NCBI Conserved Domain Search

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Conserved domains on [gi\|117927471\|ref\|YP_872022.1\|]
response regulator receiver protein [Acidothermus cellulolyticus 11B]

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List of domain hits		?

References:

Marchler-Bauer A et al. (2009), "CDD: specific functional annotation with the Conserved Domain Database.", Nucleic Acids Res.37(D)205-10.

Marchler-Bauer A, Bryant SH (2004), "CD-Search: protein domain annotations on the fly.", Nucleic Acids Res.32(W)327-331.

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of the residues that compose this conserved feature have been mapped to the query sequence.

Click on the triangle to view details about the feature, including a multiple sequence alignment of your query sequence and the protein sequences used to curate the domain model, where hash marks (#) above the aligned sequences show the location of the conserved feature residues.

The thumbnail image, if present, provides an approximate view of the feature's location in 3 dimensions. Click on the triangle for interactive 3D structure viewing options.

This image shows a graphical summary of conserved domains identified on the query sequence. The Show Concise/Full Display button at the top of the page can be used to select the desired level of detail: only top scoring hits (labeled illustration) or all hits (labeled illustration).
Domains are color coded according to superfamilies to which they have been assigned. Hits with scores that pass a domain-specific threshold (specific hits) are drawn in bright colors. Others (non-specific hits) and superfamily placeholders are drawn in pastel colors.
if a domain or superfamily has been annotated with functional sites (conserved features), they are mapped to the query sequence and indicated through sets of triangles with the same color and shade of the domain or superfamily that provides the annotation.
Mouse over the colored bars or triangles to see descriptions of the domains and features. click on the bars or triangles to view your query sequence embedded in a multiple sequence alignment of the proteins used to develop the corresponding domain model.

The table lists conserved domains identified on the query sequence. Click on the plus sign (+) on the left to display full descriptions, alignments, and scores. Click on the PssmId to view the multiple sequence alignment of the proteins used to develop the corresponding domain model.

To view your query sequence embedded in that multiple sequence alignment, click on the colored bars in the Graphical Summary portion of the search results page, or click on the triangles, if present, that represent functional sites (conserved features) mapped to the query sequence.

Concise Display shows only the best scoring domain model, in each hit category listed below except non-specific hits, for each region on the query sequence. (labeled illustration)
Full Display shows all domain models, in each hit category below, that meet or exceed the RPS-BLAST threshold for statistical significance. (labeled illustration)
Four types of hits can be shown, as available, for each region on the query sequence:

specific hits meet or exceed a domain-specific e-value threshold (illustrated example) and represent a very high confidence that the query sequence belongs to the same protein family as the sequences use to create the domain model
non-specific hits meet or exceed the RPS-BLAST threshold for statistical significance (default E-value cutoff of 0.01, or an E-value selected by user via the advanced search options)
the domain superfamily to which the specific and non-specific hits belong
multi-domain models that were computationally detected and are likely to contain multiple single domains

The CD-Search help document provides more detail about the tool and its features.

Retrieve proteins that contain one or more of the domains present in the query sequence, using the Conserved Domain Architecture Retrieval Tool (CDART).

Modify your query to search against a different database and/or use advanced search options

29071

cd00156

REC

Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers

Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC,...

true

false

true

113

4e-14

72.20

92.04

3,40,8,9,51,17,64,115,87,25

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927471  41 MRALLATLLsiEPDFDVVGVARDGAEAVDLVLREQPDLLVIDITMPVMSGTEAIRRIREANPRVRVAVLSGERQP----- 115
cd00156        9 IRELLRRLL--EKEGYEVVEAEDGEEALALLAEEKPDLILLDIMMPGMDGLELLRRIRKRGPDIPIIFLTAHGDDedave 86

                         90       100
                 ....*....|....*....|....*.
gi 117927471 116 -LPPGADAILVKGTVNEELIAVLRRL 140
cd00156       87 aLKAGADDYLTKPFSPEELLARIRAL 112

cl09944

142340

REC

Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC,...

109140

pfam00072

Response_reg

Response regulator receiver domain

false

111

1e-12

67.22

91.89

4,40,9,12,53,21,2,56,23,56,112,85,26

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927471  41 MRALLATLLSIEpDFdVVGVARDGAEAVDLVLREQPDLLVIDITMPVMSGTEAIRRIREANPRVRVAVLSGE------RQ 114
pfam00072     10 IRELLRQLLEKE-GY-VVAEADDGEEALELLKEKRPDLILLDIRMPGMDGLELLRRIRRRPPTTPVIVLTAHgdeedaVE 87

                         90       100
                 ....*....|....*....|....
gi 117927471 115 PLPPGADAILVKGTVNEELIAVLR 138
pfam00072     88 ALKAGANDFLSKPFDPEELVAALR 111

cl09944

142340

REC

Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC,...

