NCBI Conserved Domain Search

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Conserved domains on [gi\|116626875\|ref\|YP_829031.1\|]
TPR repeat-containing protein [Solibacter usitatus Ellin6076]

Graphical summary show options »	Show site features Horizontal zoom: ×	?



List of domain hits		?

References:

Marchler-Bauer A et al. (2009), "CDD: specific functional annotation with the Conserved Domain Database.", Nucleic Acids Res.37(D)205-10.

Marchler-Bauer A, Bryant SH (2004), "CD-Search: protein domain annotations on the fly.", Nucleic Acids Res.32(W)327-331.

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of the residues that compose this conserved feature have been mapped to the query sequence.

Click on the triangle to view details about the feature, including a multiple sequence alignment of your query sequence and the protein sequences used to curate the domain model, where hash marks (#) above the aligned sequences show the location of the conserved feature residues.

The thumbnail image, if present, provides an approximate view of the feature's location in 3 dimensions. Click on the triangle for interactive 3D structure viewing options.

This image shows a graphical summary of conserved domains identified on the query sequence. The Show Concise/Full Display button at the top of the page can be used to select the desired level of detail: only top scoring hits (labeled illustration) or all hits (labeled illustration).
Domains are color coded according to superfamilies to which they have been assigned. Hits with scores that pass a domain-specific threshold (specific hits) are drawn in bright colors. Others (non-specific hits) and superfamily placeholders are drawn in pastel colors.
if a domain or superfamily has been annotated with functional sites (conserved features), they are mapped to the query sequence and indicated through sets of triangles with the same color and shade of the domain or superfamily that provides the annotation.
Mouse over the colored bars or triangles to see descriptions of the domains and features. click on the bars or triangles to view your query sequence embedded in a multiple sequence alignment of the proteins used to develop the corresponding domain model.

The table lists conserved domains identified on the query sequence. Click on the plus sign (+) on the left to display full descriptions, alignments, and scores. Click on the PssmId to view the multiple sequence alignment of the proteins used to develop the corresponding domain model.

To view your query sequence embedded in that multiple sequence alignment, click on the colored bars in the Graphical Summary portion of the search results page, or click on the triangles, if present, that represent functional sites (conserved features) mapped to the query sequence.

Concise Display shows only the best scoring domain model, in each hit category listed below except non-specific hits, for each region on the query sequence. (labeled illustration)
Full Display shows all domain models, in each hit category below, that meet or exceed the RPS-BLAST threshold for statistical significance. (labeled illustration)
Four types of hits can be shown, as available, for each region on the query sequence:

specific hits meet or exceed a domain-specific e-value threshold (illustrated example) and represent a very high confidence that the query sequence belongs to the same protein family as the sequences use to create the domain model
non-specific hits meet or exceed the RPS-BLAST threshold for statistical significance (default E-value cutoff of 0.01, or an E-value selected by user via the advanced search options)
the domain superfamily to which the specific and non-specific hits belong
multi-domain models that were computationally detected and are likely to contain multiple single domains

The CD-Search help document provides more detail about the tool and its features.

Retrieve proteins that contain one or more of the domains present in the query sequence, using the Conserved Domain Architecture Retrieval Tool (CDART).

Modify your query to search against a different database and/or use advanced search options

29151

cd00189

TPR

Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[...

true

100

9e-10

60.86

89.00

1,480,0,89

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875 481 EAIRGAASLANNLGHLDEAVALGRRAIEIDPLDSVTYNNLGIVLYRAGRPEEAVAEFRRALEITPERERTHSMIGRVYLV 560
cd00189        1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK 80


                 ....*....
gi 116626875 561 QSRPQEALA 569
cd00189       81 LGKYEEALE 89

cl02429

141413

TPR

Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[...

29151

cd00189

TPR

Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[...

false

true

false

100

9e-09

57.40

86.00

1,460,14,86

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875 461 DWAGANASFQRARELEPGNAEAIRGAASLANNLGHLDEAVALGRRAIEIDPLDSVTYNNLGIVLYRAGRPEEAVAEFRRA 540
cd00189       15 DYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKA 94


                 ....*.
gi 116626875 541 LEITPE 546
cd00189       95 LELDPN 100

cl02429

141413

TPR

Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[...

-1

35175

COG5616

Predicted integral membrane protein [Function unknown]

true

false

152

2e-32

135.77

81.58

1,224,26,124

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875 225 IVVLPFVDNSPGKNQEYFSDGLTEELLNALARIPGLRVTGRTSSFQFKGKTEDYGEIGRKLSVANILEGSVGQQGNRTKV 304
COG5616       27 IAVLPFVNLSGDPEQEYFADGLTEDIITDLSRFRELFVIARNSSFTYKGKAVDVREVGEELGVRYVLEGSVRRAGGRVRV 106

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 116626875 305 TARLIQASDGFQIWSATFDREVDNIFAVQEQIASAVAGALKVRL 348
COG5616      107 TAQLVDASSGGHLWAERYDRDLDDIFALQDEVTERIVSAIAGPY 150

COG5616

35175

COG5616

Predicted integral membrane protein [Function unknown]

-1

32297

COG2114

CyaA

Adenylate cyclase, family 3 (some proteins contain HAMP domain) [Signal transduction mechanisms]

Adenylate cyclase, family 3 (some proteins contain HAMP domain) [Signal transduction...

