NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|697123549|ref|XP_009615772|]
View 

probable transcription factor KAN2 isoform X1 [Nicotiana tomentosiformis]

Protein Classification

SANT/Myb-like DNA-binding domain-containing protein( domain architecture ID 10019308)

SANT/Myb-like DNA-binding domain-containing protein binds DNA and may function as a transcription factor

CATH:  1.20.58.1880
Gene Ontology:  GO:0003677|GO:0006355|GO:0003700
PubMed:  8882580
SCOP:  4000317

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
myb_SHAQKYF TIGR01557
myb-like DNA-binding domain, SHAQKYF class; This model describes a DNA-binding domain ...
 224-277 5.32e-21

myb-like DNA-binding domain, SHAQKYF class; This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.


:

Pssm-ID: 130620 [Multi-domain]  Cd Length: 57  Bit Score: 85.53  E-value: 5.32e-21
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 697123549  224 PRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 277
Cdd:TIGR01557   2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRL 55
 
Name Accession Description Interval E-value
myb_SHAQKYF TIGR01557
myb-like DNA-binding domain, SHAQKYF class; This model describes a DNA-binding domain ...
 224-277 5.32e-21

myb-like DNA-binding domain, SHAQKYF class; This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.


Pssm-ID: 130620 [Multi-domain]  Cd Length: 57  Bit Score: 85.53  E-value: 5.32e-21
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 697123549  224 PRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 277
Cdd:TIGR01557   2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRL 55
PLN03162 PLN03162
golden-2 like transcription factor; Provisional
 222-277 2.85e-10

golden-2 like transcription factor; Provisional


Pssm-ID: 178707 [Multi-domain]  Cd Length: 526  Bit Score: 62.11  E-value: 2.85e-10
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 697123549 222 RAPRMRWTSSLHARFVHAVELLGgHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 277
Cdd:PLN03162 234 KKAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYRS 288
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 225-276 3.05e-05

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 40.95  E-value: 3.05e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 697123549  225 RMRWTSSLHARFVHAVELLGGHeratPKSVLELMdvKDLTLAHVKSHLQMYR 276
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNR----WKKIAKLL--PGRTDNQCKNRWQNYL 46
 
Name Accession Description Interval E-value
myb_SHAQKYF TIGR01557
myb-like DNA-binding domain, SHAQKYF class; This model describes a DNA-binding domain ...
 224-277 5.32e-21

myb-like DNA-binding domain, SHAQKYF class; This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.


Pssm-ID: 130620 [Multi-domain]  Cd Length: 57  Bit Score: 85.53  E-value: 5.32e-21
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 697123549  224 PRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 277
Cdd:TIGR01557   2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRL 55
PLN03162 PLN03162
golden-2 like transcription factor; Provisional
 222-277 2.85e-10

golden-2 like transcription factor; Provisional


Pssm-ID: 178707 [Multi-domain]  Cd Length: 526  Bit Score: 62.11  E-value: 2.85e-10
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 697123549 222 RAPRMRWTSSLHARFVHAVELLGgHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 277
Cdd:PLN03162 234 KKAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYRS 288
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 225-276 3.05e-05

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 40.95  E-value: 3.05e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 697123549  225 RMRWTSSLHARFVHAVELLGGHeratPKSVLELMdvKDLTLAHVKSHLQMYR 276
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNR----WKKIAKLL--PGRTDNQCKNRWQNYL 46
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH