
                 ....*....|....*....|....*....|.
gi 117927835  81 ARSEDVERGrlAGADAYLTKPFEPDAFVQLI 111
COG3947       82 AEYADDSFG--MNLDDYLPKPVTPEKLNRAI 110

-1

137827

PRK10336

DNA-binding transcriptional regulator QseB; Provisional

false

true

false

219

2e-08

53.40

45.66

3,0,3,64,65,67,26,92,93,10

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927835   1 MIVDDDEAIRRLMRVNLELEGFQVDEAPDGERCLAAIHQLRPDLVVLDVAMPGIDGLSVARTLRaDPAVAEVKILMVSAL 80
PRK10336       4 LLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILREWR-EKGQREPVLILTARD 82

                         90       100
                 ....*....|....*....|..
gi 117927835  81 ARSEDVERGRLaGADAYLTKPF 102
PRK10336      83 ALAERVEGLRL-GADDYLCKPF 103

-1

130877

TIGR01818

ntrC

nitrogen regulation protein NR(I)

false

true

false

463

3e-08

52.82

23.33

2,1,2,64,67,66,44

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927835   2 IVDDDEAIRRLMRVNLELEGFQVDEAPDGERCLAAIHQLRPDLVVLDVAMPGIDGLSVARTLRAdpAVAEVKILMVSALA 81
TIGR01818      3 VVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALARGQPDLLITDVRMPGEDGLDLLPQIKK--RHPQLPVIVMTAHS 80

                         90       100       110
                 ....*....|....*....|....*....|
gi 117927835  82 RSEDVERGRLAGADAYLTKPFEPDAFVQLI 111
TIGR01818     81 DLDTAVAAYQRGAFEYLPKPFDLDEAVTLV 110

-1

138611

PRK11517

transcriptional regulatory protein YedW; Provisional

false

true

false

223

3e-08

53.01

44.39

2,0,3,64,67,67,35

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927835   1 MIVDDDEAIRRLMRVNLELEGFQVDEAPDGERCLAAIHQLRPDLVVLDVAMPGIDGLSVARTLRadpAVAEVKILMVSAL 80
PRK11517       4 LLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQILQTLR---TAKQTPVICLTAR 80

                         90       100
                 ....*....|....*....|..
gi 117927835  81 ARSEDVERGRLAGADAYLTKPF 102
PRK11517      81 DSVDDRVRGLDSGANDYLVKPF 102

-1

32383

COG2201

CheB

Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]

Chemotaxis response regulator containing a CheY-like receiver domain and a...

false

true

false

350

3e-08

52.59

30.00

4,0,4,21,21,27,49,73,76,9,82,87,22

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927835   1 MIVDDDEAIRRLMRVNLELEG--FQVDEAPDGERCLAAIHQLRPDLVVLDVAMPGIDGLSVARTLRADPAVAevkILMVS 78
COG2201        5 LVVDDSALMRKVISDILNSDPdiEVVGTARNGREAIDKVKKLKPDVITLDVEMPVMDGLEALRKIMRLRPLP---VIMVS 81

                         90       100
                 ....*....|....*....|....*...
gi 117927835  79 ALAR--SEDVERGRLAGADAYLTKPFEP 104
COG2201       82 SLTEegAEATLEALELGAVDFIAKPSGG 109

-1

138282

PRK10923

glnG

nitrogen regulation protein NR(I); Provisional

false

true

false

469

5e-08

52.23

23.03

2,1,7,74,77,81,34

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927835   2 IVDDDEAIRRLMRVNLELEGFQVDEAPDGERCLAAIHQLRPDLVVLDVAMPGIDGLSVARTLRADPAVAEVKILmvSALA 81
PRK10923       8 VVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALASKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIM--TAHS 85

                         90       100       110
                 ....*....|....*....|....*....|
gi 117927835  82 RSEDVERGRLAGADAYLTKPFEPDAFVQLI 111
PRK10923      86 DLDAAVSAYQQGAFDYLPKPFDIDEAVALV 115