true

false

227

7e-07

51.33

67.84

7,3,48,46,50,94,5,56,99,7,63,109,17,80,132,16,98,148,45,146,193,9

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875   4 VLFTDLVGYSLLPMDRQKEYLGELQRIVQGSPRFQAAEAAGEIISLpTGDGMaLAFFGDP---TAAAQCALEVAASLKSR 80
COG2114       49 LLFADIVGSTELSESLGDEALVELLNLYFDAVAEVVARHGGRVVKF-IGDGF-LAVFGRPsplEDAVACALDLQLALRNP 126

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875  81 ------PHLQLRMGIHSGPVYRvaDVNANANVAGGGINMAQRVMDCGDAGHILVSKTMADVLLQFSQWApylADLGECTV 154
COG2114      127 larlrrESLRVRIGIHTGEVVV--GNTGGYTVVGSAVNQAARLESLAKPGQVLLSEATYDLVRDLVDLF---SGLGSHRL 201


                 .
gi 116626875 155 K 155
COG2114      202 K 202

cl00925

141019

Guanylate_cyc

Adenylate and Guanylate cyclase catalytic domain

-1

128359

smart00044

CYCc

Adenylyl- / guanylyl cyclase, catalytic domain

false

194

9e-07

50.75

76.80

10,3,38,12,15,55,2,17,60,14,39,74,10,50,84,5,56,89,10,66,107,14,80,123,2,82,129,14,96,145,42

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875   4 VLFTDLVGYSLL-----PM---DRQKEYLGELQRIVqgsprfqaAEAAGEIISLpTGDGMaLAFFGDPTAA--------A 67
smart00044    39 ILFTDIVGFTTLsseatPEqvvTLLNDLYSRFDRII--------DRHGGYKVKT-IGDAY-MVVSGLPTEAlvdhaelaA 108

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 116626875  68 QCALEVAASLKSR--PH----LQLRMGIHSGPVYR--VADVNANANVAGGGINMAQRVMDCGDAGHILVSKTMADVLLQ 138
smart00044   109 DEALDMVESLKTVlsQHrgngLRVRIGIHTGPVVAgvVGITMPRYCLFGDTVNLASRMESVGDPGQILVSEETYSLLRR 187

cl00925

141019

Guanylate_cyc

Adenylate and Guanylate cyclase catalytic domain

-1

109276

pfam00211

Guanylate_cyc

Adenylate and Guanylate cyclase catalytic domain

false

185

7e-06

47.63

88.65

11,3,10,12,15,24,6,21,32,10,35,42,13,50,55,1,51,57,3,54,61,3,59,64,7,66,78,14,80,97,15,95,114,60

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875   4 VLFTDLVGYSLL--PMDRQK--EYLGELQRIVqgspRFQAAEAAGEIISlpT-GDG-MALafFGDPTAA-------AQCA 70
pfam00211     11 ILFADIVGFTALssRHSPEElvRLLNDLYTRF----DELLDKHGVYKVK--TiGDAyMAA--SGLPPAAahhaallADMA 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875  71 LEVAASLKSR-----PHLQLRMGIHSGPVY--RVADVNANANVAGGGINMAQRVMDCGDAGHILVSKTMADVLLQFSQWA 143
pfam00211     83 LDMVETIEEVnvghaNGLRVRIGIHTGPVVagVIGARRPRYDVWGDTVNVASRMESTGVPGKIHVSEETYRLLKGEESFQ 162

                        170
                 ....*....|..
gi 116626875 144 PYLADLGECTVK 155
pfam00211    163 FRLEPRGEVPVK 174

cl00925

141019

Guanylate_cyc

Adenylate and Guanylate cyclase catalytic domain

-1

29151

cd00189

TPR

Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[...

true

100

4e-05

45.46

88.00

4,379,11,37,418,48,2,427,50,29,457,79,20

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875 380 DKQNLEKAAAYFDDAIRLDPGYAPAWAELSFTRTSQEtlRYvpaeegnRKAEEAVQRALALDPNLAQAHVALGSIQMtRR 459
cd00189       12 KLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLG--KY-------EEALEDYEKALELDPDNAKAYYNLGLAYY-KL 81

                         90
                 ....*....|....*...
gi 116626875 460 WDWAGANASFQRARELEP 477
cd00189       82 GKYEEALEAYEKALELDP 99

cl02429

141413

TPR

Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[...

131963

TIGR02917

PEP_TPR_lipo

putative PEP-CTERM system TPR-repeat lipoprotein

false

true

false

899

8e-15

77.43

33.93

9,369,367,11,383,378,32,415,417,12,427,447,32,460,479,109,569,591,14,583,606,30,613,638,24,638,662,10

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875 370 LMGRYFRRQRDkqnLEKAAAYFDDAIRLDPGYAPAWAELSFTRTSQ-------ETLRYVPAEEGN--------------- 427
TIGR02917    368 LLGEAYLALGD---FEKAAEYLAKATELDPENAAARTQLGISKLSQgdpseaiADLETAAQLDPElgradlllilsylrs 444

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875 428 ---RKAEEAVQRALALDPNLAQAHVALGSIQMTRRwDWAGANASFQRARELEPGNAEAIRGAASLANNLGHLDEAVALGR 504
TIGR02917    445 gqfDKALAAAKKLEKKQPDNASLHNLLGAIYLGKG-DLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFE 523

