NCBI Conserved Domain Search

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Conserved domains on [gi\|111115185\|ref\|YP_709803.1\|]
hypothetical protein BAPKO_0370 [Borrelia afzelii PKo]

Graphical summary show options »	Show site features Horizontal zoom: ×	?



List of domain hits		?

References:

Marchler-Bauer A et al. (2009), "CDD: specific functional annotation with the Conserved Domain Database.", Nucleic Acids Res.37(D)205-10.

Marchler-Bauer A, Bryant SH (2004), "CD-Search: protein domain annotations on the fly.", Nucleic Acids Res.32(W)327-331.

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of the residues that compose this conserved feature have been mapped to the query sequence.

Click on the triangle to view details about the feature, including a multiple sequence alignment of your query sequence and the protein sequences used to curate the domain model, where hash marks (#) above the aligned sequences show the location of the conserved feature residues.

The thumbnail image, if present, provides an approximate view of the feature's location in 3 dimensions. Click on the triangle for interactive 3D structure viewing options.

This image shows a graphical summary of conserved domains identified on the query sequence. The Show Concise/Full Display button at the top of the page can be used to select the desired level of detail: only top scoring hits (labeled illustration) or all hits (labeled illustration).
Domains are color coded according to superfamilies to which they have been assigned. Hits with scores that pass a domain-specific threshold (specific hits) are drawn in bright colors. Others (non-specific hits) and superfamily placeholders are drawn in pastel colors.
if a domain or superfamily has been annotated with functional sites (conserved features), they are mapped to the query sequence and indicated through sets of triangles with the same color and shade of the domain or superfamily that provides the annotation.
Mouse over the colored bars or triangles to see descriptions of the domains and features. click on the bars or triangles to view your query sequence embedded in a multiple sequence alignment of the proteins used to develop the corresponding domain model.

The table lists conserved domains identified on the query sequence. Click on the plus sign (+) on the left to display full descriptions, alignments, and scores. Click on the PssmId to view the multiple sequence alignment of the proteins used to develop the corresponding domain model.

To view your query sequence embedded in that multiple sequence alignment, click on the colored bars in the Graphical Summary portion of the search results page, or click on the triangles, if present, that represent functional sites (conserved features) mapped to the query sequence.

Concise Display shows only the best scoring domain model, in each hit category listed below except non-specific hits, for each region on the query sequence. (labeled illustration)
Full Display shows all domain models, in each hit category below, that meet or exceed the RPS-BLAST threshold for statistical significance. (labeled illustration)
Four types of hits can be shown, as available, for each region on the query sequence:

specific hits meet or exceed a domain-specific e-value threshold (illustrated example) and represent a very high confidence that the query sequence belongs to the same protein family as the sequences use to create the domain model
non-specific hits meet or exceed the RPS-BLAST threshold for statistical significance (default E-value cutoff of 0.01, or an E-value selected by user via the advanced search options)
the domain superfamily to which the specific and non-specific hits belong
multi-domain models that were computationally detected and are likely to contain multiple single domains

The CD-Search help document provides more detail about the tool and its features.

Retrieve proteins that contain one or more of the domains present in the query sequence, using the Conserved Domain Architecture Retrieval Tool (CDART).

Modify your query to search against a different database and/or use advanced search options

30163

cd01948

EAL

EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.

EAL domain. This domain is found in diverse bacterial signaling proteins. It is called...

true

false

true

240

1e-46

183.49

98.33

1,434,2,236

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111115185 435 ILKAIKNDFFTLYYQKINPLKKNLKPKIEILTRLFDHMGKPIPNDQIFSLIDKYNLTVEVDKLVVKKALREYKSFVSKNG 514
cd01948        3 LRRALERGEFELYYQPIVDLRTGRIVGYEALLRWRHPEGGLISPAEFIPLAEETGLIVELGRWVLEEACRQLARWQAGGP 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111115185 515 IHVFSINISPYSLKSQNFRIFLRDTLLKSQIPLQNICLEITETGILENFEIINKYFQELKSFGIKLALDDFGSGHTSLSY 594
cd01948       83 DLRLSVNLSARQLRDPDFLDRLLELLAETGLPPRRLVLEITESALIDDLEEALATLRRLRALGVRIALDDFGTGYSSLSY 162

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 111115185 595 IKTLPIDLLKIDGSFIKAINSSEIDFVIIKSIKKIADTKNIKIIAEFVYNEEILKKINELEIDYGQGFLWHKPEPI 670
cd01948      163 LKRLPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAEGVETEEQLELLRELGCDYVQGYLFSRPLPA 238

cl00290

140582

EAL

EAL domain. This domain is found in diverse bacterial signaling proteins. It is called...

