NCBI Conserved Domain Search

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Conserved domains on [gi\|116623704\|ref\|YP_825860.1\|]
response regulator receiver modulated diguanylate cyclase [Solibacter usitatus Ellin6076]

Graphical summary show options »	Show site features Horizontal zoom: ×	?



List of domain hits		?

References:

Marchler-Bauer A et al. (2009), "CDD: specific functional annotation with the Conserved Domain Database.", Nucleic Acids Res.37(D)205-10.

Marchler-Bauer A, Bryant SH (2004), "CD-Search: protein domain annotations on the fly.", Nucleic Acids Res.32(W)327-331.

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of the residues that compose this conserved feature have been mapped to the query sequence.

Click on the triangle to view details about the feature, including a multiple sequence alignment of your query sequence and the protein sequences used to curate the domain model, where hash marks (#) above the aligned sequences show the location of the conserved feature residues.

The thumbnail image, if present, provides an approximate view of the feature's location in 3 dimensions. Click on the triangle for interactive 3D structure viewing options.

This image shows a graphical summary of conserved domains identified on the query sequence. The Show Concise/Full Display button at the top of the page can be used to select the desired level of detail: only top scoring hits (labeled illustration) or all hits (labeled illustration).
Domains are color coded according to superfamilies to which they have been assigned. Hits with scores that pass a domain-specific threshold (specific hits) are drawn in bright colors. Others (non-specific hits) and superfamily placeholders are drawn in pastel colors.
if a domain or superfamily has been annotated with functional sites (conserved features), they are mapped to the query sequence and indicated through sets of triangles with the same color and shade of the domain or superfamily that provides the annotation.
Mouse over the colored bars or triangles to see descriptions of the domains and features. click on the bars or triangles to view your query sequence embedded in a multiple sequence alignment of the proteins used to develop the corresponding domain model.

The table lists conserved domains identified on the query sequence. Click on the plus sign (+) on the left to display full descriptions, alignments, and scores. Click on the PssmId to view the multiple sequence alignment of the proteins used to develop the corresponding domain model.

To view your query sequence embedded in that multiple sequence alignment, click on the colored bars in the Graphical Summary portion of the search results page, or click on the triangles, if present, that represent functional sites (conserved features) mapped to the query sequence.

Concise Display shows only the best scoring domain model, in each hit category listed below except non-specific hits, for each region on the query sequence. (labeled illustration)
Full Display shows all domain models, in each hit category below, that meet or exceed the RPS-BLAST threshold for statistical significance. (labeled illustration)
Four types of hits can be shown, as available, for each region on the query sequence:

specific hits meet or exceed a domain-specific e-value threshold (illustrated example) and represent a very high confidence that the query sequence belongs to the same protein family as the sequences use to create the domain model
non-specific hits meet or exceed the RPS-BLAST threshold for statistical significance (default E-value cutoff of 0.01, or an E-value selected by user via the advanced search options)
the domain superfamily to which the specific and non-specific hits belong
multi-domain models that were computationally detected and are likely to contain multiple single domains

The CD-Search help document provides more detail about the tool and its features.

Retrieve proteins that contain one or more of the domains present in the query sequence, using the Conserved Domain Architecture Retrieval Tool (CDART).

Modify your query to search against a different database and/or use advanced search options

133472

cd01949

GGDEF

Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as domain of unknown function 1 (DUF1). It is widely present in bacteria and often links to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain has been suggested to be homologous to the adenylyl cyclase catalytic domain. This prediction correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesiveness in bacteria.

Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue...

true

false

true

157

1e-39

158.91

100.00

3,160,0,105,266,105,26,292,133,24

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704 161 HDGLTGLLNRTSILEKLDDELSRAARDGSSVSVLMVDLDRFKSVNDTQGHLAGDAVLREASSRLRSASRRYDSVGRYGGE 240
cd01949        1 TDPLTGLPNRRAFEERLERLLARARRSGRPLALLLIDLDHFKQINDTYGHAAGDEVLKEVARRLRSSLRESDLVARLGGD 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 116623704 241 EFLVVLPGCEKAAAELQAERLREAIgGTPFRADSRPLAMTCSIGLACSSHCA--PEDLIREADDALYQAKAGGRNRVV 316
cd01949       81 EFAILLPGTDLEEAEELAERLRKAI-EEPFFIDGEEIRVTASIGIAEYPEDGedLEELLRRADKALYQAKRSGRNRVV 157

cl00291

140583

GGDEF

Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue...

29071

cd00156

REC

Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers

Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC,...

true

false

true

113

3e-26

114.18

98.23

3,23,0,38,62,38,29,93,67,44

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704  24 LAAEDNPVFQSMLKTMLTRWGYEAVIARDGTEAWNILEgDGAPRLAILDWMMPGMDGVEICRRIRSANrePYVYILLLTA 103
cd00156        1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLA-EEKPDLILLDIMMPGMDGLELLRRIRKRG--PDIPIIFLTA 77

                         90       100       110
                 ....*....|....*....|....*....|....
gi 116623704 104 RTESQDLIEGMDAGADDYLTKPFNAHELRVRIRA 137
cd00156       78 HGDDEDAVEALKAGADDYLTKPFSPEELLARIRA 111

cl09944

142340

REC

Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC,...

110022

pfam00990

GGDEF

GGDEF domain

false

160

5e-36

146.62

98.75

3,160,2,106,266,110,23,289,135,25

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704 161 HDGLTGLLNRTSILEKLDDELSRAARDGSSVSVLMVDLDRFKSVNDTQGHLAGDAVLREASSRLRSASRRYDSVGRYGGE 240
pfam00990      3 HDPLTGLPNRRYFEEELEQELQRAQRRQSPLALLLLDLDNFKRINDTYGHAVGDEVLQEVAQRLSSSLRRSDLVARLGGD 82

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 116623704 241 EFLVVLPGCEKAAAELQAERLREAIG--GTPFRADSRPLAMTCSIGLACSS--HCAPEDLIREADDALYQAKAGGRNR 314
pfam00990     83 EFAILLPDTSLEGAQELAERIRRLLAalKIPHTLSGLPLYVTISIGIAAYPndGEDAEDLLKRADQALYQAKNQGRNR 160

cl00291

140583

GGDEF

Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue...

-1

128563

smart00267

GGDEF

diguanylate cyclase

false

163

1e-34

141.62

97.55

3,160,4,105,266,109,23,289,134,29

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704 161 HDGLTGLLNRTSILEKLDDELSRAARDGSSVSVLMVDLDRFKSVNDTQGHLAGDAVLREASSRLRSASRRYDSVGRYGGE 240
smart00267     5 RDPLTGLPNRRYFEEELEQELQRAQRQGSPFALLLIDLDNFKDINDTYGHAVGDELLQEVAQRLSSCLRPGDLLARLGGD 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704 241 EFLVVLPGCEKAAAELQAERLREAIgGTPFRADSRPLAMTCSIGLACSS--HCAPEDLIREADDALYQAKAGGRNRVVAH 318
smart00267    85 EFALLLPETSLEEAIALAERILQQL-REPIIIHGIPLYLTISIGVAAYPnpGEDAEDLLKRADTALYQAKKAGRNQVAVY 163

cl00291

140583

GGDEF

Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue...

-1

129356

TIGR00254

GGDEF

diguanylate cyclase (GGDEF) domain

false

165

3e-34

140.93

97.58

3,159,2,112,271,115,21,292,138,25

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704 160 THDGLTGLLNRTSILEKLDDELSRAARDGSSVSVLMVDLDRFKSVNDTQGHLAGDAVLREASSRLRSASRRYDSVGRYGG 239
TIGR00254      3 VRDPLTGLYNRRYLEEMLDSELKRARRFQRSFSVLMIDIDNFKKINDTLGHDVGDEVLREVARILQSSVRGSDVVGRYGG 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704 240 EEFLVVLPGCEKAAAELQAERLREAIGGTPFR-ADSRPLAMTCSIGLACSSHCA--PEDLIREADDALYQAKAGGRNRVV 316
TIGR00254     83 EEFVVILPGTPLEDALSKAERLRDAINSKPIEvAGSETLTVTVSIGVACYPGHGltLEELLKRADEALYQAKKAGRNRVV 162


                 .
gi 116623704 317 A 317
TIGR00254    163 V 163

cl00291

140583

GGDEF

Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue...