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875 505 RAIEIDPLDSVTYNNLGIVLYRAGRPEEAVAEFRRALEITPERERTHSMIGRVYLVQSRPQEALA---EMLLEKRPAFRL 581
TIGR02917    524 KVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAilnEAADAAPDSPEA 603

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875 582 FG-LGLAYHALGRKQESDASLAELIQKFPTGYP--YQIAELYAFRGENEKAFEWLERAYaEPDPGLREMK 648
TIGR02917    604 WLmLGRAQLAAGDLNKAVSSFKKLLALQPDSALalLLLADAYAVMKNYAKAITSLKRAL-ELKPDNTEAQ 672

-1

131963

TIGR02917

PEP_TPR_lipo

putative PEP-CTERM system TPR-repeat lipoprotein

false

true

false

899

6e-13

71.27

30.37

9,356,558,24,383,582,36,428,618,31,460,649,86,547,735,22,569,759,8,577,769,37,614,808,7,622,815,16

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875 357 AARSTNAEAYKAYLMGRYFRRQRDkqnLEKAAAYFDDAIRLDPGYAPAWAELSFTRTSQETLRyvpaeegnrKAEEAVQR 436
TIGR02917    559 AAELNPQEIEPALALAQYYLGKGQ---LKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLN---------KAVSSFKK 626

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875 437 ALALDPNLAQAHVALGSIQMTRRwDWAGANASFQRARELEPGNAEAIRGAASLANNLGHLDEAVALGRRAIEIDPLDSVT 516
TIGR02917    627 LLALQPDSALALLLLADAYAVMK-NYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALG 705

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875 517 YNNLGIVLYRAGRPEEAVAEFRRALEITPErERTHSMIGRVYLVQSRPQEALA--EMLLEKRP--AFRLFGLGLAYHALG 592
TIGR02917    706 FELEGDLYLRQKDYPAAIQAYRKALKRAPS-SQNAIKLHRALLASGNTAEAVKtlEAWLKTHPndAVLRTALAELYLAQK 784

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*...
gi 116626875 593 RKQESDASLAELIQKFPTGYPY--QIAELYAfRGENEKAFEWLERAYA 638
TIGR02917    785 DYDKAIKHYRTVVKKAPDNAVVlnNLAWLYL-ELKDPRALEYAEKALK 831

-1

131963

TIGR02917

PEP_TPR_lipo

putative PEP-CTERM system TPR-repeat lipoprotein

false

true

false

899

3e-11

65.49

32.15

9,377,202,38,415,250,4,419,255,9,428,278,19,448,297,124,572,423,19,592,442,10,603,452,12,615,470,21

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875 378 QRDKQNLEKAAAYFDDAIRLDPGYAPAWAELSFTRTSQ----------ETLR-YVPAEEGNR--------------KAEE 432
TIGR02917    203 LLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAgefeeaekhaDALLkKAPNSPLAHylkalvdfqkknyeDARE 282

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875 433 AVQRALALDPNLAQAhVALGSIQMTRRWDWAGANASFQRARELEPGNAEAIRGAASLANNLGHLDEAVALGRRAIEIDPL 512
TIGR02917    283 TLQDALKSAPEYLPA-LLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPD 361

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875 513 DSVTYNNLGIVLYRAGRPEEAVAEFRRALEITPERERTHSMIGRVYLVQSRPQEALAEML--LEKRPAFRLFGLGLAYHA 590
TIGR02917    362 DPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLEtaAQLDPELGRADLLLILSY 441

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 116626875 591 LgRKQESDASLAeLIQKFPTGYPYQ------IAELYAFRGENEKAFEWLERA 636
TIGR02917    442 L-RSGQFDKALA-AAKKLEKKQPDNaslhnlLGAIYLGKGDLAKAREAFEKA 491

-1

131963

TIGR02917

PEP_TPR_lipo

putative PEP-CTERM system TPR-repeat lipoprotein

false

true

false

899

2e-09

59.71

31.15

7,378,509,26,404,554,13,417,573,42,460,615,111,571,728,6,577,735,36,613,773,16

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875 379 RDKQNLEKAAAYFDDAIRLDPGYAPA-------------------WAELSFTRTSQET------LRYVPAEEGNRKAEEA 433
TIGR02917    510 IQEGNPDDAIQRFEKVLTIDPKNLRAilalaglylrtgneeeavaWLEKAAELNPQEIepalalAQYYLGKGQLKKALAI 589

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875 434 VQRALALDPNLAQAHVALGSIQMTRRwDWAGANASFQRARELEPGNAEAIRGAASLANNLGHLDEAVALGRRAIEIDPLD 513
TIGR02917    590 LNEAADAAPDSPEAWLMLGRAQLAAG-DLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDN 668

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875 514 SVTYNNLGIVLYRAGRPEEAVAEFRRALEITPERERTHSMIGRVYLVQSRPQEALAEM--LLEKRP-AFRLFGLGLAYHA 590
TIGR02917    669 TEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYrkALKRAPsSQNAIKLHRALLA 748

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|.
gi 116626875 591 LGRKQESDASLAELIQKFPTGYP--YQIAELYAFRGENEKA 629
TIGR02917    749 SGNTAEAVKTLEAWLKTHPNDAVlrTALAELYLAQKDYDKA 789