-1

32382

COG2200

Rtn

c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]

false

256

1e-50

196.70

91.80

2,434,7,83,518,90,152

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111115185 435 ILKAIKNDFFTLYYQKINPLKKNLKPKIEILTRLFDHMGKPIPNDQIFSLIDKYNLTVEVDKLVVKKALREYKSFVSKNG 514
COG2200        8 LRQALENGEFSLYYQPIVDLATGRIVGYEALLRWRHPDGGLISPGEFIPLAEETGLIVELGRWVLEEACRQLRTWPRAGP 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111115185 515 IHVfSINISPYSLKSQNFRIFLRDTLLKSQIPLQNICLEITETGILENFEIINKYFQELKSFGIKLALDDFGSGHTSLSY 594
COG2200       88 LRL-AVNLSPVQLRSPGLVDLLLRLLARLGLPPHRLVLEITESALIDDLDTALALLRQLRELGVRIALDDFGTGYSSLSY 166

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 111115185 595 IKTLPIDLLKIDGSFIKAINSSEIDFVIIKSIKKIADTKNIKIIAEFVYNEEILKKINELEIDYGQGFLWHKPEPI 670
COG2200      167 LKRLPPDILKIDRSFVRDLETDARDQAIVRAIVALAHKLGLTVVAEGVETEEQLDLLRELGCDYLQGYLFSRPLPA 242

cl00290

140582

EAL

EAL domain. This domain is found in diverse bacterial signaling proteins. It is called...

-1

128367

smart00052

EAL

Putative diguanylate phosphodiesterase

false

241

3e-45

178.56

97.93

1,434,3,236

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111115185 435 ILKAIKNDFFTLYYQKINPLKKNLKPKIEILTRLFDHMGKPIPNDQIFSLIDKYNLTVEVDKLVVKKALREYKSFVSKNG 514
smart00052     4 LRQALENGQFLLYYQPIVSLRTGRLVGVEALIRWQHPEGGIISPDEFIPLAEETGLIVPLGRWVLEQACQQLAEWQAQGP 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111115185 515 IHVFSINISPYSLKSQNFRIFLRDTLLKSQIPLQNICLEITETGILENFEIINKYFQELKSFGIKLALDDFGSGHTSLSY 594
smart00052    84 PLRISINLSARQLISPDLVPRVLELLEETGLPPQRLELEITESVLLDDDESAVATLQRLRELGVRIALDDFGTGYSSLSY 163

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 111115185 595 IKTLPIDLLKIDGSFIKAINSSEIDFVIIKSIKKIADTKNIKIIAEFVYNEEILKKINELEIDYGQGFLWHKPEPI 670
smart00052   164 LKRLPVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAEGVETPEQLDLLRSLGCDYGQGYLFSRPLPL 239

cl00290

140582

EAL

EAL domain. This domain is found in diverse bacterial signaling proteins. It is called...

-1

109613

pfam00563

EAL

EAL domain

false

236

2e-39

159.12

98.73

5,434,3,68,502,74,36,539,110,27,567,137,50,618,187,49

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111115185 435 ILKAIKNDFFTLYYQKINPLKKNLKPKIEILTRLFDHMGKPIPNDQIFSLIDKYNLTVEVDKLVVKKA---LREYKSFVS 511
pfam00563      4 LREALENGEFSLYFQPIVDLRTGKVLGYEALLRWQHPDGGLIPPDEFLPLAERLGLIAELDRWVLEKAlaqLAEWRGNAL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111115185 512 KNGIHVFSINISPYSLKSQNFRIFLRDtLLKSQIPLQNICLEITETGILENFEIInKYFQELKSFGIKLALDDFGSGHTS 591
pfam00563     84 LPPDLPLSVNLSPASLLDPSFLEALLA-LKQGGLPPSRLVLEITESDLDEDLRLL-EALARLRSLGFRLALDDFGTGYSS 161

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 111115185 592 LSYIKTLPIDLLKIDGSFIKAINSSEiDFVIIKSIKKIADTKNIKIIAEFVYNEEILKKINELEIDYGQGFLWHKP 667
pfam00563    162 LSYLSRLPPDYIKIDRSFIKDLSDPE-SRALLRALIALARELGIKVVAEGVETEEQLELLKELGIDYVQGYLFSKP 236

cl00290

140582

EAL

EAL domain. This domain is found in diverse bacterial signaling proteins. It is called...

