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Conserved domains on  [gi|1431726308|ref|XP_025651855|]
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uncharacterized protein LOC112747863 isoform X2 [Arachis hypogaea]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
put_zinc_LRP1 super family cl31126
putative zinc finger domain, LRP1 type; This model represents a putative zinc finger domain ...
 35-70 3.85e-05

putative zinc finger domain, LRP1 type; This model represents a putative zinc finger domain found in plants. Arabidopsis thaliana has at least 10 distinct members. Proteins containing this domain, including LRP1, generally share the same size, about 300 amino acids, and architecture. This 43-residue domain, and a more C-terminal companion domain of similar size, appear as tightly conserved islands of sequence similarity. The remainder consists largely of low-complexity sequence. Several animal proteins have regions with matching patterns of Cys, Gly, and His residues. These are not included in the model but score between trusted and noise cutoffs.


The actual alignment was detected with superfamily member TIGR01623:

Pssm-ID: 130684  Cd Length: 43  Bit Score: 40.65  E-value: 3.85e-05
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1431726308  35 KCKQCGNVARSRCPFESCKSCCSRNQNPCHIHVLKT 70
Cdd:TIGR01623   1 VCQDCGNQAKKECLFERCRTCCKSRGFHCVTHVKST 36
DUF702 super family cl38179
Domain of unknown function (DUF702); Members of this family are found in various putative zinc ...
 36-113 1.35e-04

Domain of unknown function (DUF702); Members of this family are found in various putative zinc finger proteins.


The actual alignment was detected with superfamily member pfam05142:

Pssm-ID: 461560 [Multi-domain]  Cd Length: 154  Bit Score: 41.59  E-value: 1.35e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431726308  36 CKQCGNVARSRCPFESCKSCC-SRNQNpCHIHVlkTSTTLPdkA------PSSSATPIEQQSVEPSQSSTASRVASLRQL 108
Cdd:pfam05142   5 CQDCGNQAKKDCPHMRCRTCCkSRGFD-CPTHV--KSTWVP--AakrrerQQQLAALQQQQQAVSAGSSGGSGSGSKRPR 79


                  ....*
gi 1431726308 109 SNSFA 113
Cdd:pfam05142  80 EGPSA 84
 
Name Accession Description Interval E-value
put_zinc_LRP1 TIGR01623
putative zinc finger domain, LRP1 type; This model represents a putative zinc finger domain ...
 35-70 3.85e-05

putative zinc finger domain, LRP1 type; This model represents a putative zinc finger domain found in plants. Arabidopsis thaliana has at least 10 distinct members. Proteins containing this domain, including LRP1, generally share the same size, about 300 amino acids, and architecture. This 43-residue domain, and a more C-terminal companion domain of similar size, appear as tightly conserved islands of sequence similarity. The remainder consists largely of low-complexity sequence. Several animal proteins have regions with matching patterns of Cys, Gly, and His residues. These are not included in the model but score between trusted and noise cutoffs.


Pssm-ID: 130684  Cd Length: 43  Bit Score: 40.65  E-value: 3.85e-05
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1431726308  35 KCKQCGNVARSRCPFESCKSCCSRNQNPCHIHVLKT 70
Cdd:TIGR01623   1 VCQDCGNQAKKECLFERCRTCCKSRGFHCVTHVKST 36
DUF702 pfam05142
Domain of unknown function (DUF702); Members of this family are found in various putative zinc ...
 36-113 1.35e-04

Domain of unknown function (DUF702); Members of this family are found in various putative zinc finger proteins.


Pssm-ID: 461560 [Multi-domain]  Cd Length: 154  Bit Score: 41.59  E-value: 1.35e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431726308  36 CKQCGNVARSRCPFESCKSCC-SRNQNpCHIHVlkTSTTLPdkA------PSSSATPIEQQSVEPSQSSTASRVASLRQL 108
Cdd:pfam05142   5 CQDCGNQAKKDCPHMRCRTCCkSRGFD-CPTHV--KSTWVP--AakrrerQQQLAALQQQQQAVSAGSSGGSGSGSKRPR 79


                  ....*
gi 1431726308 109 SNSFA 113
Cdd:pfam05142  80 EGPSA 84
 
Name Accession Description Interval E-value
put_zinc_LRP1 TIGR01623
putative zinc finger domain, LRP1 type; This model represents a putative zinc finger domain ...
 35-70 3.85e-05

putative zinc finger domain, LRP1 type; This model represents a putative zinc finger domain found in plants. Arabidopsis thaliana has at least 10 distinct members. Proteins containing this domain, including LRP1, generally share the same size, about 300 amino acids, and architecture. This 43-residue domain, and a more C-terminal companion domain of similar size, appear as tightly conserved islands of sequence similarity. The remainder consists largely of low-complexity sequence. Several animal proteins have regions with matching patterns of Cys, Gly, and His residues. These are not included in the model but score between trusted and noise cutoffs.


Pssm-ID: 130684  Cd Length: 43  Bit Score: 40.65  E-value: 3.85e-05
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1431726308  35 KCKQCGNVARSRCPFESCKSCCSRNQNPCHIHVLKT 70
Cdd:TIGR01623   1 VCQDCGNQAKKECLFERCRTCCKSRGFHCVTHVKST 36
DUF702 pfam05142
Domain of unknown function (DUF702); Members of this family are found in various putative zinc ...
 36-113 1.35e-04

Domain of unknown function (DUF702); Members of this family are found in various putative zinc finger proteins.


Pssm-ID: 461560 [Multi-domain]  Cd Length: 154  Bit Score: 41.59  E-value: 1.35e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1431726308  36 CKQCGNVARSRCPFESCKSCC-SRNQNpCHIHVlkTSTTLPdkA------PSSSATPIEQQSVEPSQSSTASRVASLRQL 108
Cdd:pfam05142   5 CQDCGNQAKKDCPHMRCRTCCkSRGFD-CPTHV--KSTWVP--AakrrerQQQLAALQQQQQAVSAGSSGGSGSGSKRPR 79


                  ....*
gi 1431726308 109 SNSFA 113
Cdd:pfam05142  80 EGPSA 84
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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