-1

137546

PRK09836

DNA-binding transcriptional activator CusR; Provisional

false

true

false

226

7e-08

51.94

46.90

3,0,3,65,67,68,35,105,103,6

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927835   1 MIVDDDEAIRRLMRVNLELEGFQVDEAPDGERCLAAIHQLRPDLVVLDVAMPGIDGLSVARTLRAdpAVAEVKILMVSAL 80
PRK09836       4 LIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDIVRMLRS--ANKGMPILLLTAL 81

                         90       100       110
                 ....*....|....*....|....*....|.
gi 117927835  81 ARSEDVERGRLAGADAYLTKPFepdAFVQLI 111
PRK09836      82 GTIEHRVKGLELGADDYLVKPF---AFAELL 109

-1

33090

COG3279

LytT

Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]

Response regulator of the LytR/AlgR family [Transcription / Signal transduction...

false

true

false

244

1e-07

51.12

44.67

4,0,4,14,14,20,50,64,71,24,93,95,18

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927835   1 MIVDDDEAIRRLMR--VNLELEGFQVDEAPDGERCLAAIHQLRPDLVVLDVAMPGIDGLSVARTLR-ADPAVAEVKILMV 77
COG3279        5 LIVDDEPLAREELRriLNEIPDIEIVGEAENGEEALQLLQGLRPDLVFLDIAMPDINGIELAARIRkGDPRPAIVFVTAH 84

                         90       100       110
                 ....*....|....*....|....*....|....
gi 117927835  78 SALARSEDVERgrlagADAYLTKPFEPDAFVQLI 111
COG3279       85 DEYAVAAFEVE-----ALDYLLKPISEERLAKTL 113

-1

34204

COG4566

TtrR

Response regulator [Signal transduction mechanisms]

false

true

false

202

1e-07

50.62

49.50

2,1,8,66,69,74,34

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927835   2 IVDDDEAIRRLMRVNLELEGFQVDEAPDGERCLAAIHQLRPDLVVLDVAMPGIDGLSVARTLRADPavAEVKILMVSALA 81
COG4566        9 VVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAPLDRPGCLLLDVRMPGMSGLELQDRLAERG--IRLPVIFLTGHG 86

                         90       100
                 ....*....|....*....|..
gi 117927835  82 RSEDVERGRLAGADAYLTKPFE 103
COG4566       87 DIPMAVQAMKAGAVDFLEKPFS 108

-1

138212

PRK10841

hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional

false

true

false

947

2e-07

50.04

10.45

2,0,827,72,74,899,27

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927835   1 MIVDDDEAIRRLMRVNLELEGFQVDEAPDGERCLAAIHQLRPDLVVLDVAMPGIDGLSVARTLRADPAVAEVkiLMVSAL 80
PRK10841     828 LVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPV--IGVTAN 905

                         90       100
                 ....*....|....*....|.
gi 117927835  81 ARSEDVERGRLAGADAYLTKP 101
PRK10841     906 ALAEEKQRCLEAGMDSCLSKP 926

-1

138091

PRK10693

response regulator of RpoS; Provisional

false

true

false

337

2e-07

50.08

29.38

2,0,10,67,69,77,32

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927835   1 MIVDDDEAIRRLMRVNLELEGFQVDEAPDGERCLAAIHQLRPDLVVLDVAMPGIDGLSVARTLRADPavAEVKILMVSAL 80
PRK10693      11 LIVEDEPVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKFVEHLRNRG--DQTPVLVISAT 88

                         90       100
                 ....*....|....*....|.
gi 117927835  81 ARSEDVERGRLAGADAYLTKP 101
PRK10693      89 ENMADIAKALRLGVEDVLLKP 109