-1

31127

COG0784

CheY

FOG: CheY-like receiver [Signal transduction mechanisms]

false

130

2e-07

50.23

86.92

5,40,16,10,51,26,23,74,50,37,111,93,21,132,115,14

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927471  41 MRALLATLLSiEPDFDVVGVARDGAEAVDLVLRE-QPDLLVIDITMPVMSGTEAIRRIREANPRVRVAVLSG------ER 113
COG0784       17 NRRLLKRLLE-DLGYEVVEAADGEEEALELLRELpQPDLILLDINMPGMDGIELLRRLRARGPNIPVILLTAyadeadRE 95

                         90       100       110
                 ....*....|....*....|....*....|....
gi 117927471 114 QPLPPGADAILVKGTVNEE-LIAVLRRLCRAGSQ 146
COG0784       96 RALAAGADDYLTKPIFLEEeLLAALRRLLARAAA 129

cl09944

142340

REC

Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC,...

-1

128724

smart00448

REC

cheY-homologous receiver domain

false

2e-04

40.26

80.00

2,40,11,12,54,23,32

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 117927471  41 MRALLATLLSIEpdFDVVGVARDGAEAVDLVLREQPDLLVIDITMP 86
smart00448    12 LRELLKALLERE--GYEVDEATDGEEALELLKEEKPDLILLDIMMP 55

cl09944

142340

REC

Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC,...

-1

138024

PRK10610

chemotaxis regulatory protein CheY; Provisional

false

129

0.002

36.54

52.71

2,40,16,10,51,26,58

                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 117927471  41 MRALLATLLSiEPDFDVVGVARDGAEAVDLVLREQPDLLVIDITMPVMSGTEAIRRIREANPRVRVAVL 109
PRK10610      17 MRRIVRNLLK-ELGFNNVEEAEDGVDALNKLQAGGFGFVISDWNMPNMDGLELLKTIRADGAMSALPVL 84

cl09944

142340

REC

Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC,...

-1

34367

COG4753

Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]

Response regulator containing CheY-like receiver domain and AraC-type DNA-binding...

false

true

false

475

5e-18

85.37

20.00

2,51,24,60,111,90,29

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927471  52 EPDFDVVGVARDGAEAVDLVLREQPDLLVIDITMPVMSGTEAIRRIREANPRVRVAVLSG------ERQPLPPGADAILV 125
COG4753       25 ALGIEVVGTAANGKEALELIQETQPDIVITDINMPGMDGLDLIKAIKEQSPDTEFIILSGydefeyAKKAMKLGVKDYLL 104

                         90
                 ....*....|....*
gi 117927471 126 KGTVNEELIAVLRRL 140
COG4753      105 KPVDKAELEEALKKI 119

-1

32379

COG2197

CitB

Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]

Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain...

false

true

false

211

7e-16

78.07

52.61

2,40,11,75,115,92,30

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927471  41 MRALLATLLSIEPDFDVVGVARDGAEAVDLVLREQPDLLVIDITMPVMSGTEAIRRIREANPRVRVAVLSGERQP----- 115
COG2197       12 VREGLRQLLELEPDLEVVGEASNGEEALDLARELKPDVVLLDLSMPGMDGLEALKQLRARGPDIKVVVLTAHDDPayvir 91

                         90       100       110
                 ....*....|....*....|....*....|.
gi 117927471 116 -LPPGADAILVKGTVNEELIAVLRRLCRAGS 145
COG2197       92 aLRAGADGYLLKDASPEELVEAIRAVAAGGT 122

-1

134369

PRK00742

chemotaxis-specific methylesterase; Provisional

false

true

false

345

6e-14

71.74

17.97

1,40,13,62

                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 117927471  41 MRALLATLLSIEPDFDVVGVARDGAEAVDLVLREQPDLLVIDITMPVMSGTEAIRRIREANP 102
PRK00742      14 MRRLLSEILNSDPDIEVVGTARDGLEAVEKIKKLNPDVITLDVEMPVMDGIEALRKIMALRP 75

-1

138058

PRK10651

transcriptional regulator NarL; Provisional

false

true

false

216

5e-12

65.47

48.61

2,40,17,74,114,97,25

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927471  41 MRALLATLLSIEPDFDVVGVARDGAEAVDLVLREQPDLLVIDITMPVMSGTEAIRRIREANPRVRVAVLSGERQ------ 114
PRK10651      18 LRTGVKQLISMAPDITVVGEASNGEQGIELAESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVFSVSNHeedvvt 97

                         90       100
                 ....*....|....*....|....*
gi 117927471 115 PLPPGADAILVKGTVNEELIAVLRR 139
PRK10651      98 ALKRGADGYLLKDMEPEDLLKALHQ 122

-1

131922

TIGR02875

spore_0_A

sporulation transcription factor Spo0A

false

true

false

262

4e-11

62.50

40.46

4,42,15,49,91,67,6,97,74,15,112,93,28

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927471  43 ALLATLLSIEPDFDVVGVARDGAEAVDLVLREQPDLLVIDITMPVMSGT---EAIRRI-REANPRVRVAVLSGE----RQ 114
TIGR02875     16 NLLKEYLAAQPDMEVVGVAHNGVDALELIKEQQPDVVVLDIIMPHLDGIgvlEKLNEIeLSARPRVIMLSAFGQekitQR 95

                         90       100
                 ....*....|....*....|....*.
gi 117927471 115 PLPPGADAILVKGTVNEELIAVLRRL 140
TIGR02875     96 AVALGADYYVLKPFDLEILAARIRQL 121

-1

32383

COG2201

CheB

Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]

Chemotaxis response regulator containing a CheY-like receiver domain and a...

false

true

false

350

3e-10

59.53

17.71

1,40,12,62

                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 117927471  41 MRALLATLLSIEPDFDVVGVARDGAEAVDLVLREQPDLLVIDITMPVMSGTEAIRRIREANP 102
COG2201       13 MRKVISDILNSDPDIEVVGTARNGREAIDKVKKLKPDVITLDVEMPVMDGLEALRKIMRLRP 74

-1

139064

PRK12555

chemotaxis-specific methylesterase; Provisional

false

true

false

340

6e-10

58.48

17.94

1,41,13,61

                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 117927471  42 RALLATLLSIEPDFDVVGVARDGAEAVDLVLREQPDLLVIDITMPVMSGTEAIRRIREANP 102
PRK12555      14 REALRRIIARRPDHRVLGVATDGLQARDLCKAQPPDVVLLDLEMPRMDGLTFLRRIMRRRP 74

-1

137869

PRK10403

transcriptional regulator NarP; Provisional

false

true

false

215

2e-09

56.41

48.37

2,40,17,75,115,98,23

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927471  41 MRALLATLLSIEPDFDVVGVARDGAEAVDLVLREQPDLLVIDITMPVMSGTEAIRRIREANPRVRVAVLSGERQP----- 115
PRK10403      18 MRRGVRQLLELDPGFEVVAEAGDGASAIDLANRLDIDVILLDLNMKGMSGLDTLNALRRDGVTAQIIILTVSDASsdifa 97

                         90       100
                 ....*....|....*....|....
gi 117927471 116 -LPPGADAILVKGTVNEELIAVLR 138
PRK10403      98 lIDAGADGYLLKDSDPEVLLEAIR 121

-1

137400

PRK09581

pleD

response regulator PleD; Reviewed

false

true

false

457

7e-09

54.93

20.79

6,54,26,4,59,30,39,99,69,4,103,79,8,111,89,2,113,92,29

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927471  55 FDVVgVARDGAEAVDLVLREQPDLLVIDITMPVMSGTEAIRRIReANPR------VRVAVLSG--ER-QPLPPGADAILV 125
PRK09581      27 YTVL-TASSGAEAIEICEREQPDIILLDVMMPGMDGFEVCRRLK-SDPAtahipvVMVTALDDpsDRvRGLEAGADDFLT 104

                         90
                 ....*....|....*..
gi 117927471 126 KGTVNEELIAVLRRLCR 142
PRK09581     105 KPINDVALFARVKSLTR 121

-1

137324

PRK09483

response regulator; Provisional

false

true

false

216

1e-08

54.34

53.24

4,40,12,74,114,87,4,118,96,22,141,118,9

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927471  41 MRALLATLLSIEPDFDVVGVARDGAEAVDLVLREQPDLLVIDITMPVMSGTEAIRRIREANPRVRVAVLSGERQ-PLPP- 118
PRK09483      13 VRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMNMPGIGGLEATRKILRSTPDVKIIMLTVHTEnPLPAk 92

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 117927471 119 ----GADAILVKGTVNEELIAVLRRLcRAGSQHDAP 150
PRK09483      93 vmqaGAAGYLSKGAAPQEVVSAIRSV-HSGQRYIAS 127

-1

31088

COG0745

OmpR

Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]

Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-...