-1

32381

COG2199

c-di-GMP synthetase (diguanylate cyclase, GGDEF domain) [Signal transduction mechanisms]

c-di-GMP synthetase (diguanylate cyclase, GGDEF domain) [Signal transduction...

false

181

3e-31

131.01

88.95

3,159,20,106,266,126,22,288,151,30

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704 160 THDGLTGLLNRTSILEKLDDELSRAARDGSSVSVLMVDLDRFKSVNDTQGHLAGDAVLREASSRLRSASRRYDSVGRYGG 239
COG2199       21 LHDPLTGLPNRRAFEERLERALARARRHGEPLALLLLDLDHFKQINDTYGHAAGDEVLREVARRLRSNLREGDLVARLGG 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704 240 EEFLVVLPGCEKAAAELQAERLREAIgGTPFRADSRPLAMTCSIGLACS---SHCAPEDLIREADDALYQAKAGGRNRVV 316
COG2199      101 DEFAVLLPGTSLEEAARLAERIRAAL-EEPFFLGGEELRVTVSIGVALYpedGSDDAELLLRRADLALYRAKRAGRNRVV 179


                 ..
gi 116623704 317 AH 318
COG2199      180 VF 181

cl00291

140583

GGDEF

Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue...

-1

109140

pfam00072

Response_reg

Response regulator receiver domain

false

111

3e-25

110.75

100.00

3,22,0,39,62,39,26,90,65,46

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704  23 VLAAEDNPVFQSMLKTMLTRWGYEAVIARDGTEAWNILEgDGAPRLAILDWMMPGMDGVEICRRIRsaNREPYVYILLLT 102
pfam00072      1 VLIVDDDPLIRELLRQLLEKEGYVVAEADDGEEALELLK-EKRPDLILLDIRMPGMDGLELLRRIR--RRPPTTPVIVLT 77

                         90       100       110
                 ....*....|....*....|....*....|....
gi 116623704 103 ARTESQDLIEGMDAGADDYLTKPFNAHELRVRIR 136
pfam00072     78 AHGDEEDAVEALKAGANDFLSKPFDPEELVAALR 111

cl09944

142340

REC

Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC,...

-1

31127

COG0784

CheY

FOG: CheY-like receiver [Signal transduction mechanisms]

false

130

8e-21

96.07

91.54

4,18,3,35,53,39,35,90,74,35,125,110,12

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704  19 RPMRVLAAEDNPVFQSMLKTMLTRWGYEAVIARDG-TEAWNILEGDGAPRLAILDWMMPGMDGVEICRRIRsaNREPYVY 97
COG0784        4 SGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGeEEALELLRELPQPDLILLDINMPGMDGIELLRRLR--ARGPNIP 81

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 116623704  98 ILLLTARTESQDLIEGMDAGADDYLTKP-FNAHELRVRIRA 137
COG0784       82 VILLTAYADEADRERALAAGADDYLTKPiFLEEELLAALRR 122

cl09944

142340

REC

Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC,...

-1

138024

PRK10610

chemotaxis regulatory protein CheY; Provisional

false

129

8e-12

66.20

90.70

3,18,3,31,49,35,13,63,48,72

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704  19 RPMRVLAAEDNPVFQSMLKTMLTRWGYEAVI-ARDGTEAWNILEGdGAPRLAILDWMMPGMDGVEICRRIRSANREPYVY 97
PRK10610       4 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEeAEDGVDALNKLQA-GGFGFVISDWNMPNMDGLELLKTIRADGAMSALP 82

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 116623704  98 ILLLTARTESQDLIEGMDAGADDYLTKPFNAHELRVRI 135
PRK10610      83 VLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKL 120

cl09944

142340

REC

Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC,...

-1

128724

smart00448

REC

cheY-homologous receiver domain

false

6e-10

59.90

100.00

2,20,0,41,62,41,14

                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 116623704  21 MRVLAAEDNPVFQSMLKTMLTRWGYEAVIARDGTEAWNILEgDGAPRLAILDWMMP 76
smart00448     1 MRILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLK-EEKPDLILLDIMMP 55

cl09944

142340

REC

Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC,...

-1

33501

COG3706

PleD

Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]

Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal...

false

true

false

435

1e-55

212.09

69.43

4,19,131,44,64,175,206,270,383,18,288,403,30

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704  20 PMRVLAAEDNPVFQSMLKTMLTRWGYEAVIARDGTEAWNILEGDgAPRLAILDWMMPGMDGVEICRRIRSANREPYVYIL 99
COG3706      132 PKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAEL-PPDLVLLDANMPDMDGLELCTRLRQLERTRDIPII 210

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704 100 LLTARTESQDLIEGMDAGADDYLTKPFNAHELRVRIRAGRRILDLQEELLKAREALREQATHDGLTGLLNRTSILEKLDD 179
COG3706      211 LLSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRRKRYERQLRESLERLQELALVDGLTGLFNRRYFDEHLAD 290

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704 180 ELSRAARDGSSVSVLMVDLDRFKSVNDTQGHLAGDAVLREASSRLRSASRRYDSVGRYGGEEFLVVLPGCEKAAAELQAE 259
COG3706      291 LWKRALREGRPLSLLMLDIDDFKEINDTYGHDVGDEVLRQVARRLRQTVRGLDLVARYGGEEFAVVLPDTDLEAAIAIAE 370

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 116623704 260 RLREAIGGTPF--RADSRPLAMTCSIGLACS--SHCAPEDLIREADDALYQAKAGGRNRVVAH 318
COG3706      371 RIRQKINELPFvhELSREPLEVTISIGVAEGkpGEDSIEELLKRADKALYKAKASGRNRVVVK 433

-1

137400

PRK09581

pleD

response regulator PleD; Reviewed

false

true

false

457

6e-42

166.25

67.18

5,12,147,30,43,177,14,58,191,213,271,406,20,291,428,26

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704  13 ALCNTHRPMRVLAAEDNPVFQSMLKTMLTRwGYEAVIARDGTEAWnILEGDGAPRLAILDWMMPGMDGVEICRRIRSANR 92
PRK09581     148 KYANKIEDGRILLVDDDVSQAERIANILKE-EFRVDVLSDPEEAL-IRAAEGNYDLIIVSASFENYDPLRLCSQLRSKER 225

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704  93 EPYVYILLLTARTESQDLIEGMDAGADDYLTKPFNAHELRVRIRAGRRILDLQEELLKAREALREQATHDGLTGLLNRTS 172
PRK09581     226 TRYVPILLLVDEDEDPRLVKALELGVNDYLMRPIDKNELLARVRTQIRRKRYQDALRQNLEQSIEMAVTDGLTGLHNRRY 305

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704 173 ILEKLDDELSRAARDGSSVSVLMVDLDRFKSVNDTQGHLAGDAVLREASSRLRSASRRYDSVGRYGGEEFLVVLPGCEKA 252
PRK09581     306 FDMHLKQLIERANERGKPLSLMMLDIDHFKQVNDTYGHDAGDEVLREFAKRLRKNIRGTDLIARYGGEEFVVVMPDTDIE 385

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 116623704 253 AAELQAERLREAIGGTPFR--ADSRPLAMTCSIGLACSSHC--APEDLIREADDALYQAKAGGRNRVVA 317
PRK09581     386 VAIAVAERIRRKIAEEPFAisDGKERLNVTVSIGVAELRPSgeSIEALIKRADKALYEAKNTGRNRVVA 454