-1

131573

TIGR02521

type_IV_pilW

type IV pilus biogenesis/stability protein PilW

false

true

false

234

4e-09

58.50

51.71

4,427,47,32,460,79,48,509,127,3,512,133,35

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875 428 RKAEEAVQRALALDPNLAQAHVALGSIQMTRRwDWAGANASFQRARELEPGNAEAIRGAASLANNLGHLDEAVALGRRAI 507
TIGR02521     48 EVAKENLDKALEHDPDDYLAYLALALYYQQLG-ELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAI 126

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 116626875 508 EiDPL---DSVTYNNLGIVLYRAGRPEEAVAEFRRALEITPER 547
TIGR02521    127 E-DPLypqPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR 168

-1

131963

TIGR02917

PEP_TPR_lipo

putative PEP-CTERM system TPR-repeat lipoprotein

false

true

false

899

7e-09

57.79

32.04

14,361,54,4,367,58,16,383,78,22,408,100,30,443,130,9,460,139,108,568,249,9,577,262,7,585,269,4,592,273,7,599,282,14,613,297,9,622,307,13,635,322,20

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875 362 NAEAykAYLMGRYFRRQRDKQN----LEKAAAYFDDAIRLDPGYAPAWaelSFTRTSQETLRYVPAEEGNRKAEEAVQRA 437
TIGR02917     55 DAEA--RFLLGKIYLALGDYAAaekeLRKALSLGYPKNQVLPLLARAY---LLQGKFQQVLDELPGKTLLDDEGAAELLA 129

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875 438 LaldpnLAQAHVALGsiqmtrrwDWAGANASFQRARELEPGNAEAIRGAASLANNLGHLDEAVALGRRAIEIDPLDSVTY 517
TIGR02917    130 L-----RGLAYLGLG--------QLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDAL 196

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875 518 NNLGIVLYRAGRPEEAVAEFRRALEITPERERTHSMIGRVYLVQSRPQEAL--AEMLLEKRP----AFRLFGLgLAYHal 591
TIGR02917    197 LLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEkhADALLKKAPnsplAHYLKAL-VDFQ-- 273

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875 592 gRKQESDA--SLAELIQKFPTGYP-YQIAELYAF-RGENEKAFEWLER--AYAEPDPGLREMKAEPLLNS 655
TIGR02917    274 -KKNYEDAreTLQDALKSAPEYLPaLLLAGASEYqLGNLEQAYQYLNQilKYAPNSHQARRLLASIQLRL 342

-1

131963

TIGR02917

PEP_TPR_lipo

putative PEP-CTERM system TPR-repeat lipoprotein

false

true

false

899

4e-08

55.47

24.47

7,380,477,28,417,505,39,457,544,22,482,566,11,493,580,79,572,661,27,599,689,8

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875 381 KQNLEKAAAYFDDAIRLDPGYAPAWAELsftrtsqetLRYVPAEEGNRKAEEAVQRALALDPNLAQAHVALGSIQMtRRW 460
TIGR02917    478 KGDLAKAREAFEKALSIEPDFFPAAANL---------ARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYL-RTG 547

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875 461 DWAGANASFQRARELEPGNaeaIRGAASLANNL---GHLDEAVALGRRAIEIDPLDSVTYNNLGIVLYRAGRPEEAVAEF 537
TIGR02917    548 NEEEAVAWLEKAAELNPQE---IEPALALAQYYlgkGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSF 624

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 116626875 538 RRALEITPERERTHSMIGRVYLVQSRPQEALAEML--LEKRPAFRLFGLGLAYHALGRKQESDA-SLAELIQK 607
TIGR02917    625 KKLLALQPDSALALLLLADAYAVMKNYAKAITSLKraLELKPDNTEAQIGLAQLLLAAKRTESAkKIAKSLQK 697

-1

34615

COG5010

TadD

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and...

false

true

false

257

5e-08

55.01

52.14

2,432,87,24,457,111,110

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875 433 AVQRALALDPNLAQAHVALGSIQMtRRWDWAGANASFQRARELEPGNAEAIRGAASLANNLGHLDEAVALGRRAIEIDPL 512
COG5010       88 VLQKSAIAYPKDRELLAAQGKNQI-RNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN 166

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 116626875 513 DSVTYNNLGIVLYRAGRPEEAVAEFRRALEITPERERTHSMIGRVYLVQSRPQEA 567
COG5010      167 EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREA 221

-1

32877

COG3063

PilF

Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular...

false

true

false

250

9e-08

54.20

70.40

5,444,34,12,457,46,87,544,135,25,569,162,32,603,194,16

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875 445 AQAHVALGSIQMtRRWDWAGANASFQRARELEPGNAEAIRGAASLANNLGHLDEAVALGRRAIEIDPLDSVTYNNLGIVL 524
COG3063       35 AKARLQLALGYL-QQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFL 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875 525 YRAGRPEEAVAEFRRALEIT--PERERTHSMIGRVYLVQSRPQEALA--EMLLEKRPAFRLFGLGLAYHALGRKQESDAS 600
COG3063      114 CAQGRPEEAMQQFERALADPayGEPSDTLENLGLCALKAGQFDQAEEylKRALELDPQFPPALLELARLHYKAGDYAPAR 193