false

true

false

229

1e-08

54.19

51.53

6,40,11,12,53,23,5,59,28,11,71,39,28,99,68,16,115,90,39

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927471  41 MRALLATLLSIEpDFDVVgVARDGAEAVDLvLREQPDLLVIDITMPVMSGTEAIRRIRE-ANPRVRVAVLSGERQP---- 115
COG0745       12 LAELLKEYLEEE-GYEVD-VAADGEEALEA-AREQPDLVLLDLMLPDLDGLELCRRLRAkKGSGPPIIVLTARDDEedrv 88

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 117927471 116 --LPPGADAILVKGTVNEELIAVLRRLCRAGSQHDAPPPAD 154
COG0745       89 lgLEAGADDYLTKPFSPRELLARLRALLRRNAGASRAEASE 129

-1

34203

COG4565

CitB

Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]

Response regulator of citrate/malate metabolism [Transcription / Signal transduction...

false

true

false

224

2e-08

53.29

29.91

1,43,14,67

                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 117927471  44 LLATLLSIEPDFDVVGVARDGAEAVDLVLREQPDLLVIDITMPVMSGTEAIRRIREANPRVRVAVLS 110
COG4565       15 IHRRYVKQIPGFSVVGTAGTLEEAKMIIEEFKPDLILLDIYMPDGNGIELLPELRSQHYPVDVIVIT 81

-1

32386

COG2204

AtoC

Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]

Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding...

false

true

false

464

8e-08

51.45

22.41

4,39,14,13,53,27,5,59,32,53,112,91,27

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927471  40 GMRALLATLLSIEpDFDVVgVARDGAEAVDLVLREQPDLLVIDITMPVMSGTEAIRRIREANPRVRVAVLSGE------R 113
COG2204       15 DIRELLEQALELA-GYEVV-TAESAEEALEALSESPFDLVLLDIRMPGMDGLELLKEIKSRDPDLPVIVMTGHgdidtaV 92

                         90       100
                 ....*....|....*....|....*.
gi 117927471 114 QPLPPGADAILVKGTVNEELIAVLRR 139
COG2204       93 EALRLGAFDFLEKPFDLDRLLAIVER 118

-1

138717

PRK11697

putative two-component response-regulatory protein YehT; Provisional

false

true

false

239

1e-07

50.65

22.18

1,41,13,53

                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 117927471  42 RALLATLLSIEPDFDVVGVARDGAEAVDLVLREQPDLLVIDITMPVMSGTEAI 94
PRK11697      14 REELRELLQEEGDIEIVGECSNAIEALGAIHRLKPDVVFLDIQMPRISGLELV 66

-1

138540

PRK11361

acetoacetate metabolism regulatory protein AtoC; Provisional

false

true

false

457

3e-07

49.46

14.88

3,40,15,12,53,27,5,59,32,51

                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927471  41 MRALLATLLSIEpDFDVVgVARDGAEAVDLVLREQPDLLVIDITMPVMSGTEAIRRIREANPRVRVAVLS 110
PRK11361      16 VRRMLSTAFALQ-GFETH-CANNGRTALHLFADIHPDVVLMDIRMPEMDGIKALKEMRSHETRTPVILMT 83

-1

33090

COG3279

LytT

Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]

Response regulator of the LytR/AlgR family [Transcription / Signal transduction...

false

true

false

244

4e-07

48.81

43.03

2,41,13,80,121,97,21

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927471  42 RALLATLLSIEPDFDVVGVARDGAEAVDLVLREQPDLLVIDITMPVMSGTEAIRRIREANPRVRVAVLSGERQPLPPGAD 121
COG3279       14 REELRRILNEIPDIEIVGEAENGEEALQLLQGLRPDLVFLDIAMPDINGIELAARIRKGDPRPAIVFVTAHDEYAVAAFE 93

                         90       100
                 ....*....|....*....|....*
gi 117927471 122 ----AILVKGTVNEELIAVLRRLCR 142
COG3279       94 vealDYLLKPISEERLAKTLERLRR 118

-1

138091

PRK10693

response regulator of RpoS; Provisional

false

true

false

337

2e-06

46.62

19.88

2,41,19,13,56,32,54

                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 117927471  42 RALLATLLSIEPDfdVVGVARDGAEAVDLVLREQPDLLVIDITMPVMSGTEAIRRIREANPRVRVAVLS 110
PRK10693      20 RSLLDSWFSSLGA--TTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKFVEHLRNRGDQTPVLVIS 86