-1

31088

COG0745

OmpR

Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]

Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-...

false

true

false

229

3e-29

124.29

51.09

3,20,0,43,65,43,29,95,72,45

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704  21 MRVLAAEDNPVFQSMLKTMLTRWGYEAVIARDGTEAWNILEGDgaPRLAILDWMMPGMDGVEICRRIRSANREPyVYILL 100
COG0745        1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAAREQ--PDLVLLDLMLPDLDGLELCRRLRAKKGSG-PPIIV 77

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 116623704 101 LTARTESQDLIEGMDAGADDYLTKPFNAHELRVRIRAGRR 140
COG0745       78 LTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLR 117

-1

131209

TIGR02154

PhoB

phosphate regulon transcriptional regulatory protein PhoB

false

true

false

226

2e-26

114.73

53.10

3,21,3,40,62,43,76,138,120,3

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704  22 RVLAAEDNPVFQSMLKTMLTRWGYEAVIARDGTEAWNILEgDGAPRLAILDWMMPGMDGVEICRRIRSANREPYVYILLL 101
TIGR02154      4 RILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLIN-ERGPDLILLDWMLPGTSGIELCRRLRRRPETRAIPIIML 82

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 116623704 102 TARTESQDLIEGMDAGADDYLTKPFNAHELRVRIRAG-RRI 141
TIGR02154     83 TARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVlRRI 123

-1

137576

PRK09894

hypothetical protein; Provisional

false

true

false

293

9e-26

112.50

52.56

3,161,132,18,181,150,105,286,256,30

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704 162 DGLTGLLNRTSILEKLDDelSRAARDGSSVSVLMVDLDRFKSVNDTQGHLAGDAVLREASSRLRSASRRYDSVGRYGGEE 241
PRK09894     133 DVLTGLPGRRVLDESFDH--QLRNREPLNLYLALLDIDRFKLVNDTYGHLIGDVVLRTLATYLASWTRPYETVYRYGGEE 210

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 116623704 242 FLVVLPGCEKAAAELQAERLREAIGGTPFRADSRPLAMTCSIGLA-CSSHCAPEDLIREADDALYQAKAGGRNRVV 316
PRK09894     211 FIIILKAATDEEACRAGERIRQLIANQAITHSEGRINITATFGVTrAFPEEPLDEVIGRADRAMYEGKQAGRNRVM 286

-1

133606

CHL00148

orf27

Ycf27; Reviewed

false

true

false

240

4e-22

100.50

47.08

3,20,6,43,64,49,24,91,73,46

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704  21 MRVLAAEDNPVFQSMLKTMLTRWGYEAVIARDGTEAWNILEGDgAPRLAILDWMMPGMDGVEICRRIRsanREPYVYILL 100
CHL00148       7 EKILVVDDEASIRRILETRLSIIGYEVITASDGEEALKLFHQE-QPDLVILDVMMPKLDGYGVCQEIR---KESDVPIIM 82

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 116623704 101 LTARTESQDLIEGMDAGADDYLTKPFNAHELRVRIRA 137
CHL00148      83 LTALGDVSDRITGLELGADDYVVKPFSPKELEARIRS 119

-1

137515

PRK09776

putative sensor protein; Provisional

false

true

false

1116

6e-22

99.78

14.16

2,159,688,135,294,825,21

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704  160 THDGLTGLLNRTSILEKLDDELSRAARDGSSVSVLMVDLDRFKSVNDTQGHLAGDAVLREASSRLRSASRRYDSVGRYGG 239
PRK09776      689 SHDALTGLANRASFEKQLREALQTVNSTHQRHALVFIDLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGG 768

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 116623704  240 EEFLVVLPGCEKAAAELQAERLREAIGGTPFRADSRPLAMTCSIGLACSSHCAPE--DLIREADDALYQAKAGGRNRV 315
PRK09776      769 DEFGLLLPDCNVESARFIATRIISAINDYRFPWEGRVYRVGASAGITAIDDNNHQasEVMSQADIACYAAKNAGRGRV 846

-1

137310

PRK09468

ompR

osmolarity response regulator; Provisional

false

true

false

239

1e-21

98.53

49.79

3,15,0,48,64,48,29,95,77,42

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704  16 NTHRPMRVLAAEDNPVFQSMLKTMLTRWGYEAVIARDGTEAWNILEGDgAPRLAILDWMMPGMDGVEICRRIRSANREpy 95
PRK09468       1 MMQENYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTRE-SFHLMVLDLMLPGEDGLSICRRLRSQNNP-- 77

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 116623704  96 VYILLLTARTESQDLIEGMDAGADDYLTKPFNAHELRVRIRA 137
PRK09468      78 TPIIMLTAKGEEVDRIVGLEMGADDYLPKPFNPRELLARIRA 119

-1

137662

PRK10060

RNase II stability modulator; Provisional

false

true

false

663

7e-19

89.79

22.62

5,161,239,20,183,259,82,266,341,20,286,362,5,291,368,21

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704 162 DGLTGLLNRTSILEKLDDELsrAARDGSSVSVLMVDLDRFKSVNDTQGHLAGDAVLREASSRLRSASRRYDSVGRYGGEE 241
PRK10060     240 DSITGLPNRNAIQELIDHAI--AQADNNQVGIVYLDLDNFKKVNDAYGHMFGDQLLQDVSLAILSCLEEDQTLARLGGDE 317

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 116623704 242 FLVVLPGCEKAAAELQAERLREAIgGTPFRADSRPLAMTCSIGLA-CSSHC-APEDLIREADDALYQAKAGGR 312
PRK10060     318 FLVLASHTSQAALEAMASRILTRL-RLPFRIGLIEVYTGCSIGIAlSPEHGdDSESLIRSADTAMYTAKEGGR 389

-1

137400

PRK09581

pleD

response regulator PleD; Reviewed

false

true

false

457

1e-18

88.82

24.95

2,21,3,40,62,43,74

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704  22 RVLAAEDNPVFQSMLKTMLTRWGYEAVIARDGTEAWNILEgDGAPRLAILDWMMPGMDGVEICRRIRSANREPYVYILLL 101
PRK09581       4 RILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIEICE-REQPDIILLDVMMPGMDGFEVCRRLKSDPATAHIPVVMV 82

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 116623704 102 TARTESQDLIEGMDAGADDYLTKPFNAHELRVRIR 136
PRK09581      83 TALDDPSDRVRGLEAGADDFLTKPINDVALFARVK 117

-1

138153

PRK10766

DNA-binding transcriptional regulator TorR; Provisional

false

true

false

224

2e-18

87.79

49.55

3,21,3,45,67,48,25,95,73,41

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704  22 RVLAAEDNPVFQSMLKTMLTRWGYEAVIARDGTEAWNILEGDGAPrLAILDWMMPGMDGVEICRRIRSANRepyVYILLL 101
PRK10766       4 HILVVEDEPVTRARLQGYFEQEGYRVSEAASGAGMREIMQNQHVD-LILLDINLPGEDGLMLTRELRSRST---VGIILV 79

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 116623704 102 TARTESQDLIEGMDAGADDYLTKPFNAHELRVRIR 136
PRK10766      80 TGRTDSIDRIVGLEMGADDYVTKPFELRELLVRVK 114

-1

138195

PRK10816

DNA-binding transcriptional regulator PhoP; Provisional

false

true

false

223

7e-18

86.41

52.47

4,20,0,41,62,41,29,91,71,3,97,74,43

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704  21 MRVLAAEDNPVFQSMLKTMLTRWGYEAVIARDGTEAWNILEgDGAPRLAILDWMMPGMDGVEICRRIRSAN-REPyvyIL 99
PRK10816       1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLN-EHLPDIAIVDLGLPDEDGLSLIRRWRSNDvSLP---IL 76

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 116623704 100 LLTARTESQDLIEGMDAGADDYLTKPFNAHELRVRIRAGRR 140
PRK10816      77 VLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMR 117