                        170
                 ....*....|....*....
gi 116626875 601 LaeLIQKFPTGYPYQIAEL 619
COG3063      194 L--YLERYQQRGGAQAESL 210

-1

138580

PRK11447

cellulose synthase subunit BcsC; Provisional

false

true

false

1158

1e-07

53.99

14.85

6,402,268,3,411,271,16,428,287,28,457,315,35,492,364,70,563,434,6

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875  403 PAWaelsftRTSQETLRYVPAEEGNrKAEEAVQRALALDPNLAQAHVALGSIQMtRRWDWAGANASFQRARELEPGNAEA 482
PRK11447      269 PAF------RARQQGLAAVDSGMGG-KAIAELQQAVRANPKDSEALGALGQAYS-QRGDRARAVAQFEKALALDPHSSNR 340

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875  483 IRGAASLANN--------------LGHLDEAVALGRRAIEIDPLDSVTYNNLGIVLYRAGRPEEAVAEFRRALEITPERE 548
PRK11447      341 DKWESLLKVNrywlliqqgdaalkANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQTLRMDSGNT 420

                         170       180
                  ....*....|....*....|.
gi 116626875  549 RTHSMIGRVYLVQSrPQEALA 569
PRK11447      421 NAVRGLANIYRQQS-PEKALA 440

-1

130063

TIGR00990

3a0801s09

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane...

false

true

false

615

1e-07

53.46

22.44

2,429,349,25,455,374,113

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875 430 AEEAVQRALALDPNLAQAHVALGSIqMTRRWDWAGANASFQRARELEPGNAEAIRGAASLANNLGHLDEAVALGRRAIEI 509
TIGR00990    350 ALADLSKSIELDPRVTQSYIKRASM-NLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL 428

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 116626875 510 DPLDSVTYNNLGIVLYRAGRPEEAVAEFRRALEITPERERTHSMIGRVYLVQSRPQEAL 568
TIGR00990    429 DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAI 487

-1

30805

COG0457

NrfG

FOG: TPR repeat [General function prediction only]

false

true

false

291

4e-07

51.90

84.54

3,346,30,133,479,166,32,511,199,77

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875 347 RLLAGKNTGPAARSTNAEAYKAYLMGRYFRRQRDKQNLEKAAAYFDDAIRLDPGYAPAWAELSFTRTSQETLRYVPAEEG 426
COG0457       31 ALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGK 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875 427 NRKAEEAVQRALALDPNLAQAHVALGSIQMTRRWDWAGANASFQRARELEPGN---AEAIRGAASLANNLGHLDEAVALG 503
COG0457      111 YEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELnelAEALLALGALLEALGRYEEALELL 190

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875 504 RRAIEIDP-LDSVTYNNLGIVLYRAGRPEEAVAEFRRALEITPERERTHSMIGRVYLVQSRPQEALAEMLLEKRPAFRLF 582
COG0457      191 EKALKLNPdDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPDLY 270


                 ....*.
gi 116626875 583 GLGLAY 588
COG0457      271 NLGLAL 276

-1

131963

TIGR02917

PEP_TPR_lipo

putative PEP-CTERM system TPR-repeat lipoprotein

false

true

false

899

4e-07

52.01

19.69

5,382,717,17,412,734,25,437,762,22,460,784,35,496,819,75

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875 383 NLEKAAAYFDDAIRLDPgyapawaelsftrTSQETLRYVPAEEGNRKAEEAVQRA---LALDPNLAQAHVALGSIQMTRR 459
TIGR02917    718 DYPAAIQAYRKALKRAP-------------SSQNAIKLHRALLASGNTAEAVKTLeawLKTHPNDAVLRTALAELYLAQK 784

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875 460 wDWAGANASFQRARELEPGNAEAIRGAASLANNLGHlDEAVALGRRAIEIDPLDSVTYNNLGIVLYRAGRPEEAVAEFRR 539
TIGR02917    785 -DYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRK 862

                        170       180       190
                 ....*....|....*....|....*....|..
gi 116626875 540 ALEITPERERTHSMIGRVYLVQSRPQEALAEM 571
TIGR02917    863 AVNIAPEAAAIRYHLALALLATGRKAEARKEL 894

-1

131573

TIGR02521

type_IV_pilW

type IV pilus biogenesis/stability protein PilW

false

true

false

234

5e-07

51.57

75.21

5,444,30,8,453,38,89,542,129,27,569,158,32,603,190,16

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875 445 AQAHVALGsIQMTRRWDWAGANASFQRARELEPGNAEAIRGAASLANNLGHLDEAVALGRRAIEIDPLDSVTYNNLGIVL 524
TIGR02521     31 AKIRVQLA-LGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875 525 YRAGRPEEAVAEFRRALE--ITPERERTHSMIGRVYLVQSRPQEALA--EMLLEKRPAFRLFGLGLAYHALGRKQESDAS 600
TIGR02521    110 CQQGKYEQAMQQFEQAIEdpLYPQPARSLENAGLCALKAGDFDKAEKylTRALQIDPQRPESLLELAELYYLRGQYKDAR 189

                        170
                 ....*....|....*....
gi 116626875 601 LaeLIQKFPTGYPYQIAEL 619
TIGR02521    190 A--YLERYQQTYNQTAESL 206

