NCBI Conserved Domain Search

NewSearch

CDD Home

Conserved domains on [gi\|116669846\|ref\|YP_830779.1\|]
putative adenylate/guanylate cyclase [Arthrobacter sp. FB24]

Graphical summary show options »	Show site features Horizontal zoom: ×	?



List of domain hits		?

References:

Marchler-Bauer A et al. (2009), "CDD: specific functional annotation with the Conserved Domain Database.", Nucleic Acids Res.37(D)205-10.

Marchler-Bauer A, Bryant SH (2004), "CD-Search: protein domain annotations on the fly.", Nucleic Acids Res.32(W)327-331.

Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH

of the residues that compose this conserved feature have been mapped to the query sequence.

Click on the triangle to view details about the feature, including a multiple sequence alignment of your query sequence and the protein sequences used to curate the domain model, where hash marks (#) above the aligned sequences show the location of the conserved feature residues.

The thumbnail image, if present, provides an approximate view of the feature's location in 3 dimensions. Click on the triangle for interactive 3D structure viewing options.

This image shows a graphical summary of conserved domains identified on the query sequence. The Show Concise/Full Display button at the top of the page can be used to select the desired level of detail: only top scoring hits (labeled illustration) or all hits (labeled illustration).
Domains are color coded according to superfamilies to which they have been assigned. Hits with scores that pass a domain-specific threshold (specific hits) are drawn in bright colors. Others (non-specific hits) and superfamily placeholders are drawn in pastel colors.
if a domain or superfamily has been annotated with functional sites (conserved features), they are mapped to the query sequence and indicated through sets of triangles with the same color and shade of the domain or superfamily that provides the annotation.
Mouse over the colored bars or triangles to see descriptions of the domains and features. click on the bars or triangles to view your query sequence embedded in a multiple sequence alignment of the proteins used to develop the corresponding domain model.

The table lists conserved domains identified on the query sequence. Click on the plus sign (+) on the left to display full descriptions, alignments, and scores. Click on the PssmId to view the multiple sequence alignment of the proteins used to develop the corresponding domain model.

To view your query sequence embedded in that multiple sequence alignment, click on the colored bars in the Graphical Summary portion of the search results page, or click on the triangles, if present, that represent functional sites (conserved features) mapped to the query sequence.

Concise Display shows only the best scoring domain model, in each hit category listed below except non-specific hits, for each region on the query sequence. (labeled illustration)
Full Display shows all domain models, in each hit category below, that meet or exceed the RPS-BLAST threshold for statistical significance. (labeled illustration)
Four types of hits can be shown, as available, for each region on the query sequence:

specific hits meet or exceed a domain-specific e-value threshold (illustrated example) and represent a very high confidence that the query sequence belongs to the same protein family as the sequences use to create the domain model
non-specific hits meet or exceed the RPS-BLAST threshold for statistical significance (default E-value cutoff of 0.01, or an E-value selected by user via the advanced search options)
the domain superfamily to which the specific and non-specific hits belong
multi-domain models that were computationally detected and are likely to contain multiple single domains

The CD-Search help document provides more detail about the tool and its features.

Retrieve proteins that contain one or more of the domains present in the query sequence, using the Conserved Domain Architecture Retrieval Tool (CDART).

Modify your query to search against a different database and/or use advanced search options

109276

pfam00211

Guanylate_cyc

Adenylate and Guanylate cyclase catalytic domain

true

false

185

1e-14

75.75

94.59

6,258,9,59,317,69,25,342,97,7,349,117,5,354,123,47,401,172,12

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116669846 259 AVGFADLVSYTSLSRRMNEKTLAQLVQRFENKCAEIISVGGGRLVKTVGDEVLYIAETP-AAGAEISLALSQAFTEDEIL 337
pfam00211     10 TILFADIVGFTALSSRHSPEELVRLLNDLYTRFDELLDKHGVYKVKTIGDAYMAASGLPpAAAHHAALLADMALDMVETI 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116669846 338 PEARV---AMVWGRI-------------LSRLG-DIYGPTVNLAARLTALADPGTVLVDSMTAAALEHDERFVLVPQKAE 400
pfam00211     90 EEVNVghaNGLRVRIgihtgpvvagvigARRPRyDVWGDTVNVASRMESTGVPGKIHVSEETYRLLKGEESFQFRLEPRG 169

                        170
                 ....*....|....*
gi 116669846 401 E--VRGFGEIHPVLL 413
pfam00211    170 EvpVKGKGPMETYFL 184

cl00925

141019

Guanylate_cyc

Adenylate and Guanylate cyclase catalytic domain

-1

32297

COG2114

CyaA

Adenylate cyclase, family 3 (some proteins contain HAMP domain) [Signal transduction mechanisms]

Adenylate cyclase, family 3 (some proteins contain HAMP domain) [Signal transduction...

false

227

3e-12

68.28

89.43

5,214,3,99,313,109,20,333,130,21,354,154,33,388,187,19

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116669846 215 LVYSWRRQLNAGVQRLAVRAEAGLQASEEGREGDEDDAPLPLARAVGFADLVSYTSLSRRMNEKTLAQLVQRFENKCAEI 294
COG2114        4 VLNLLAKEAKVAAAGLRSDLVLRLYLARVVGRLLARGGAGDRRVTLLFADIVGSTELSESLGDEALVELLNLYFDAVAEV 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116669846 295 ISVGGGRLVKTVGDEVLYI-------AETPAAGAEISLALSQAFTE-DEILPEARVAMVWGRILSRLG---DIYGPTVNL 363
COG2114       84 VARHGGRVVKFIGDGFLAVfgrpsplEDAVACALDLQLALRNPLARlRRESLRVRIGIHTGEVVVGNTggyTVVGSAVNQ 163

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 116669846 364 AARLTALADPGTVLVDSMTAAALEhDERFVLVPQKAEEVRGFGE 407
COG2114      164 AARLESLAKPGQVLLSEATYDLVR-DLVDLFSGLGSHRLKGLAR 206

cl00925

141019

Guanylate_cyc

Adenylate and Guanylate cyclase catalytic domain

-1

128359

smart00044

CYCc

Adenylyl- / guanylyl cyclase, catalytic domain

false

194

3e-08

54.98

80.93

8,258,37,18,276,59,12,292,71,17,309,90,22,334,112,6,340,132,14,354,153,33,387,187,7

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116669846 259 AVGFADLVSYTSLSRRMN----EKTLAQLVQRFEnkcaEIISVGGGRLVKTVGDE--VLYIAETPAAGAEISLALSQAFt 332
smart00044    38 TILFTDIVGFTTLSSEATpeqvVTLLNDLYSRFD----RIIDRHGGYKVKTIGDAymVVSGLPTEALVDHAELAADEAL- 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116669846 333 edEILPEA--------------RVAMVWGRILSRLG-------DIYGPTVNLAARLTALADPGTVLVDSMTAAALE-HDE 390
smart00044   113 --DMVESLktvlsqhrgnglrvRIGIHTGPVVAGVVgitmpryCLFGDTVNLASRMESVGDPGQILVSEETYSLLRrRGP 190


                 ....
gi 116669846 391 RFVL 394
smart00044   191 RFVF 194

cl00925

141019

Guanylate_cyc

Adenylate and Guanylate cyclase catalytic domain

-1