-1

33243

COG3437

Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]

Response regulator containing a CheY-like receiver domain and an HD-GYP domain [...

false

true

false

360

8e-18

86.12

33.89

3,15,9,46,62,55,32,94,88,43

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704  16 NTHRPMRVLAAEDNPVFQSMLKTMLTRWGYEAVIARDGTEAWNILEgDGAPRLAILDWMMPGMDGVEICRRIRSANREP- 94
COG3437       10 EPDEKLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQ-EEPPDLVLLDVRMPEMDGAEVLNKLKAMSPSTr 88

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 116623704  95 YVYILLLTARTESQDLIEGMDAGADDYLTKPFNAHELRVRIRA 137
COG3437       89 RIPVILLTAYADSEDRQRALEAGADDYLSKPISPKELVARVSS 131

-1

138305

PRK10955

DNA-binding transcriptional regulator CpxR; Provisional

false

true

false

232

1e-17

86.03

47.84

3,21,2,39,62,41,32,97,73,40

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704  22 RVLAAEDNPVFQSMLKTMLTRWGYEAVIARDGTEAWNILegDGAPRLAILDWMMPGMDGVEICRRIRSANREPyvyILLL 101
PRK10955       3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL--DDSIDLLLLDVMMPKKNGIDTLKALRQTHQTP---VIML 77

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 116623704 102 TARTESQDLIEGMDAGADDYLTKPFNAHELRVRIRA 137
PRK10955      78 TARGSELDRVLGLELGADDYLPKPFNDRELVARIRA 113

-1

138611

PRK11517

transcriptional regulatory protein YedW; Provisional

false

true

false

223

1e-17

85.75

52.02

4,20,0,39,59,40,6,67,46,27,97,73,43

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704  21 MRVLAAEDNPVFQSMLKTMLTRWGYEAVIARDGTEAWNI-LEGDGAprLAILDWMMPGMDGVEICRRIRSANREPyvyIL 99
PRK11517       1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLaLKDDYA--LIILDIMLPGMDGWQILQTLRTAKQTP---VI 75

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 116623704 100 LLTARTESQDLIEGMDAGADDYLTKPFNAHELRVRIRAGRR 140
PRK11517      76 CLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLR 116

-1

104359

PRK10161

transcriptional regulator PhoB; Provisional

false

true

false

229

5e-17

83.61

51.53

2,21,3,40,62,43,78

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704  22 RVLAAEDNPVFQSMLKTMLTRWGYEAVIARDGTEAWNILEgDGAPRLAILDWMMPGMDGVEICRRIRSANREPYVYILLL 101
PRK10161       4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLN-EPWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVML 82

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 116623704 102 TARTESQDLIEGMDAGADDYLTKPFNAHELRVRIRAGRR 140
PRK10161      83 TARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121

-1

130454

TIGR01387

cztR_silR_copR

heavy metal response regulator

false

true

false

218

7e-17

83.31

52.75

4,22,0,36,59,36,29,88,66,6,97,72,43

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704  23 VLAAEDNPVFQSMLKTMLTRWGYEAVIARDGTEAWNiLEGDGAPRLAILDWMMPGMDGVEICRRIR-SANREPyvyILLL 101
TIGR01387      1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLH-LALKDDYDLIILDVMLPGMDGWQILQTLRrSGKQTP---VLFL 76

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 116623704 102 TARTESQDLIEGMDAGADDYLTKPFNAHELRVRIRAGRR 140
TIGR01387     77 TARDSVADKVKGLDLGADDYLVKPFSFSELLARVRTLLR 115

-1

32386

COG2204

AtoC

Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]

Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding...

false

true

false

464

1e-16

82.65

25.22

3,16,0,45,62,45,27,91,72,45

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704  17 THRPMRVLAAEDNPVFQSMLKTMLTRWGYEAVIARDGTEAWNILEgDGAPRLAILDWMMPGMDGVEICRRIRSanREPYV 96
COG2204        1 MMMMARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALS-ESPFDLVLLDIRMPGMDGLELLKEIKS--RDPDL 77

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 116623704  97 YILLLTARTESQDLIEGMDAGADDYLTKPFNAHELRVRIR 136
COG2204       78 PVIVMTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVE 117

-1

138051

PRK10643

DNA-binding transcriptional regulator BasR; Provisional

false

true

false

222

1e-15

78.98

51.35

3,20,0,42,63,42,30,95,72,42

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704  21 MRVLAAEDNPVFQSMLKTMLTRWGYEAVIARDGTEAWNILEGdGAPRLAILDWMMPGMDGVEICRRIRSANREpyVYILL 100
PRK10643       1 MKILIVEDDTLLLQGLILAAQTEGYACDGVSTAREAEQSLES-GHYSLVVLDLGLPDEDGLHFLARIRQKKYT--LPVLI 77

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 116623704 101 LTARTESQDLIEGMDAGADDYLTKPFNAHELRVRIRA 137
PRK10643      78 LTARDTLEDRIAGLDVGADDYLVKPFALEELHARIRA 114

-1

32379

COG2197

CitB

Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]

Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain...

false

true

false

211

1e-15

79.23

59.24

5,20,0,29,49,31,12,62,43,27,91,70,46,137,119,6

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704  21 MRVLAAEDNPVFQSMLKTMLTRWGYEAVI--ARDGTEAWNILEgDGAPRLAILDWMMPGMDGVEICRRIRSanREPYVYI 98
COG2197        1 IKVLIVDDHPLVREGLRQLLELEPDLEVVgeASNGEEALDLAR-ELKPDVVLLDLSMPGMDGLEALKQLRA--RGPDIKV 77

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 116623704  99 LLLTARTESQDLIEGMDAGADDYLTKPFNAHELRVRIRA---GRRILD 143
COG2197       78 VVLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAvaaGGTYLP 125

-1

34606

COG5001

Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Signal transduction mechanisms]

Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF...

false

true

false

663

1e-15

78.91

23.68

2,161,230,132,293,364,23

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704 162 DGLTGLLNRTSILEKLDDELSRAARDGSSVSVLMVDLDRFKSVNDTQGHLAGDAVLREASSRLRSASRRYDSVGRYGGEE 241
COG5001      231 DSLTGLPNRRRFFAELDARLAAARQSGRRLVLGVIDLDGFKPVNDAFGHATGDRLLIEVGRRLKAFDGAPILAARLGGDE 310

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 116623704 242 FLVVLPGCEKAAAELQAERLREAIGGTPFRADSRPLAMTCSIGLACSSHCAP--EDLIREADDALYQAKAGGRNRVV 316
COG5001      311 FALIIPALEDDALRVAGARALCESLQAPYDLRGVRVQVGASIGIAPFPSGADtsEQLFERADYALYHAKQNGKGAAV 387

-1

138104

PRK10710

DNA-binding transcriptional regulator BaeR; Provisional

false

true

false

240

4e-15

77.48

46.67

3,21,11,40,62,51,32,97,83,40

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704  22 RVLAAEDNPVFQSMLKTMLTRWGYEAVIARDGTEAWNILEgDGAPRLAILDWMMPGMDGVEICRRIRSANREPyvyILLL 101
PRK10710      12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDEVLPYVR-QTPPDLILLDLMLPGTDGLTLCREIRRFSDIP---IVMV 87

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 116623704 102 TARTESQDLIEGMDAGADDYLTKPFNAHELRVRIRA 137
PRK10710      88 TAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKT 123

-1

138391

PRK11083

DNA-binding response regulator CreB; Provisional

false

true

false

229

8e-15

76.18

49.78

3,20,3,42,63,45,26,91,71,46

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704  21 MRVLAAEDNPVFQSMLKTMLTRWGYEAVIARDGTEAWNILEGdGAPRLAILDWMMPGMDGVEICRRIRSanREPYVYILL 100
PRK11083       4 PTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQ-QPPDLVILDVGLPDISGFELCRQLRA--FHPALPVIF 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 116623704 101 LTARTESQDLIEGMDAGADDYLTKPFNAHELRVRIRA 137
PRK11083      81 LTARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRT 117