-1

137546

PRK09836

DNA-binding transcriptional activator CusR; Provisional

false

true

false

226

9e-06

44.62

42.04

2,56,25,55,111,86,34

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927471  57 VVGVARDGAEAVDLVLREQPDLLVIDITMPVMSGTEAIRRIREANPRVRVAVLSG------ERQPLPPGADAILVKGTVN 130
PRK09836      26 VVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDIVRMLRSANKGMPILLLTAlgtiehRVKGLELGADDYLVKPFAF 105

                         90
                 ....*....|....*
gi 117927471 131 EELIAVLRRLCRAGS 145
PRK09836     106 AELLARVRTLLRRGA 120

-1

33243

COG3437

Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]

Response regulator containing a CheY-like receiver domain and an HD-GYP domain [...

false

true

false

360

1e-05

43.75

28.89

5,41,26,12,54,38,4,59,42,43,102,88,9,111,103,27

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927471  42 RALLATLLSIEPdFDVVgVARDGAEAVDLVLREQPDLLVIDITMPVMSGTEAIRRIREANP---RVRVAVLSG------E 112
COG3437       27 LEALRQLLRMIG-YRVI-EAENGEEALKLLQEEPPDLVLLDVRMPEMDGAEVLNKLKAMSPstrRIPVILLTAyadsedR 104

                         90       100
                 ....*....|....*....|....*.
gi 117927471 113 RQPLPPGADAILVKGTVNEELIAVLR 138
COG3437      105 QRALEAGADDYLSKPISPKELVARVS 130

-1

130877

TIGR01818

ntrC

nitrogen regulation protein NR(I)

false

true

false

463

2e-05

43.57

10.37

1,62,29,48

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 117927471  63 DGAEAVDLVLREQPDLLVIDITMPVMSGTEAIRRIREANPRVRVAVLS 110
TIGR01818     30 NAASVLRALARGQPDLLITDVRMPGEDGLDLLPQIKKRHPQLPVIVMT 77

-1

133606

CHL00148

orf27

Ycf27; Reviewed

false

true

false

240

3e-05

42.72

43.75

7,41,18,11,53,29,5,59,34,39,98,74,3,101,78,8,109,89,26,135,119,4

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927471  42 RALLATLLSIEpDFDVVgVARDGAEAVDLVLREQPDLLVIDITMPVMSGTEAIRRIR-EAN-PRVRVAVL---SGERQPL 116
CHL00148      19 RRILETRLSII-GYEVI-TASDGEEALKLFHQEQPDLVILDVMMPKLDGYGVCQEIRkESDvPIIMLTALgdvSDRITGL 96

                         90       100
                 ....*....|....*....|....*..
gi 117927471 117 PPGADAILVKGTVNEELIA----VLRR 139
CHL00148      97 ELGADDYVVKPFSPKELEArirsVLRR 123

-1

137846

PRK10360

DNA-binding transcriptional activator UhpA; Provisional

false

true

false

196

4e-05

42.70

54.59

2,40,12,72,112,87,32

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927471  41 MRALLATLLSIEPDFDVVGVARDGAEAVDLVLREQPDLLVIDITMPVMSGTEAIRRIREANPRVRVAVLSGE---RQPLP 117
PRK10360      13 VRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSVHDSPalvEQALN 92

                         90       100
                 ....*....|....*....|....*..
gi 117927471 118 PGADAILVKGTVNEELIAVLRRLCRAG 144
PRK10360      93 AGARGFLSKRCSPDELIAAVHTVATGG 119

-1

33728

COG3947

Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Response regulator containing CheY-like receiver and SARP domains [Signal transduction...

false

true

false

361

6e-05

41.88

15.24

1,55,24,55

                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 117927471  56 DVVGVARDGAEAVDLVLREQPDLLVIDITMPVMSGTEAIRRIREANPRVRVAVLS 110
COG3947       25 HEVRSCSHPVEALDLLEVFKPDLIFLDIVMPYMNGIEFAEQVRDIESAVPIIFIS 79

-1

33501

COG3706

PleD

Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]

Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal...

false

true

false

435

8e-05

41.44

24.83

5,40,143,13,54,156,4,59,160,39,98,201,17,115,224,27

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927471  41 MRALLATLLSIEPdFDVVgVARDGAEAVDLVLREQPDLLVIDITMPVMSGTEAIRRIR--EANPRVRVAVLSGERQP--- 115
COG3706      144 QRERLRRILQVEG-FRVV-EATDGEEALLQLAELPPDLVLLDANMPDMDGLELCTRLRqlERTRDIPIILLSSKDDDelv 221

                         90       100       110
                 ....*....|....*....|....*....|
gi 117927471 116 ---LPPGADAILVKGTVNEELIAVLRRLCR 142
COG3706      222 vraFELGVNDYITKPIEEGELRARLRRQLR 251