-1

137515

PRK09776

putative sensor protein; Provisional

false

true

false

1116

7e-32

134.06

20.88

3,437,871,29,466,901,51,518,952,152

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111115185  438 AIKNDFFTLYYQKINPLKKNLKPKIEILT-RLFDHMGKPIPNDQIFSLIDKYNLTVEVDKLVVKKALREYKSFVSKNGIH 516
PRK09776      872 MLEENQLMLQAQEIASPRIPEARNLWLISlRLWDCEGEIIDEGAFRPAAEDPALMHALDRWVIHELFQQGARAVASKGLS 951

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111115185  517 VfSINISPYSLKSQNFRIFLRDTLLKSQIPLQNICLEITETGILENFEIINKYFQELKSFGIKLALDDFGSGHTSLSYIK 596
PRK09776      952 I-AIPLSVASLSSATLLPFLLEQLENSPLPPRLLHLEITETALLNHAEAASRLVQKLRLAGCRVVLDDFGRGLSSFNYLK 1030

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 111115185  597 TLPIDLLKIDGSFIKAINSSEIDFVIIKSIKKIADTKNIKIIAEFVYNEEILKKINELEIDYGQGFLWHKPEPI 670
PRK09776     1031 AFMADYLKIDGELCANLQGNLMDEMLVSIINGIAQRLGMKTIAGPVELPLTLDTLSGIGVDLAQGYVIGRPQPL 1104

-1

34551

COG4943

Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]

Predicted signal transduction protein containing sensor and EAL domains [Signal...

false

true

false

524

1e-26

116.60

44.27

3,436,274,125,561,402,8,573,410,96

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111115185 437 KAIKNDFFTLYYQKINPLKKNLKPKIEILTRLFDHMGKPIPNDQIFSLIDKYNLTVEVDKLVVKKALREYKSFVSKNGIH 516
COG4943      275 RAIERRELCVHYQPIVDLATGKCVGAEALARWPQEDGTVVSPDVFIPLAEESGMIEQITDYVIRNVFRDLGDLLRQHRDL 354

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111115185 517 VFSINISPYSLKSQNFRIFLRDTLLKSQIPLQNICLEITETGILE---NFEIINKYfqelKSFGIKLALDDFGSGHTSLS 593
COG4943      355 HVSINLSASDLASPRLIDRLNRKLAQYQVRPQQIALELTERTFADpkkMTPIILRL----REAGHEIYIDDFGTGYSNLH 430

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 111115185 594 YIKTLPIDLLKIDGSFIKAINSSEIDFVIIKSIKKIADTKNIKIIAEFVYNEEILKKINELEIDYGQGFLWHKPEP 669
COG4943      431 YLQSLPVDALKIDKSFVDTLGTDSASHLIAPHIIEMAKSLGLKIVAEGVETEEQVDWLRKRGVHYGQGWLFSKALP 506

-1

34606

COG5001

Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Signal transduction mechanisms]

Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF...

false

true

false

663

1e-25

113.58

34.24

4,438,411,6,445,417,64,511,481,6,518,487,151

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111115185 439 IKNDFFtLYYQKINPLKKNLKPKIEILTRLFDHMGKPIPNDQIFSLIDKYNLTVEVDKLVVKKALREYKSFvsKNGIHVf 518
COG5001      412 LEQELS-VHFQPIVDIVSGKTIALEALARWHSPEIGPVPPDVFIGIAERSGQIVELTRLLLAKALREARAW--PMDVRV- 487

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111115185 519 SINISPYSLKSQNFRIFLRDTLLKSQIPLQNICLEITETGILENFEIINKYFQELKSFGIKLALDDFGSGHTSLSYIKTL 598
COG5001      488 SINLSARDLASMENVRRLLAIVSESCIAPHRLDFEITETAIVCDFDQARDALAALHELGVRTALDDFGTGYSSLSHLRAL 567