-1

138454

PRK11173

two-component response regulator; Provisional

false

true

false

237

1e-13

72.79

46.41

3,22,5,39,62,44,30,95,74,41

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704  23 VLAAEDNPVFQSMLKTMLTRWGYEAVIARDGTEAWNILEgDGAPRLAILDWMMPGMDGVEICRRIRSANRepyVYILLLT 102
PRK11173       6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS-ENDINLVIMDINLPGKNGLLLARELREQAN---VALMFLT 81

                         90       100       110
                 ....*....|....*....|....*....|....
gi 116623704 103 ARTESQDLIEGMDAGADDYLTKPFNAHELRVRIR 136
PRK11173      82 GRDNEVDKILGLEIGADDYITKPFNPRELTIRAR 115

-1

137960

PRK10529

DNA-binding transcriptional activator KdpE; Provisional

false

true

false

225

1e-13

72.18

52.00

4,19,0,32,53,32,8,61,41,33,97,74,43

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704  20 PMRVLAAEDNPVFQSMLKTMLTRWGYEAVIARdgTEAWNILE-GDGAPRLAILDWMMPGMDGVEICRRIRSANREPyvyI 98
PRK10529       1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAE--TLQRGLLEaATRKPDLIILDLGLPDGDGIEFIRDLRQWSAIP---V 75

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 116623704  99 LLLTARTESQDLIEGMDAGADDYLTKPFNAHELRVRIRAGRR 140
PRK10529      76 IVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR 117

-1

138540

PRK11361

acetoacetate metabolism regulatory protein AtoC; Provisional

false

true

false

457

2e-13

71.80

24.51

3,21,5,39,61,44,28,91,72,45

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704  22 RVLAAEDNPVFQSMLKTMLTRWGYEAVIARDGTEAWNILeGDGAPRLAILDWMMPGMDGVEICRRIRSanREPYVYILLL 101
PRK11361       6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLF-ADIHPDVVLMDIRMPEMDGIKALKEMRS--HETRTPVILM 82

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 116623704 102 TARTESQDLIEGMDAGADDYLTKPFNAHELRVRIR 136
PRK11361      83 TAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQ 117

-1

137770

PRK10245

adrA

diguanylate cyclase AdrA; Provisional

false

true

false

371

2e-13

71.47

42.05

3,159,210,104,270,314,23,293,345,21

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704 160 THDGLTGLLNRTSILEKLDDELSRAARDGSSVSVLMVDLDRFKSVNDTQGHLAGDAVLREASSRLRSASRRYDSVGRYGG 239
PRK10245     211 TRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGG 290

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704 240 EEFLVVLPGCEKAAAELQAERLREaiggtpfRADSRPLAMTCSIGLACSSHCAP--------EDLIREADDALYQAKAGG 311
PRK10245     291 DEFAVIMSGTPAESAITAMLRVHE-------GLNTLRLPNAPQVTLRISVGVAPlnpqmshyREWLKSADLALYKAKKAG 363


                 ...
gi 116623704 312 RNR 314
PRK10245     364 RNR 366

-1

137827

PRK10336

DNA-binding transcriptional regulator QseB; Provisional

false

true

false

219

4e-13

70.35

52.05

5,20,0,42,64,42,5,69,48,19,88,68,6,97,74,40

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704  21 MRVLAAEDNPVFQSMLKTMLTRWGYEAVIARDGTEAWNILEGdgAPRLA-ILDWMMPGMDGVEICRRIR-SANREPyvyI 98
PRK10336       1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYS--APYDAvILDLTLPGMDGRDILREWReKGQREP---V 75

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 116623704  99 LLLTARTESQDLIEGMDAGADDYLTKPFNAHELRVRIRA 137
PRK10336      76 LILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEA 114

-1

138538

PRK11359

cAMP phosphodiesterase; Provisional

false

true

false

799

1e-12

69.10

18.40

3,161,378,24,189,402,74,264,476,49

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704 162 DGLTGLLNRTSILEKLDDELSRAArdgsSVSVLMVDLDRFKSVNDTQGHLAGDAVLREASSRLRSASRRYDSVGRYGGEE 241
PRK11359     379 DPMTGLPNRNNLHNYLDDLVDKAV----SPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGTQ 454

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 116623704 242 FLVVLPGCEKAAAELQAERLREaIGGTPFRADSRPLAMTCSIGLACSSHCAPEDLIREADDALYQAKAGGRN 313
PRK11359     455 FVLVSLENDVSNITQIADELRN-VVSKPIMIDDKPFPLTLSIGISYDVGKNRDYLLSTAHNAMDYIRKNGGN 525

-1

137615

PRK09966

hypothetical protein; Provisional

false

true

false

407

2e-12

68.12

36.61

5,160,249,10,170,263,13,188,276,84,272,361,16,288,378,20

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704 161 HDGLTGLLNR----TSILEKLDDELSRaardgSSVSVLMVDLDRFKSVNDTQGHLAGDAVLREASSRLRSASRRYDSVGR 236
PRK09966     250 HDPLTGLANRaafrSGINTLMNNSDAR-----KTSALLFLDGDNFKYINDTWGHATGDRVLIEIAKRLAEFGGLRHKAYR 324

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 116623704 237 YGGEEFLVVLPGCEKAAAELQAERLREAIGGTPFRA-DSRPLAMTCSIGLACS-SHCAPEDLIREADDALYQAK 308
PRK09966     325 LGGDEFAMVLYDVQSESEVQQICSALTQIFNLPFDLhNGHQTTMTLSIGYAMTiEHASAEKLQELADHNMYQAK 398

-1

137546

PRK09836

DNA-binding transcriptional activator CusR; Provisional

false

true

false

226

3e-12

67.73

50.00

3,20,0,38,59,38,34,95,72,41

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704  21 MRVLAAEDNPVFQSMLKTMLTRWGYEAVIARDGTEAWNiLEGDGAPRLAILDWMMPGMDGVEICRRIRSANREpyVYILL 100
PRK09836       1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYH-LAMTGDYDLIILDIMLPDVNGWDIVRMLRSANKG--MPILL 77

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 116623704 101 LTARTESQDLIEGMDAGADDYLTKPFNAHELRVRIR 136
PRK09836      78 LTALGTIEHRVKGLELGADDYLVKPFAFAELLARVR 113

-1

131922

TIGR02875

spore_0_A

sporulation transcription factor Spo0A

false

true

false

262

1e-11

65.58

45.04

4,19,1,22,41,24,7,48,32,13,62,45,74

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704  20 PMRVLAAEDNPVFQSMLKTMLT-RWGYEAV-IARDGTEAWNILEgDGAPRLAILDWMMPGMDGVEICRRIRSANREPYVY 97
TIGR02875      2 KIRIVIADDNKEFCNLLKEYLAaQPDMEVVgVAHNGVDALELIK-EQQPDVVVLDIIMPHLDGIGVLEKLNEIELSARPR 80

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 116623704  98 ILLLTARTESQDLIEGMDAGADDYLTKPFNAHELRVRIR 136
TIGR02875     81 VIMLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIR 119

-1

34367

COG4753

Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]

Response regulator containing CheY-like receiver domain and AraC-type DNA-binding...

false

true

false

475

2e-11

64.95

23.16

5,21,2,20,41,24,7,48,32,13,62,45,27,91,72,40

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704  22 RVLAAEDNPVFQSMLKTMLT--RWGYEAV-IARDGTEAWNILEgDGAPRLAILDWMMPGMDGVEICRRIRSanREPYVYI 98
COG4753        3 KVLIVDDEPLIREGLKSLIDweALGIEVVgTAANGKEALELIQ-ETQPDIVITDINMPGMDGLDLIKAIKE--QSPDTEF 79