-1

137244

PRK09390

fixJ

response regulator FixJ; Provisional

false

true

false

202

3e-07

49.64

53.47

5,1,7,71,73,78,5,78,87,3,85,90,10,96,100,15

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927835   2 IVDDDEAIRRLMRVNLELEGFQVDEAPDGERCLAAIHQLRPDLVVLDVAMPGIDGLSVARTLRADPAVAEVkILMVS--- 78
PRK09390       8 VVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPGLRFGCVVTDVRMPGIDGIELLRRLKARGSPLPV-IVMTGhgd 86

                         90       100       110
                 ....*....|....*....|....*....|....
gi 117927835  79 -ALArsedVERGRLAGADaYLTKPFEPDAFVQLI 111
PRK09390      87 vPLA----VEAMKLGAID-FIEKPFEDERLIGAI 115

-1

138051

PRK10643

DNA-binding transcriptional regulator BasR; Provisional

false

true

false

222

4e-07

49.32

45.05

4,0,3,25,25,31,14,42,45,33,77,78,25

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927835   1 MIVDDDEAIRRLMRVNLELEGFQVD---EAPDGERCLAAIHQlrpDLVVLDVAMPGIDGLSVARTLRADPAVAEVKILmv 77
PRK10643       4 LIVEDDTLLLQGLILAAQTEGYACDgvsTAREAEQSLESGHY---SLVVLDLGLPDEDGLHFLARIRQKKYTLPVLIL-- 78

                         90       100
                 ....*....|....*....|....*
gi 117927835  78 SALARSEDVERGRLAGADAYLTKPF 102
PRK10643      79 TARDTLEDRIAGLDVGADDYLVKPF 103

-1

34205

COG4567

Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]

Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [..

false

true

false

182

7e-07

48.42

56.59

2,0,12,65,67,77,38

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927835   1 MIVDDDEAIRRLMRVNLELEGFQVDEAPDGERCLAAIHQLRPDLVVLDVAMPGIDGLSVARTLRAdpAVAEVKILMVSAL 80
COG4567       13 LLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAARTAPPAYAVVDLKLGDGSGLAVIEALRE--RRADMRIVVLTGY 90

                         90       100
                 ....*....|....*....|....*
gi 117927835  81 ARSEDVERGRLAGADAYLTKPFEPD 105
COG4567       91 ASIATAVEAVKLGACDYLAKPADAD 115

-1

137850

PRK10365

transcriptional regulatory protein ZraR; Provisional

false

true

false

441

9e-07

48.10

24.72

3,0,8,65,65,74,5,73,79,38

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927835   1 MIVDDDEAIRRLMRVNLELEGFQVDEAPDGERCLAAIHQLRPDLVVLDVAMPGIDGLSVARTLRA-DPAVAevkILMVSA 79
PRK10365       9 LVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIATLKEIKAlNPAIP---VLIMTA 85

                         90       100       110
                 ....*....|....*....|....*....|..
gi 117927835  80 LARSEDVERGRLAGADAYLTKPFEPDAFVQLI 111
PRK10365      86 YSSVETAVEALKTGALDYLIKPLDFDNLQATL 117

-1

138717

PRK11697

putative two-component response-regulatory protein YehT; Provisional

false

true

false

239

1e-06

47.95

38.49

6,0,4,21,21,26,2,23,29,40,65,69,6,72,75,8,94,83,13

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927835   1 MIVDDDEAIRRLMRVNLELEG-FQ-VDEAPDGERCLAAIHQLRPDLVVLDVAMPGIDGLSVARTLraDPAVAEvKILMVS 78
PRK11697       5 LIVDDEPLAREELRELLQEEGdIEiVGECSNAIEALGAIHRLKPDVVFLDIQMPRISGLELVGML--DPEHMP-YIVFVT 81

                         90       100
                 ....*....|....*....|....*....
gi 117927835  79 ALarsedvergrlagaDAYLTKPFEPDAF 107
PRK11697      82 AF--------------DEYAIKAFEEHAF 96