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 111115185 599 PIDLLKIDGSFIKAINSSEIDFVIIKSIKKIADTKNIKIIAEFVYNEEILKKINELEIDYGQGFLWHKPEP 669
COG5001      568 PLDKIKIDRSFVSDLEENPTSEDIVRTVLQLGRNLRMECVVEGVETEAQRDRVAALGATVMQGYHYARPMP 638

-1

139666

PRK13561

putative phosphodiesterase; Provisional

false

true

false

651

4e-22

101.77

36.25

5,434,404,40,474,445,7,482,452,113,595,568,20,618,588,52

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111115185 435 ILKAIKNDFFTLYYQKINPLKKNLKPKIEILTRLFDHMGK-PIPNDQIfSLIDKYNLTVEVDKLVVKKALREYKSFVSKN 513
PRK13561     405 ILNALENHQFAIWLQPQVEMRSGKLVSAEALLRMQQPDGSwDLPDGLI-DRIESCGLMVTVGHWVLEESCRLLAAWQERG 483

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111115185 514 GIHVFSINISPYSLKSQNFRIFLRDTLLKSQIPLQNICLEITETGILENFEIINKYFQELKSFGIKLALDDFGSGHTSLS 593
PRK13561     484 IMLPLSVNLSALQLMHPNMVADMLELLTRYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRIALDDFGMGYAGLR 563

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111115185 594 YI---KTLPIDLLKIDGSFIKAINSseiDFVIIKSIKKIADTKNIKIIAEFVYNEEILKKINELEIDYGQGFLWHKPEPI 670
PRK13561     564 QLqhmKSLPIDVLKIDKMFVDGLPE---DSSMVAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGVAQGFLFARPLPI 640

-1

137662

PRK10060

RNase II stability modulator; Provisional

false

true

false

663

1e-20

96.72

37.25

6,426,399,2,429,401,7,436,414,25,462,439,50,513,489,4,517,494,152

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111115185 427 NQnKIFQYIL------KAIKNDFFTLYYQKINPLKKNLKPKiEILTRLFDHMGKPIPNDQIFSLIDKYNLTVEVDKLVVK 500
PRK10060     400 NQ-RVFEYLWldtnlrKALENDQLVIHYQPKITWRGEVRSL-EALVRWQSPERGLIPPLEFISYAEESGLIVPLGRWVIL 477

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111115185 501 KALREYKSFVSKnGIHV-FSINISPYSLKSQNFRIFLRDTLLKSQIPLQNICLEITETGILENFEIINKYFQELKSFGIK 579
PRK10060     478 DVVRQAAKWRDK-GINLrVAVNVSARQLADQTIFTALKQVLQELNFEYCPIDVELTESCLIENEELALSVIQQFSQLGAQ 556

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111115185 580 LALDDFGSGHTSLSYIKTLPIDLLKIDGSFIKAINSSEIDFVIIKSIKKIADTKNIKIIAEFVYNEEILKKINELEIDYG 659
PRK10060     557 VHLDDFGTGYSSLSQLARFPIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVETAKEDAFLTKNGVNER 636

                        250
                 ....*....|
gi 111115185 660 QGFLWHKPEP 669
PRK10060     637 QGFLFAKPMP 646

-1

138768

PRK11829

biofilm formation regulator HmsP; Provisional

false

true

false

728

6e-20

94.38

32.28

3,434,477,160,594,640,21,618,661,51

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111115185 435 ILKAIKNDFFTLYYQKINPLKKNLKPKIEILTRLFDHMGKPIPNDQIFSLIDKYNLTVEVDKLVVKKALREYKSFVSKNG 514
PRK11829     478 LLQAIENHDFTLFLQPQWDMKRQQVIGAEALLRWCQPDGSYVLPSGFVHFAEEEGMMVPLGNWVLEEACRILADWKARGV 557

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111115185 515 IHVFSINISPYSLKSQNFRIFLRDTLLKSQIPLQNICLEITETGILENFEIINKYFQELKSFGIKLALDDFGSGHTSLSY 594
PRK11829     558 SLPLSVNISGLQVQNKQFLPHLKTLISHYHIDPQQLLLEITETAQIQDLDEALRLLRELQGLGLLIALDDFGIGYSSLRY 637