                         90       100       110
                 ....*....|....*....|....*....|...
gi 116623704  99 LLLTARTESQDLIEGMDAGADDYLTKPFNAHEL 131
COG4753       80 IILSGYDEFEYAKKAMKLGVKDYLLKPVDKAEL 112

-1

139663

PRK13557

histidine kinase; Provisional

false

true

false

538

5e-11

63.59

21.38

5,21,414,56,77,471,11,90,482,18,110,500,9,119,511,18

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704  22 RVLAAEDNPVFQSMLKTMLTRWGYEAVIARDGTEAWNILEGDGAPRLAILDWMMPG-MDGVEICRRIRsaNREPYVYILL 100
PRK13557     415 TILIVDDRPDVAELARMILEDFGYRTLVASNGREALEILESHPEVDLLFTDLIMPGgMNGVMLAREAR--RRQPKIKVLL 492

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 116623704 101 LTARTESQdlIEGMDAGAD--DYLTKPFNAHELRVRIRA 137
PRK13557     493 TTGYAEAS--IERTDVGGSefDIVNKPYRRAELARRVRM 529

-1

134369

PRK00742

chemotaxis-specific methylesterase; Provisional

false

true

false

345

9e-11

62.88

37.10

7,18,0,25,43,26,5,48,32,15,64,47,30,97,77,9,106,88,21,127,118,10

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704  19 RPMRVLAAEDNPVFQSMLKTMLTRW-GYEAV-IARDGTEAWNILEGDgAPRLAILDWMMPGMDGVEICRRIRSANREPyv 96
PRK00742       1 MKIRVLVVDDSAFMRRLLSEILNSDpDIEVVgTARDGLEAVEKIKKL-NPDVITLDVEMPVMDGIEALRKIMALRPTP-- 77

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 116623704  97 yILLLTARTE--SQDLIEGMDAGADDYLTKPFN---------AHELRVRIRA 137
PRK00742      78 -VVMVSSLTErgAEITLEALELGAVDFVPKPFLgisegmdaaAELLAEKVRA 128

-1

34203

COG4565

CitB

Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]

Response regulator of citrate/malate metabolism [Transcription / Signal transduction...

false

true

false

224

1e-10

62.54

53.12

5,20,0,23,43,24,5,48,30,13,62,43,31,95,74,45

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704  21 MRVLAAEDNPVFQSMLKTMLTRW-GYEAV-IARDGTEAWNILEgDGAPRLAILDWMMPGMDGVEICRRIRSANREpyVYI 98
COG4565        1 INVLIIEDDPMVAEIHRRYVKQIpGFSVVgTAGTLEEAKMIIE-EFKPDLILLDIYMPDGNGIELLPELRSQHYP--VDV 77

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 116623704  99 LLLTARTESQDLIEGMDAGADDYLTKPFNAHELRVRIRAGRR 140
COG4565       78 IVITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYRQ 119

-1

33090

COG3279

LytT

Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]

Response regulator of the LytR/AlgR family [Transcription / Signal transduction...

false

true

false

244

1e-10

61.91

47.95

5,20,1,29,49,32,13,63,45,25,90,70,18,110,88,30

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704  21 MRVLAAEDNPVFQSMLKTMLTRWGYEAVI--ARDGTEAWNILEGdGAPRLAILDWMMPGMDGVEICRRIRsaNREPYVYI 98
COG3279        2 LKVLIVDDEPLAREELRRILNEIPDIEIVgeAENGEEALQLLQG-LRPDLVFLDIAMPDINGIELAARIR--KGDPRPAI 78

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 116623704  99 LLLTARTESQdlIEGMDAGADDYLTKPFNAHELRVRIRAGRR 140
COG3279       79 VFVTAHDEYA--VAAFEVEALDYLLKPISEERLAKTLERLRR 118

-1

130877

TIGR01818

ntrC

nitrogen regulation protein NR(I)

false

true

false

463

3e-10

60.91

22.89

3,22,0,38,61,38,28,91,66,40

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704  23 VLAAEDNPVFQSMLKTMLTRWGYEAVIARDGTEAWNILeGDGAPRLAILDWMMPGMDGVEICRRIRSanREPYVYILLLT 102
TIGR01818      1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRAL-ARGQPDLLITDVRMPGEDGLDLLPQIKK--RHPQLPVIVMT 77

                         90       100
                 ....*....|....*....|....*....
gi 116623704 103 ARTESQDLIEGMDAGADDYLTKPFNAHEL 131
TIGR01818     78 AHSDLDTAVAAYQRGAFEYLPKPFDLDEA 106

-1

33501

COG3706

PleD

Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]

Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal...

false

true

false

435

7e-10

59.93

20.23

3,44,12,17,62,29,30,96,59,41

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704  45 YEAVIARDGTEAWNILEgDGAPRLAILDWMMPGMDGVEICRRIRSANRepyvYILLLTARTESQDLIEGMDAGADDYLTK 124
COG3706       13 KEVATAKKGLIALAILL-DHKPDYKLLDVMMPGMDGFELCRRLKAEPA----TVVMVTALDDSAPRVRGLKAGADDFLTK 87

                         90
                 ....*....|...
gi 116623704 125 PFNAHELRVRIRA 137
COG3706       88 PVNDSQLFLRAKS 100

-1

138091

PRK10693

response regulator of RpoS; Provisional

false

true

false

337

9e-10

59.33

29.97

3,21,8,42,64,50,24,90,74,35

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704  22 RVLAAEDNPVFQSMLKTMLTRWGYEAVIARDGTEAWNILEGDgAPRLAILDWMMPGMDGVEICRRIRsaNREPYVYILLL 101
PRK10693       9 QILIVEDEPVFRSLLDSWFSSLGATTVLAADGVDALELLGGF-TPDLMICDIAMPRMNGLKFVEHLR--NRGDQTPVLVI 85

                         90       100
                 ....*....|....*....|....
gi 116623704 102 TARTESQDLIEGMDAGADDYLTKP 125
PRK10693      86 SATENMADIAKALRLGVEDVLLKP 109

-1

33728

COG3947

Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Response regulator containing CheY-like receiver and SARP domains [Signal transduction...

false

true

false

361

6e-09

56.52

32.41

5,20,0,41,62,41,31,95,72,20,117,92,14,131,107,10

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704  21 MRVLAAEDNPVFQSMLKTMLTRWGYEAVIARDGTEAWNILEgDGAPRLAILDWMMPGMDGVEICRRIRSANREpyVYILL 100
COG3947        1 PRIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLE-VFKPDLIFLDIVMPYMNGIEFAEQVRDIESA--VPIIF 77

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 116623704 101 LTARTESQDLIEGMDagADDYLTKPFNAHEL-RVRIRAGRRI 141
COG3947       78 ISSHAEYADDSFGMN--LDDYLPKPVTPEKLnRAIDRRLKRV 117

-1

32383

COG2201

CheB

Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]

Chemotaxis response regulator containing a CheY-like receiver domain and a...

false

true

false

350

7e-09

56.44

30.29

4,20,1,24,44,27,19,64,46,44,109,90,17

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704  21 MRVLAAEDNPVFQSMLKTMLTRWG--YEAVIARDGTEAWNILEGDgAPRLAILDWMMPGMDGVEICRRIRSANREPYVYI 98
COG2201        2 IRVLVVDDSALMRKVISDILNSDPdiEVVGTARNGREAIDKVKKL-KPDVITLDVEMPVMDGLEALRKIMRLRPLPVIMV 80

                         90       100
                 ....*....|....*....|....*...
gi 116623704  99 LLLTARTESQdLIEGMDAGADDYLTKPF 126
COG2201       81 SSLTEEGAEA-TLEALELGAVDFIAKPS 107

-1

138409

PRK11107

hybrid sensory histidine kinase BarA; Provisional

false

true

false

920

2e-08

55.29

14.24

9,1,648,18,19,667,43,62,713,1,67,714,21,88,737,5,93,743,1,97,744,8,105,754,6,113,760,19