-1

33502

COG3707

AmiR

Response regulator with putative antiterminator output domain [Signal transduction mechanisms]

Response regulator with putative antiterminator output domain [Signal transduction...

false

true

false

194

9e-05

41.00

46.91

3,51,26,35,87,61,28,115,95,22

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927471  52 EPDFDVVGVARDGAEAVDLVLREQPDLLVIDITMPvMSGTEAIRRIREANPRVRVAVLSGERQP------LPPGADAILV 125
COG3707       27 EAGYQRVGEAADGLEAVEVCERLQPDVVILDIEMP-RRDIIEALLLASENVARPIVALTAYSDPalieaaIEAGVMAYIV 105

                         90
                 ....*....|..
gi 117927471 126 KGTVNEELIAVL 137
COG3707      106 KPLDESRLLPIL 117

-1

130454

TIGR01387

cztR_silR_copR

heavy metal response regulator

false

true

false

218

1e-04

40.94

45.87

2,56,23,57,113,86,37

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927471  57 VVGVARDGAEAVDLVLREQPDLLVIDITMPVMSGTEAIRRIREANPRVRVAVLSGER------QPLPPGADAILVKGTVN 130
TIGR01387     24 VVDAASNGRDGLHLALKDDYDLIILDVMLPGMDGWQILQTLRRSGKQTPVLFLTARDsvadkvKGLDLGADDYLVKPFSF 103

                         90       100
                 ....*....|....*....|
gi 117927471 131 EELIAVLRRLCRAGSQHDAP 150
TIGR01387    104 SELLARVRTLLRRSHSLNST 123

-1

138305

PRK10955

DNA-binding transcriptional regulator CpxR; Provisional

false

true

false

232

1e-04

40.97

43.97

6,42,14,10,53,24,5,59,29,11,71,40,28,100,68,18,118,92,24

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927471  43 ALLATLLSIEpDFDVVgVARDGAEAVDLvLREQPDLLVIDITMPVMSGTEAIRRIREaNPRVRVAVLSGERQPLPP---- 118
PRK10955      15 SLLKELLEME-GFNVI-VAHDGEQALDL-LDDSIDLLLLDVMMPKKNGIDTLKALRQ-THQTPVIMLTARGSELDRvlgl 90

                         90       100
                 ....*....|....*....|....*.
gi 117927471 119 --GADAILVKGTVNEELIAVLRRLCR 142
PRK10955      91 elGADDYLPKPFNDRELVARIRAILR 116

-1

137612

PRK09959

hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional

false

true

false

1197

1e-04

40.48

4.76

1,57,984,57

                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 117927471   58 VGVARDGAEAVDLVLREQPDLLVIDITMPVMSGTEAIRRIREANPRVRVAVLSGERQ 114
PRK09959      985 VDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFELTRKLREQNSSLPIWGLTANAQ 1041

-1

137310

PRK09468

ompR

osmolarity response regulator; Provisional

false

true

false

239

2e-04

39.98

45.19

7,39,15,11,51,26,10,63,36,6,69,43,41,110,86,3,113,93,21,134,118,5

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927471  40 GMRALLATLLSiEPDFDVVGVArdGAEAVD-LVLREQPDLLVIDITMPVMSGTEAIRRIREANPRVRVAVLS--GER--- 113
PRK09468      16 RLRALLERYLT-EQGFQVRSAA--NAEQMDrLLTRESFHLMVLDLMLPGEDGLSICRRLRSQNNPTPIIMLTakGEEvdr 92

                         90       100       110
                 ....*....|....*....|....*....|.
gi 117927471 114 -QPLPPGADAILVKGTVNEELI----AVLRR 139
PRK09468      93 iVGLEMGADDYLPKPFNPRELLarirAVLRR 123

-1

131209

TIGR02154

PhoB

phosphate regulon transcriptional regulatory protein PhoB

false

true

false

226

2e-04

40.00

48.23

8,40,13,12,53,25,5,59,30,40,100,70,5,105,78,5,110,85,5,115,94,20,135,118,4

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927471  41 MRALLATLLSIEpDFDVVgVARDGAEAVDLVLREQPDLLVIDITMPVMSGTEAIRRIREaNPRVR---VAVLS--GERQP 115
TIGR02154     14 IRELIAYNLEKA-GYDVV-EAGDGDEALTLINERGPDLILLDWMLPGTSGIELCRRLRR-RPETRaipIIMLTarGEEED 90

                         90       100       110
                 ....*....|....*....|....*....|..
gi 117927471 116 ----LPPGADAILVKGTVNEELIA----VLRR 139
TIGR02154     91 rvrgLETGADDYITKPFSPRELLArikaVLRR 122