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 111115185 595 ---IKTLPIDLLKIDGSFIKAINSseiDFVIIKSIKKIADTKNIKIIAEFVYNEEILKKINELEIDYGQGFLWHKPEP 669
PRK11829     638 lnhLKSLPIHMIKLDKSFVKNLPE---DDAIARIISCVSDVLKVRVMAEGVETEEQRQWLLEHGIQCGQGFLFSPPLP 712

-1

138538

PRK11359

cAMP phosphodiesterase; Provisional

false

true

false

799

2e-19

92.98

29.29

2,436,549,77,513,627,156

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111115185 437 KAIKNDFFTLYYQKINPLKKNLKPKIEILTRLFDHMGKPIPNDQIFSLIDKYNLTVEVDKLVVKKALREYKSFVSKN-GI 515
PRK11359     550 EAISNNQLKLVYQPQIFAETGELYGIEALARWHDPLHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNiHI 629

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111115185 516 HVFSINISPYSLKSQNFRIFLRDTLLKSQIPLQNICLEITETGILENFEIINKYFQELKSFGIKLALDDFGSGHTSLSYI 595
PRK11359     630 PALSVNLSALHFRSNQLPNQVSDAMHAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMGVGLSVDDFGTGFSGLSRL 709

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 111115185 596 KTLPIDLLKIDGSFIKAINSSEIDFVIIKSIKKIADTKNIKIIAEFVYNEEILKKINELEIDYGQGFLWHKPEP 669
PRK11359     710 VSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTVVAEGVETKEQFEMLRKIHCRVIQGYFFSRPLP 783

-1

137979

PRK10551

hypothetical protein; Provisional

false

true

false

518

3e-18

88.57

45.56

10,434,267,33,468,300,3,471,305,3,475,308,20,495,332,14,511,346,5,517,351,20,539,371,9,548,382,18,567,400,103

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111115185 435 ILKAIKNDFFTLYYQKINPLKKNLKPKIEILTRlFDH--MGKpIPNDQIFSLIDKYNLTVEVD----KLVVKKALREYKS 508
PRK10551     268 ILTAIKREQFYVVYQPVVDTQTLRVTGLEVLLR-WRHptAGE-IPPDAFINYAEAQKLIVPLTqhlfELIARDAAELQKV 345

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111115185 509 FvsKNGIHvFSINISPYSLKSQNFRIFLRdtLLKSQIPLQ--NICLEITETGILENFEIInKYFQELKSFGIKLALDDFG 586
PRK10551     346 L--PVGAK-LGINIAPAHLHSDSFKADVQ--RLLASLPADhfQIVLEITERDMLQEEEAL-KLFAWLHSQGIEIAIDDFG 419

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111115185 587 SGHTSLSYIKTLPIDLLKIDGSFIKAINSSEIDFVIIKSIKKIADTKNIKIIAEFVYNEEILKKINELEIDYGQGFLWHK 666
PRK10551     420 TGHSALIYLERFTLDYLKIDRGFINAIGTETVTSPVLDAVLTLAKRLNMLTVAEGVETPEQARWLREHGVNFLQGYWISR 499


                 ....
gi 111115185 667 PEPI 670
PRK10551     500 PLPL 503

-1

138376

PRK11059

regulatory protein CsrD; Provisional

false

true

false

642

4e-11

64.90

25.86

4,447,419,60,509,479,32,541,514,3,546,517,68

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111115185 448 YQKINPLKKNLKPKIEILTRLFDHMGKPIPNDQIFSLIDKYNLTVEVDKLVVKKALREYKsfVSKNGIHVFSINISPYSL 527
PRK11059     420 YQQPVVTRDGQVHHRELMCRIRDGQGNEVRAAEFMPMVLQCGLSEQYDRQVIERVLPLLS--YWPEESQNLSINLSVDSL 497

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111115185 528 KSQNFRIFLRDTLL---KSQipLQNICLEITETGILENFEIINKYFQELKSFGIKLALDDFGSGHTSLSYIKTLPIDLLK 604
PRK11059     498 LSRAFQRWLRDTLLqceRSQ--RKRLIFELAEADVVQHIDRLRPVLRMLRGLGCRLAVDQAGLTVVSTSYIKELNVELIK 575

                        170
                 ....*....|
gi 111115185 605 IDGSFIKAIN 614
PRK11059     576 LHPSLVRNIH 585

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