-1

137611

PRK09958

DNA-binding transcriptional activator EvgA; Provisional

false

true

false

204

1e-06

47.59

48.53

3,0,3,24,24,28,46,72,74,28

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927835   1 MIVDDDEAIRRLMRVNLELEGFQV-DEAPDGERCLAAIHQLRPDLVVLDVAMPGIDGLSVARTLRADPAVAevKILMVSA 79
PRK09958       4 IIIDDHPLAIAAIRNLLIKNDIEIlAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQVLETLRKRQYSG--IIIIVSA 81

                         90       100
                 ....*....|....*....|.
gi 117927835  80 LARSEDVERGRLAGADAYLTK 100
PRK09958      82 KNDHFYGKHCADAGANGFVSK 102

-1

139064

PRK12555

chemotaxis-specific methylesterase; Provisional

false

true

false

340

1e-06

47.69

29.71

4,1,5,13,14,20,56,73,76,7,80,85,21

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927835   2 IVDDDEAIRRLMR--VNLELEGFQVDEAPDGERCLAAIHQLRPDLVVLDVAMPGIDGLSVARTLRADPAVAevkILMVSA 79
PRK12555       6 IVDDSALAREALRriIARRPDHRVLGVATDGLQARDLCKAQPPDVVLLDLEMPRMDGLTFLRRIMRRRPCP---VLIVSS 82

                         90       100
                 ....*....|....*....|....
gi 117927835  80 L--ARSEDVERGRLAGADAYLTKP 101
PRK12555      83 LteAGASITYEALGAGALDAVDKP 106

-1

138099

PRK10701

DNA-binding transcriptional regulator RstA; Provisional

false

true

false

240

1e-06

47.40

26.25

1,2,6,63

                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 117927835   3 VDDDEAIRRLMRVNLELEGFQVDEAPDGERCLAAIHQLRPDLVVLDVAMPGIDGLSVARTLRA 65
PRK10701       7 VEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEETILREQPDLVLLDIMLPGKDGMTICRDLRP 69

-1

33502

COG3707

AmiR

Response regulator with putative antiterminator output domain [Signal transduction mechanisms]

Response regulator with putative antiterminator output domain [Signal transduction...

false

true

false

194

3e-06

46.39

52.58

3,0,8,23,23,32,47,73,79,31

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927835   1 MIVDDDEAIRRLMRVNLELEGFQ-VDEAPDGERCLAAIHQLRPDLVVLDVAMPGIDGLSVARTLRADPAVAevkILMVSA 79
COG3707        9 LVADDEALTRMDIREGLLEAGYQrVGEAADGLEAVEVCERLQPDVVILDIEMPRRDIIEALLLASENVARP---IVALTA 85

                         90       100
                 ....*....|....*....|....*
gi 117927835  80 LARSEDVERGRLAGADAYLTKPFEP 104
COG3707       86 YSDPALIEAAIEAGVMAYIVKPLDE 110

-1

139916

PRK13856

two-component response regulator VirG; Provisional

false

true

false

241

3e-05

42.88

45.23

4,0,4,66,69,70,10,80,80,8,88,90,23

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927835   1 MIVDDDEAIRRLMRVNLELEGFQVDEAPDGERCLAAIHQLRPDLVVLDVAMPGIDGLSVARTLRADpavAEVKILMVSAl 80
PRK13856       5 LVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLSSETVDVVVVDLNLGREDGLEIVRSLATK---SDVPIIIISG- 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 117927835  81 ARSEDVER--GRLAGADAYLTKPFEPDAFVQLI 111
PRK13856      81 DRLEEADKvvALELGATDFIAKPFGTREFLARI 113

-1

138397

PRK11091

aerobic respiration control sensor protein ArcB; Provisional

false

true

false

779

7e-05

41.52

12.20

6,16,544,15,34,559,8,42,570,24,66,601,4,74,605,14,91,619,20

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927835  17 LELEGFQVDEAPDGErclAAIHQLRP---DLVVLDVAMPGIDGLSVARTLRAD-------PAVAevkiLMVSALARSEDV 86
PRK11091     545 LEKLGNSVDVAMTGK---DALEMFKPgeyDLVLLDIQLPDMTGLDVARELRERygredlpPLVA----LTANVLKDKQEY 617