-1

138397

PRK11091

aerobic respiration control sensor protein ArcB; Provisional

false

true

false

779

3e-04

39.59

13.48

3,57,551,48,105,603,2,107,609,47

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927471  58 VGVARDGAEAVDLVLREQPDLLVIDITMPVMSGTEAIRRIREANPRVR----VA----VLSGERQPLPPGADAILVKGTV 129
PRK11091     552 VDVAMTGKDALEMFKPGEYDLVLLDIQLPDMTGLDVARELRERYGREDlpplVAltanVLKDKQEYLDAGMDDVLSKPLS 631

                         90       100
                 ....*....|....*....|....*
gi 117927471 130 NEELIAVLRRLCRAGSQHDAPPPAD 154
PRK11091     632 VPALTAMIKKFWDTQDKEESTVTTE 656

-1

138409

PRK11107

hybrid sensory histidine kinase BarA; Provisional

false

true

false

920

3e-04

39.49

11.30

6,57,694,42,99,740,5,105,745,3,108,752,5,113,758,28,141,787,11

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927471  58 VGVARDGAEAVDLVLREQPDLLVIDITMPVMSGTEAIRRIRE----ANPRVrVAV----LSGER-QPLPPGADAILVKGT 128
PRK11107     695 VVLCDSGHQAVELAKQRPFDLIFMDIQMPGMDGIRACELIRQlphnQNTPI-IAVtahaMAGEReRLLGAGMDDYLAKPI 773

                         90       100
                 ....*....|....*....|....*
gi 117927471 129 VNEELIAVLRRLC-RAGSQHDAPPP 152
PRK11107     774 DEAALKQVLLRWKpGPKFSSRVVTP 798

-1

138391

PRK11083

DNA-binding response regulator CreB; Provisional

false

true

false

229

5e-04

38.81

43.23

3,63,35,52,115,93,23,138,117,17

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927471  64 GAEAVDLVLREQPDLLVIDITMPVMSGTEAIRRIREANPRVRVAVLSGERQP------LPPGADAILVKGTVNEELIAVL 137
PRK11083      36 GLPALDKLRQQPPDLVILDVGLPDISGFELCRQLRAFHPALPVIFLTARSDEvdrlvgLEIGADDYVAKPFSPREVAARV 115

                         90
                 ....*....|....*....
gi 117927471 138 R-RLCRAGSQHDAPPPADC 155
PRK11083     116 RtILRRVKKFAAPSPVIRI 134

-1

33501

COG3706

PleD

Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]

Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal...

false

true

false

435

5e-04

38.75

21.84

2,57,14,58,115,76,33

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927471  58 VGVARDGAEAVDLVLREQPDLLVIDITMPVMSGTEAIRRIREANPRVRVAVLSGERQP----LPPGADAILVKGTVNEEL 133
COG3706       15 VATAKKGLIALAILLDHKPDYKLLDVMMPGMDGFELCRRLKAEPATVVMVTALDDSAPrvrgLKAGADDFLTKPVNDSQL 94

                         90
                 ....*....|....*
gi 117927471 134 IAVLRRLCRAGSQHD 148
COG3706       95 FLRAKSLVRLKCSID 109

-1

34204

COG4566

TtrR

Response regulator [Signal transduction mechanisms]

false

true

false

202

0.001

37.91

51.49

4,39,14,13,53,27,8,62,35,50,112,91,27

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927471  40 GMRALLATLLSIEpDFDVVGVArDGAEAVDLVLREQPDLLVIDITMPVMSGTEAIRRIREANPRVRVAVLSGE------R 113
COG4566       15 SVRDALAFLLESA-GFQVKCFA-SAEEFLAAAPLDRPGCLLLDVRMPGMSGLELQDRLAERGIRLPVIFLTGHgdipmaV 92

                         90       100
                 ....*....|....*....|....*.
gi 117927471 114 QPLPPGADAILVKGTVNEELIAVLRR 139
COG4566       93 QAMKAGAVDFLEKPFSEQDLLDAVER 118

-1

138195

PRK10816

DNA-binding transcriptional regulator PhoP; Provisional

false

true

false

223

0.001

37.49

47.09

3,57,26,56,113,88,21,134,113,18

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927471  58 VGVARDGAEAVDLVLREQPDLLVIDITMPVMSGTEAIRRIREANPRVRVAVLSGER------QPLPPGADAILVKGTVNE 131
PRK10816      27 VDAAEDAKEADYYLNEHLPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTAREswqdkvEVLSAGADDYVTKPFHIE 106