-1

138914

PRK12370

invasion protein regulator; Provisional

false

true

false

553

2e-06

49.85

43.76

7,290,185,21,312,206,4,316,211,12,328,224,10,343,234,10,353,246,102,456,348,79

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875 291 LEGSVGQQGNRTKVTARLIQAsDGFQ-IWSATFDREVDN-IFAVQEQIASavagaLKVRLLAGKN--TGPAARSTNAEAY 366
PRK12370     186 ISGQMIPDGNDNIVQIEIVRV-KGYHlLHQESIKLIEHQpASLLQNKIAN-----LLLRCIPGLRwdTKQISELNSIDST 259

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875 367 KAYLMGRYFRRQRDKQNLEKAAAYFDDAIRLDPGYAPAWAELSFTRTSQETLRYVPAEEGNRKAEEAVQRALALDPNLAQ 446
PRK12370     260 MVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQ 339

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875 447 AHVALGSIQmTRRWDWAGANASFQRARELEPGNAEAIRGAASLANNLGHLDEAVALGRRAIEIDPLDSVTYNNLGIVLYR 526
PRK12370     340 ALGLLGLIN-TIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYY 418


                 ....*....
gi 116626875 527 AGRPEEAVA 535
PRK12370     419 HTGIDDAIR 427

-1

34615

COG5010

TadD

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and...

false

true

false

257

4e-06

48.85

56.03

2,426,48,41,469,89,103

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875 427 NRKAEEAVQRALALDPNLAQAHVALGSIQMTRRWDWAGANAsfQRARELEPGNAEAIRGAASLANNLGHLDEAVALGRRA 506
COG5010       49 TQGAAAALGAAVLRNPEDLSIAKLATALYLRGDADSSLAVL--QKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKA 126

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 116626875 507 IEIDPLDSVTYNNLGIVLYRAGRPEEAVAEFRRALEITPERERTHSMIGRVYLVQSRPQEALAEML 572
COG5010      127 ARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLL 192

-1

138580

PRK11447

cellulose synthase subunit BcsC; Provisional

false

true

false

1158

8e-06

47.44

19.86

12,356,297,12,370,309,11,384,320,16,400,338,8,414,346,9,423,356,4,427,368,32,460,400,27,487,458,4,491,473,23,514,497,3,518,500,27

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875  357 AARSTNAEAYKAylMGRYFRRQRDKqnlEKAAAYFDDAIRLDPG--YAPAWAELsftrtsQETLRYVPA-EEGN------ 427
PRK11447      298 RANPKDSEALGA--LGQAYSQRGDR---ARAVAQFEKALALDPHssNRDKWESL------LKVNRYWLLiQQGDaalkan 366

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875  428 --RKAEEAVQRALALDPNLAQAHVALGSIQMTRRwDWAGANASFQRARELEPGNAEAIRGAA------------------ 487
PRK11447      367 nlAQAERLYQQARQVDNTDSYAVLGLGDVAMARK-DYAAAERYYQQTLRMDSGNTNAVRGLAniyrqqspekalafiasl 445

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875  488 -------------SLAN-----------NLGHLDEAVALGRRAIEIDPLDS-VTYnNLGIVLYRAGRPEEAVAEFRRALE 542
PRK11447      446 sasqrrsiddierSLQNdrlaqqaealeNQGKWAQAAELQRQRLALDPGSVwITY-RLAQDLWQAGQRSQADALMRRLAQ 524


                  ...
gi 116626875  543 ITP 545
PRK11447      525 QKP 527

-1

34615

COG5010

TadD

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and...

false

true

false

257

2e-05

46.15

66.15

4,463,50,18,482,68,70,582,138,32,614,172,48

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875 464 GANASFQRARELEPGNAEaIRGAASLANNLGHLDEAVALGRRAIEIDPLDSVTYNNLGIVLYRAGRPEEAVAEFRRALEI 543
COG5010       51 GAAAALGAAVLRNPEDLS-IAKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL 129

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875 544 TPERERTHSmigrvylvqsrpqealaemllekrpafrlfGLGLAYHALGRKQESDASLAELIQKFPTGYPY--QIAELYA 621
COG5010      130 APTDWEAWN------------------------------LLGAALDQLGRFDEARRAYRQALELAPNEPSIanNLGMSLL 179

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 116626875 622 FRGENEKAFEWLERAYAEPDPGLREMKAEPLLNSLRRDPRY 662
COG5010      180 LRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFRE 220

-1

138753

PRK11788

hypothetical protein; Provisional

true

false

389

3e-05

45.97

33.16

6,525,191,44,569,237,10,581,247,5,586,257,28,614,286,19,643,305,15

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875 526 RAGRPEEAVAEFRRALEITPERERTHSMIGRVYLVQSRPQEALA--EMLLEKRPAFrlFGLGL-----AYHALGRKQESD 598
PRK11788     192 ARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEalERVEEQDPEY--LPEVLpklmeCYQALGDEAEGL 269

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 116626875 599 ASLAELIQKFPTGYPY-QIAELYAFRGENEKAFEWLerayaepdpgLREMKAEPLLNSLRR 658
PRK11788     270 EFLRRAVEEYPGADLLlALAQLLEEREGPEAAQALL----------REQLRRHPSLRGFHR 320