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704   2 PNASSNTAGLLALCNTHR-PMRVLAAEDNPVFQSMLKTMLTRWGYEAVIARDGTEAWNILEG---DgaprLAILDWMMPG 77
PRK11107     649 EPCHHKQPPLLPPTDQSKlPLTVMAVDDNPANLKLIGALLEEQVEHVVLCDSGHQAVELAKQrpfD----LIFMDIQMPG 724

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704  78 MDGVEICRRIR--SANRE-PyvyILLLTART--ESQDLIegMDAGADDYLTKPFNAHELR 132
PRK11107     725 MDGIRACELIRqlPHNQNtP---IIAVTAHAmaGERERL--LGAGMDDYLAKPIDEAALK 779

-1

137850

PRK10365

transcriptional regulatory protein ZraR; Provisional

false

true

false

441

2e-08

55.03

25.62

3,16,1,45,62,46,29,93,75,39

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704  17 THRPMRVLAAEDNPVFQSMLKTMLTRWGYEAVIARDGTEAWNILEgDGAPRLAILDWMMPGMDGVEICRRIRSANrePYV 96
PRK10365       2 THDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVR-EQVFDLVLCDVRMAEMDGIATLKEIKALN--PAI 78

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 116623704  97 YILLLTARTESQDLIEGMDAGADDYLTKPFNAHELR 132
PRK10365      79 PVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQ 114

-1

139064

PRK12555

chemotaxis-specific methylesterase; Provisional

false

true

false

340

3e-08

54.63

39.12

7,19,0,22,41,23,7,48,31,15,64,46,30,97,76,9,106,87,19,125,115,18

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704  20 PMRVLAAEDNPVFQSMLKTMLT-RWGYEAV-IARDGTEAWNILEGDgAPRLAILDWMMPGMDGVEICRRIRSANREPyvy 97
PRK12555       1 PMNVGIVDDSALAREALRRIIArRPDHRVLgVATDGLQARDLCKAQ-PPDVVLLDLEMPRMDGLTFLRRIMRRRPCP--- 76

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 116623704  98 ILLLTARTE--SQDLIEGMDAGADDYLTKP---------FNAHELRVRIRAGRRILD 143
PRK12555      77 VLIVSSLTEagASITYEALGAGALDAVDKPklgigrgldAYAQELLAKIDQAARALV 133

-1

139916

PRK13856

two-component response regulator VirG; Provisional

false

true

false

241

6e-08

53.28

48.13

3,22,3,44,67,47,28,97,75,44

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704  23 VLAAEDNPVFQSMLKTMLTRWGYEAVIARDGTEAWNILEGDGAPrLAILDWMMPGMDGVEICRRIRSANREPYvyILLLT 102
PRK13856       4 VLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLSSETVD-VVVVDLNLGREDGLEIVRSLATKSDVPI--IIISG 80

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 116623704 103 ARTESQDLIEGMDAGADDYLTKPFNAHELRVRIRAGRRI 141
PRK13856      81 DRLEEADKVVALELGATDFIAKPFGTREFLARIRVALRV 119

-1

34205

COG4567

Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]

Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [..

false

true

false

182

1e-07

52.27

57.69

3,23,12,40,64,52,25,91,77,40

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704  24 LAAEDNPVFQSMLKTMLTRWGYEAVIARDGTEAWNILEGDgAPRLAILDWMMPGMDGVEICRRIRSanREPYVYILLLTA 103
COG4567       13 LLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAARTA-PPAYAVVDLKLGDGSGLAVIEALRE--RRADMRIVVLTG 89

                         90       100
                 ....*....|....*....|....*...
gi 116623704 104 RTESQDLIEGMDAGADDYLTKPFNAHEL 131
COG4567       90 YASIATAVEAVKLGACDYLAKPADADDI 117

-1

137612

PRK09959

hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional

false

true

false

1197

2e-07

52.04

9.36

3,20,958,46,67,1004,26,95,1030,40

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704   21 MRVLAAEDNPVFQSMLKTMLTRWGYEAVIARDGTEAWNILEGDGAPrLAILDWMMPGMDGVEICRRIRSANREpyVYILL 100
PRK09959      959 LSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYD-LLITDVNMPNMDGFELTRKLREQNSS--LPIWG 1035

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 116623704  101 LTARTESQDLIEGMDAGADDYLTKPFNAHELRVRI 135
PRK09959     1036 LTANAQANEREKGLNCGMNLCLFKPLTLDVLKTHL 1070

-1

138099

PRK10701

DNA-binding transcriptional regulator RstA; Provisional

false

true

false

240

2e-07

51.64

47.92

3,21,2,42,64,44,30,97,74,43

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704  22 RVLAAEDNPVFQSMLKTMLTRWGYEAVIARDGTEAWNILEGDgAPRLAILDWMMPGMDGVEICRRIRSANREPyvyILLL 101
PRK10701       3 TIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEETILRE-QPDLVLLDIMLPGKDGMTICRDLRPKWSGP---IVLL 78

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 116623704 102 TARTESQDLIEGMDAGADDYLTKPFNAHELRVRIRAGRR 140
PRK10701      79 TSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLR 117

-1

34204

COG4566

TtrR

Response regulator [Signal transduction mechanisms]

false

true

false

202

1e-06

49.08

58.91

5,19,4,15,35,19,29,65,48,23,88,72,6,97,78,45

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704  20 PMRVLAAEDNPVFQSmLKTMLTRWGYEAVIARDGTEAWNILEGDGaPRLAILDWMMPGMDGVEICRRIR-SANREPyvyI 98
COG4566        5 PLVHVVDDDESVRDA-LAFLLESAGFQVKCFASAEEFLAAAPLDR-PGCLLLDVRMPGMSGLELQDRLAeRGIRLP---V 79

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 116623704  99 LLLTARTESQDLIEGMDAGADDYLTKPFNAHELRVRIRAGRRIL 142
COG4566       80 IFLTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALARD 123

-1

132001

TIGR02956

TMAO_torS

TMAO reductase sytem sensor TorS

false

true

false

968

1e-06

49.01

12.09

3,19,701,44,64,745,25,89,771,47

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704  20 PMRVLAAEDNPVFQSMLKTMLTRWGYEAVIARDGTEAWNILEGDgAPRLAILDWMMPGMDGVEICRRIRS-ANREPYVYI 98
TIGR02956    702 PQRVLLVEDNEVNQMVAQGFLTRLGHKVTLAESGQSALECFHQH-AFDLALLDINLPDGDGVTLLQQLRAiYGAKNEVKF 780

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 116623704  99 LLLTARTESQDLIEGMDAGADDYLTKPFNAHELRVRIR 136
TIGR02956    781 IAFSAHVFNEDVAQYLAAGFDGFLAKPVVEEQLTAMIA 818

-1

138282

PRK10923

glnG

nitrogen regulation protein NR(I); Provisional

false

true

false

469

2e-06

48.38

22.39

3,22,5,41,64,46,24,90,70,40

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704  23 VLAAEDNPVFQSMLKTMLTRWGYEAVIARDGTEAWNILEGDgAPRLAILDWMMPGMDGVEICRRIRsaNREPYVYILLLT 102
PRK10923       6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALASK-TPDVLLSDIRMPGMDGLALLKQIK--QRHPMLPVIIMT 82

                         90       100
                 ....*....|....*....|....*...
gi 116623704 103 ARTESQDLIEGMDAGADDYLTKPFNAHE 130
PRK10923      83 AHSDLDAAVSAYQQGAFDYLPKPFDIDE 110

-1

138212

PRK10841

hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional

false

true

false

947

3e-06

47.73

10.77

6,20,824,41,62,865,31,93,897,1,97,898,8,105,909,7,115,916,10

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704  21 MRVLAAEDNPVFQSMLKTMLTRWGYEAVIARDGTEAWNILEgDGAPRLAILDWMMPGMDGVEICRRIRSANRE-PyvyIL 99
PRK10841     825 MMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLS-KNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTlP---VI 900