                         90       100
                 ....*....|....*....|....*
gi 117927835  87 ERgrlAGADAYLTKPFEPDAFVQLI 111
PRK11091     618 LD---AGMDDVLSKPLSVPALTAMI 639

-1

131961

TIGR02915

PEP_resp_reg

putative PEP-CTERM system response regulator

false

true

false

445

2e-04

40.50

23.82

5,0,1,14,16,15,35,51,51,7,58,63,9,70,72,35

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927835   1 MIVDDDEAIRRLMRvnLELEGFQVDEAPDGERCLAAIHQLRPDLVVLDVAM-PGIDGLS-----VARTLRADPavaEVKI 74
TIGR02915      2 LIVEDDLGLQKQLK--WSFADYELAVAADRESAIALVRRHEPAVVTLDLGLpPDADGASeglaaLQQILAIAP---DTKV 76

                         90       100       110
                 ....*....|....*....|....*....|.
gi 117927835  75 LMVSALARSEDVERGRLAGADAYLTKPFEPD 105
TIGR02915     77 IVITGNDDRENAVKAIGLGAYDFYQKPIDPD 107

-1

137598

PRK09935

transcriptional regulator FimZ; Provisional

false

true

false

210

4e-04

39.11

47.62

6,0,6,21,21,28,21,42,50,19,63,69,15,80,84,11,91,97,9

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927835   1 MIVDDDEAIRRLMRVNLELEG-FQVDEAPDGERCLAAIHQLRP-DLVVLDVAMPGIDGLSVARtlRADPAVAEVKILMVS 78
PRK09935       7 IIMDEHPIVRMSIEVLLQKNSnIQVVLKTDDSRITIDYLRTYPvDLVILDIELPGTDGFTLLK--RIKQIQETVKVLFLS 84

                         90       100
                 ....*....|....*....|....
gi 117927835  79 alARSEDVERGRL--AGADAYLTK 100
PRK09935      85 --SKSECFYAGRAirAGANGFVSK 106

-1

137400

PRK09581

pleD

response regulator PleD; Reviewed

false

true

false

457

0.002

36.44

22.54

3,0,158,7,9,165,10,19,176,85

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927835   1 MIVDDDEaiRRLMRVNLEL-EGFQVDEAPDGERCLAAIHQLRPDLVVLDVAMPGIDGLSVARTLRADPAVAEVKILMVSA 79
PRK09581     159 LLVDDDV--SQAERIANILkEEFRVDVLSDPEEALIRAAEGNYDLIIVSASFENYDPLRLCSQLRSKERTRYVPILLLVD 236

                         90       100
                 ....*....|....*....|....*
gi 117927835  80 LARSEDVERGRLAGADAYLTKPFEP 104
PRK09581     237 EDEDPRLVKALELGVNDYLMRPIDK 261

-1

137892

PRK10430

DNA-binding transcriptional activator DcuR; Provisional

false

true

false

239

0.003

36.65

45.61

5,0,4,17,17,22,6,32,28,10,42,50,23,67,73,40

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927835   1 MIVDDDEAIRRLMRVNL-ELEGFQvdeapdgerCLAAIHQLRP------------DLVVLDVAMPGIDGLSVARTLRAdp 67
PRK10430       5 LIVDDDAMVAELNRRYVaQIPGFQ---------CCGTASTLEKakeiifnsdtpiDLILLDIYMQQENGLDLLPVLHE-- 73

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 117927835  68 AVAEVKILMVSALARSEDVERGRLAGADAYLTKPFEPDAF 107
PRK10430      74 AGCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRF 113

-1

active site	0	8	8	true	29071	cd00156	REC
phosphorylation site	1	1	1	true	29071	cd00156	REC
intermolecular recognition site	2	5	5	true	29071	cd00156	REC
dimerization interface	3	3	3	true	29071	cd00156	REC