-1

131963

TIGR02917

PEP_TPR_lipo

putative PEP-CTERM system TPR-repeat lipoprotein

false

true

false

899

3e-05

45.84

23.47

6,436,47,20,457,67,18,475,120,6,481,128,8,491,136,79,570,219,39

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875 437 ALALDPNLAQAHVALGSIQMtRRWDWAGANASFQRAREL-----------------------------------EPGNAE 481
TIGR02917     48 ALQKDPNDAEARFLLGKIYL-ALGDYAAAEKELRKALSLgypknqvlpllarayllqgkfqqvldelpgktlldDEGAAE 126

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875 482 --AIRGAASLanNLGHLDEAVALGRRAIEIDPLDSVTYNNLGIVLYRAGRPEEAVAEFRRALEITPERERTHSMIGRVYL 559
TIGR02917    127 llALRGLAYL--GLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLL 204

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 116626875 560 VQSRPQEALAE----MLLEKRPAFRLFGLGLAYHALGRKQESDASLAELIQKFP 609
TIGR02917    205 SLGNIELALAAyrkaIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAP 258

-1

130063

TIGR00990

3a0801s09

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane...

false

true

false

615

8e-05

44.21

27.64

5,422,305,16,438,324,21,460,345,87,577,432,32,614,464,11

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875 423 AEEGNRKAEEAVQRAL---ALDPNLAQAHVALGSIQMTRRwDWAGANASFQRARELEPGNAEAIRGAASLANNLGHLDEA 499
TIGR00990    306 ADESYEEAARAFEKALdlgKLGEKEAIALNLRGTFKCLKG-KHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKA 384

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875 500 VALGRRAIEIDPLDSVTYNNLGIVLYRAGRPEEAVAEFRRALEITPERerthsmigrvylvqsrpqealaemllekrpAF 579
TIGR00990    385 EEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF------------------------------IF 434

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 116626875 580 RLFGLGLAYHALGRKQESDASLAELIQKFPtgypyQIAELYAFRGE 625
TIGR00990    435 SHIQLGVTQYKEGSIASSMATFRRCKKNFP-----EAPDVYNYYGE 475

-1

34615

COG5010

TadD

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and...

false

true

false

257

1e-04

43.45

42.80

2,422,111,34,457,145,76

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875 423 AEEGNRKAEEAVQRALALDPNLAQAHVALGSIQMtRRWDWAGANASFQRARELEPGNAEAIRGAASLANNLGHLDEAVAL 502
COG5010      112 RNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALD-QLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETL 190

                         90       100       110
                 ....*....|....*....|....*....|.
gi 116626875 503 GRRAIEIDPLDSVTYNNLGIVLYRAGRPEEA 533
COG5010      191 LLPAYLSPAADSRVRQNLALVVGLQGDFREA 221

-1

34394

COG4783

Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

false

true

false

484

2e-04

43.41

38.43

7,462,288,49,512,337,8,520,346,51,571,399,12,583,413,18,616,431,27,643,459,15

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875 463 AGANASFQRARELEPGNAEAIRGAASLANNLGHLDEAVALGRRAIEIDPlDSVTYNNL-GIVLYRAGRPEEAVAEFRRAL 541
COG4783      289 PNQQAADLLAKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQP-DNPYYLELaGDILLEANKAKEAIERLKKAL 367

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875 542 EITPERERTHSMIGRVYLVQSRPQEALAEM--LLEKRPAFRLFG--LGLAYHALGRKQESDASLaeliqkfptgypyqiA 617
COG4783      368 ALDPNSPLLQLNLAQALLKGGKPQEAIRILnrYLFNDPEDPNGWdlLAQAYAELGNRAEALLAR---------------A 432

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 116626875 618 ELYAFRGENEKAFEWLERAYAEPDPG-LREMKAEPLLNSLRR 658
COG4783      433 EGYALAGRLEQAIIFLMRASQQVKLGfPDWARADARIDQLRQ 474

-1

137657

PRK10049

pgaA

outer membrane protein PgaA; Provisional

false

true

false

818

2e-04

42.85

10.76

3,457,112,4,463,116,48,512,164,36

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875 458 RRWDwaGANASFQRARELEPGNAEAIRGAASLANNLGHLDEAVALGRRAIEIDPlDSVTYNNLGIVLYRAGRPEEAVAEF 537
PRK10049     113 KQWQ--NSLTLWQKALSLEPQNKDYQSGQILTLADAGHYDEALVKAKQLVAGAP-DVANLLALAYIYRLAGRHYDALRAM 189

                         90
                 ....*....|.
gi 116626875 538 RRALEITPERE 548
PRK10049     190 TEALRRAPSSQ 200

-1

130063

TIGR00990

3a0801s09

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane...

false

true

false

615

2e-04

42.67

30.89

6,380,343,30,420,373,7,427,381,32,460,413,91,551,508,5,556,514,19

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875 381 KQNLEKAAAYFDDAIRLDPGYAPAWAELSFtrtsqetlryVPAEEGN-RKAEEAVQRALALDPNLAQAHVALGSIQMTRR 459
TIGR00990    344 KGKHLEALADLSKSIELDPRVTQSYIKRAS----------MNLELGDpDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKG 413