                         90       100
                 ....*....|....*....|....*
gi 117927471 132 ELI----AVLRRLCRAGSQHDAPPP 152
PRK10816     107 EVMarmqALMRRNSGLASQVISLPP 131

-1

137611

PRK09958

DNA-binding transcriptional activator EvgA; Provisional

false

true

false

204

0.002

37.18

24.51

1,48,18,50

                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 117927471  49 LSIEPDFDVVGVARDGAEAVDLVLREQPDLLVIDITMPVMSGTEAIRRIR 98
PRK09958      19 LLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQVLETLR 68

-1

137114

PRK09191

two-component response regulator; Provisional

false

true

false

261

0.004

36.00

17.24

2,55,162,32,87,195,12

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 117927471  56 DVVGVARDGAEAVDLVLREQPDLLVIDITMPV-MSGTEAIRRIRE 99
PRK09191     163 RVVGIARTRAEAVALAKKTRPGLILADIQLADgSSGIDAVNDILK 207

-1

132001

TIGR02956

TMAO_torS

TMAO reductase sytem sensor TorS

false

true

false

968

0.005

35.52

10.64

3,57,728,34,91,765,21,112,792,39

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927471  58 VGVARDGAEAVDLVLREQPDLLVIDITMPVMSGT---EAIRRIREANPRVRVAVLSGE------RQPLPPGADAILVKGT 128
TIGR02956    729 VTLAESGQSALECFHQHAFDLALLDINLPDGDGVtllQQLRAIYGAKNEVKFIAFSAHvfnedvAQYLAAGFDGFLAKPV 808

                         90       100
                 ....*....|....*....|...
gi 117927471 129 VNEELIAVLRRLCRAGSQHDAPP 151
TIGR02956    809 VEEQLTAMIAVILAGGKSNTEAP 831

-1

137598

PRK09935

transcriptional regulator FimZ; Provisional

false

true

false

210

0.005

35.64

35.24

3,40,14,30,71,44,5,76,50,38

                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 117927471  41 MRALLATLLSIEPDFDVVGVARDGAEAVDLvLREQP-DLLVIDITMPVMSGTEAIRRIREANPRVRVAVLSGERQ 114
PRK09935      15 VRMSIEVLLQKNSNIQVVLKTDDSRITIDY-LRTYPvDLVILDIELPGTDGFTLLKRIKQIQETVKVLFLSSKSE 88

-1

138099

PRK10701

DNA-binding transcriptional regulator RstA; Provisional

false

true

false

240

0.005

35.46

42.50

5,53,24,9,63,33,32,95,67,19,114,89,28,145,117,9

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927471  54 DFDVVGVARdGAEAVDLVLREQPDLLVIDITMPVMSGTEAIR--RIREANPRVRVAVLSGERQ---PLPPGADAILVKGT 128
PRK10701      25 DIDVTVEPR-GDRAEETILREQPDLVLLDIMLPGKDGMTICRdlRPKWSGPIVLLTSLDSDMNhilALEMGACDYILKTT 103

                         90       100
                 ....*....|....*....|....*.
gi 117927471 129 VNEELIAVLRRLCRagsQHDAPPPAD 154
PRK10701     104 PPAVLLARLRLHLR---QNEQATQAK 126

-1

138282

PRK10923

glnG

nitrogen regulation protein NR(I); Provisional

false

true

false

469

0.006

35.29

10.23

1,62,34,48

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 117927471  63 DGAEAVDLVLREQPDLLVIDITMPVMSGTEAIRRIREANPRVRVAVLS 110
PRK10923      35 NGNEVLEALASKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMT 82

-1

137850

PRK10365

transcriptional regulatory protein ZraR; Provisional

false

true

false

441

0.009

34.62

23.13

2,57,31,54,111,91,42

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117927471  58 VGVARDGAEAVDLVLREQPDLLVIDITMPVMSGTEAIRRIREANPRVRVAVLSG------ERQPLPPGADAILVKGTVNE 131
PRK10365      32 VALANSGRQALEQVREQVFDLVLCDVRMAEMDGIATLKEIKALNPAIPVLIMTAyssvetAVEALKTGALDYLIKPLDFD 111

                         90       100
                 ....*....|....*....|..
gi 117927471 132 ELIAVLRRLCRAGSQHDAPPPA 153
PRK10365     112 NLQATLEKALAHTHSIDAETPA 133

-1

active site	0	6	8	true	29071	cd00156	REC
phosphorylation site	1	1	1	true	29071	cd00156	REC
intermolecular recognition site	2	5	5	true	29071	cd00156	REC
dimerization interface	3	3	3	true	29071	cd00156	REC