                         90       100
                 ....*....|....*....|....*....
gi 116623704 100 LLTART---ESQDLIEgmdAGADDYLTKP 125
PRK10841     901 GVTANAlaeEKQRCLE---AGMDSCLSKP 926

-1

138058

PRK10651

transcriptional regulator NarL; Provisional

false

true

false

216

6e-06

46.59

50.00

4,15,1,34,49,37,12,62,49,32,96,81,28

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704  16 NTHRPMRVLAAEDNPVFQSMLKTMLTRWGYEAVI--ARDGTEAWNILEgDGAPRLAILDWMMPGMDGVEICRRIRSANRE 93
PRK10651       2 SNQEPATILLIDDHPMLRTGVKQLISMAPDITVVgeASNGEQGIELAE-SLDPDLILLDLNMPGMNGLETLDKLREKSLS 80

                         90       100       110
                 ....*....|....*....|....*....|.
gi 116623704  94 PyvYILLLTARTESQDLIEGMDAGADDYLTK 124
PRK10651      81 G--RIVVFSVSNHEEDVVTALKRGADGYLLK 109

-1

137869

PRK10403

transcriptional regulator NarP; Provisional

false

true

false

215

3e-05

44.46

54.88

5,19,5,21,40,27,9,49,37,14,64,51,29,95,80,43

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704  20 PMRVLAAEDNPVFQSMLKTML-TRWGYEAVI-ARDGTEAWNILEGDgAPRLAILDWMMPGMDGVEICRRIRSANREpyVY 97
PRK10403       6 PFQVLIVDDHPLMRRGVRQLLeLDPGFEVVAeAGDGASAIDLANRL-DIDVILLDLNMKGMSGLDTLNALRRDGVT--AQ 82

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 116623704  98 ILLLTARTESQDLIEGMDAGADDYLTKPFNAHELRVRIRAG 138
PRK10403      83 IIILTVSDASSDIFALIDAGADGYLLKDSDPEVLLEAIRAG 123

-1

33502

COG3707

AmiR

Response regulator with putative antiterminator output domain [Signal transduction mechanisms]

Response regulator with putative antiterminator output domain [Signal transduction...

false

true

false

194

3e-05

44.47

58.25

4,16,1,32,48,34,13,62,47,20,85,67,47

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704  17 THRPMRVLAAEDNPVFQSMLKTMLTRWGYEAV-IARDGTEAWNILEgDGAPRLAILDWMMPGMDGVEicrRIRSANREPY 95
COG3707        2 AAMLLRVLVADDEALTRMDIREGLLEAGYQRVgEAADGLEAVEVCE-RLQPDVVILDIEMPRRDIIE---ALLLASENVA 77

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 116623704  96 VYILLLTARTESQDLIEGMDAGADDYLTKPFNAHELR 132
COG3707       78 RPIVALTAYSDPALIEAAIEAGVMAYIVKPLDESRLL 114

-1

137324

PRK09483

response regulator; Provisional

false

true

false

216

6e-05

43.55

36.57

3,64,46,27,93,73,43,136,119,6

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704  65 APRLAILDWMMPGMDGVEICRRIRSANrePYVYILLLTARTESQDLIEGMDAGADDYLTKPFNAHELRVRIR---AGRRI 141
PRK09483      47 AVDVVLMDMNMPGIGGLEATRKILRST--PDVKIIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRsvhSGQRY 124


                 .
gi 116623704 142 L 142
PRK09483     125 I 125

-1

138376

PRK11059

regulatory protein CsrD; Provisional

false

true

false

642

8e-04

39.87

13.71

3,161,230,70,231,301,3,234,305,13

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704 162 DGLTGLLNRTSILEKLDDELSRAARDGSSVSVLMVDLDRFKSVNDTQGHLAGDAVLREASSRLRSASRRY-DSV-GRYGG 239
PRK11059     231 DAKTGLGNRLFFDNQLDTLLEDQEKVGAHGVVMLIRLPDFDLLQEELGESQVDELLFELINLLSTFVQRYpGALlARYSR 310


                 ....*...
gi 116623704 240 EEFLVVLP 247
PRK11059     311 SDFAVLLP 318

-1

137244

PRK09390

fixJ

response regulator FixJ; Provisional

false

true

false

202

8e-04

39.62

27.23

3,69,51,19,89,70,5,95,75,31

                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 116623704  70 ILDWMMPGMDGVEICRRIRsANREPyVYILLLTARTESQDLIEGMDAGADDYLTKPF 126
PRK09390      52 VTDVRMPGIDGIELLRRLK-ARGSP-LPVIVMTGHGDVPLAVEAMKLGAIDFIEKPF 106

-1

138397

PRK11091

aerobic respiration control sensor protein ArcB; Provisional

false

true

false

779

0.001

39.20

13.61

5,20,525,41,62,566,27,89,594,14,103,610,8,114,618,13

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704  21 MRVLAAEDNPVFQSMLKTMLTRWGYEAVIARDGTEAWNILEgDGAPRLAILDWMMPGMDGVEICRRIRS-ANREPYVYIL 99
PRK11091     526 LNILLVEDIELNVIVARSLLEKLGNSVDVAMTGKDALEMFK-PGEYDLVLLDIQLPDMTGLDVARELRErYGREDLPPLV 604

                         90       100       110
                 ....*....|....*....|....*....|
gi 116623704 100 LLTA--RTESQDLIegmDAGADDYLTKPFN 127
PRK11091     605 ALTAnvLKDKQEYL---DAGMDDVLSKPLS 631

-1

138589

PRK11466

hybrid sensory histidine kinase TorS; Provisional

false

true

false

912

0.002

38.08

7.57

1,20,681,69

                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 116623704  21 MRVLAAEDNPVFQSMLKTMLTRWGYEAVIARDGTEAWNILEGDGAPRLAILDWMMPGMDGVEICRRIRS 89
PRK11466     682 LRLLLIEDNPLTQRITVEMLNTSGAQVVAVGNAAQALETLQNSEPFAAALVDFDLPDYDGITLARQLAQ 750

-1

137598

PRK09935

transcriptional regulator FimZ; Provisional

false

true

false

210

0.003

37.95

26.19

2,67,51,26,95,77,29

                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 116623704  68 LAILDWMMPGMDGVEICRRIRSANREpyVYILLLTARTESQDLIEGMDAGADDYLTK 124
PRK09935      52 LVILDIELPGTDGFTLLKRIKQIQET--VKVLFLSSKSECFYAGRAIRAGANGFVSK 106

-1

131961

TIGR02915

PEP_resp_reg

putative PEP-CTERM system response regulator

false

true

false

445

0.004

37.42

26.07

7,22,0,14,41,14,3,44,20,19,64,39,12,76,56,14,92,70,43,135,114,2

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116623704  23 VLAAEDNPVFQSMLktmltRWG---YEAVIARDGTEAWNILEGDgAPRLAILDWMMP-----GMDGVEICRRIRSAnrEP 94
TIGR02915      1 LLIVEDDLGLQKQL-----KWSfadYELAVAADRESAIALVRRH-EPAVVTLDLGLPpdadgASEGLAALQQILAI--AP 72

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 116623704  95 YVYILLLTARTESQDLIEGMDAGADDYLTKPFNAHELRVRI-RA 137
TIGR02915     73 DTKVIVITGNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVdRA 116

-1

active site	0	10	10	true	133472	cd01949	GGDEF
I-site	1	3	3	true	133472	cd01949	GGDEF
active site	0	8	8	true	29071	cd00156	REC
phosphorylation site	1	1	1	true	29071	cd00156	REC
intermolecular recognition site	2	5	5	true	29071	cd00156	REC
dimerization interface	3	3	3	true	29071	cd00156	REC