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875 460 wDWAGANASFQRARELEPGNAEAIRGAASLANNLGHLDEAVALGRRAIEIDPLDSVTYNNLGIVLYRAGRPEEAVAEFRR 539
TIGR00990    414 -EFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDT 492

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 116626875 540 ALEITPERERTH----SMIGR-VYLVQSRPQEALAEMLLEK 575
TIGR00990    493 AIELEKETKPMYmnvlPLINKaLALFQWKQDFIEAENLCEK 533

-1

34394

COG4783

Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

false

true

false

484

3e-04

42.25

29.34

3,432,293,19,452,312,109,561,424,11

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875 433 AVQRALALDPNLAQAHVALgSIQMTRRWDWAGANASFQRARELEPGNAEAIRGAASLANNLGHLDEAVALGRRAIEIDPL 512
COG4783      294 ADLLAKRSKRGGLAAQYGR-ALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN 372

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 116626875 513 DSVTYNNLGIVLYRAGRPEEAVAEFRRALEITPERERTHSMIGRVYLVQ---SRPQEALAEML 572
COG4783      373 SPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELgnrAEALLARAEGY 435

-1

32877

COG3063

PilF

Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular...

false

true

false

250

4e-04

41.88

88.80

8,353,22,16,369,40,9,382,49,28,419,77,24,478,101,32,510,135,37,547,177,40,588,217,27

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875 354 TGPAARSTNAEAYKAY--LMGRYFRRQrdkqNLEKAAAYFDDAIRLDPGYAPAWAELSFtrtsqetlrYVPAEEGNRKAE 431
COG3063       23 PAPSRQTDRNEAAKARlqLALGYLQQG----DYAQAKKNLEKALEHDPSYYLAHLVRAH---------YYQKLGENDLAD 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875 432 EAVQRALALDPNlaqahvalgsiqmtrrwdwaganasfqrarelepgNAEAIRGAASLANNLGHLDEAVALGRRAIEID- 510
COG3063       90 ESYRKALSLAPN-----------------------------------NGDVLNNYGAFLCAQGRPEEAMQQFERALADPa 134

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875 511 -PLDSVTYNNLGIVLYRAGRPEEAVAEFRRALEITPER-----ERTHSMIGRVYLVQSRPQEALAEMLLEKRPAFRLFGL 584
COG3063      135 yGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFppallELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGI 214

                        250       260       270
                 ....*....|....*....|....*....|.
gi 116626875 585 GLAyHALGRKQESDASLAELIQKFPTGYPYQ 615
COG3063      215 RIA-KRLGDRAAAQRYQAQLQRLFPYSEEYQ 244

-1

33959

COG4235

Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Cytochrome c biogenesis factor [Posttranslational modification, protein turnover,...

false

true

false

287

7e-04

41.09

53.66

5,421,132,35,457,167,31,488,200,9,497,210,49,546,263,23

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875 422 PAEEGNRKAEEAVQRALALDPNLAQAHVALGSIQMtRRWDWAGANASFQRARELEPGNAEAIRGAAS--LANNLGHLD-E 498
COG4235      133 PAEQEMEALIARLETHLQQNPGDAEGWDLLGRAYM-ALGRASDALLAYRNALRLAGDNPEILLGLAEalYYQAGQQMTaK 211

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 116626875 499 AVALGRRAIEIDPLDSVTYNNLGIVLYRAGRPEEAVAEFRRALEITPE----RERTHSMIGRVYLVQSRPQEALA 569
COG4235      212 ARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAddprRSLIERSIARALAQRSAQGPAAP 286

-1

131573

TIGR02521

type_IV_pilW

type IV pilus biogenesis/stability protein PilW

false

true

false

234

0.003

38.86

47.44

5,384,115,12,397,127,11,415,138,13,428,152,31,460,183,43

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875 385 EKAAAYFDDAIRlDPGYAPAWAELsftrtsqETLRYVPAEEGNR-KAEEAVQRALALDPNLAQAHVALGSIQMTRRwDWA 463
TIGR02521    116 EQAMQQFEQAIE-DPLYPQPARSL-------ENAGLCALKAGDFdKAEKYLTRALQIDPQRPESLLELAELYYLRG-QYK 186

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 116626875 464 GANASFQRARELEPGNAEAIRGAASLANNLGHLDEAVALG 503
TIGR02521    187 DARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYG 226

-1

138753

PRK11788

hypothetical protein; Provisional

false

true

false

389

0.005

38.27

29.05

5,428,197,28,457,225,22,479,248,37,521,285,6,527,295,15

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116626875 429 KAEEAVQRALALDPNLAQAHVALGSIQMtRRWDWAGANASFQRARELEPGN-AEAIRGAASLANNLGHLDEAVALGRRAI 507
PRK11788     198 AARALLKKALAADPQCVRASILLGDLAL-AQGDYAAAIEALERVEEQDPEYlPEVLPKLMECYQALGDEAEGLEFLRRAV 276

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 116626875 508 EIDPLDSVTynnlgIVLYRA----GRPEEAVAEFRRALE 542
PRK11788     277 EEYPGADLL-----LALAQLleerEGPEAAQALLREQLR 310

-1

TPR motif	0	10	12	true	29151	cd00189	TPR
binding surface	1	18	18	true	29151	cd00189	TPR
TPR motif	0	11	12	true	29151	cd00189	TPR
binding surface	1	12	18	true	29151	cd00189	TPR