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Conserved domains on  [gi|1119999996|ref|WP_072875435|]
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MULTISPECIES: GIY-YIG nuclease family protein [Vibrio]

Protein Classification

GIY-YIG nuclease family protein( domain architecture ID 10603114)

GIY-YIG nuclease family protein

CATH:  3.40.1440.10
Gene Ontology:  GO:0004518
PubMed:  16646971
SCOP:  3000597

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
MUG113 pfam13455
Meiotically up-regulated gene 113; This is a family of fungal proteins found to be ...
 27-90 2.85e-09

Meiotically up-regulated gene 113; This is a family of fungal proteins found to be up-regulated in meiosis.


:

Pssm-ID: 372608  Cd Length: 73  Bit Score: 50.75  E-value: 2.85e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1119999996  27 KIGLTNDPIRRRQELHTTGTAELMYVQQLWLVEDMGRAEKIAHDRMAGHRVNDKREFFHLVTED 90
Cdd:pfam13455   2 KIGRTRNVEKRLKELNSQSPFKFDVVASYESTNDARKLERLLHRELKEYRLNGGNEWFKLNLEQ 65
 
Name Accession Description Interval E-value
MUG113 pfam13455
Meiotically up-regulated gene 113; This is a family of fungal proteins found to be ...
 27-90 2.85e-09

Meiotically up-regulated gene 113; This is a family of fungal proteins found to be up-regulated in meiosis.


Pssm-ID: 372608  Cd Length: 73  Bit Score: 50.75  E-value: 2.85e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1119999996  27 KIGLTNDPIRRRQELHTTGTAELMYVQQLWLVEDMGRAEKIAHDRMAGHRVNDKREFFHLVTED 90
Cdd:pfam13455   2 KIGRTRNVEKRLKELNSQSPFKFDVVASYESTNDARKLERLLHRELKEYRLNGGNEWFKLNLEQ 65
T5orf172 smart00974
This entry represents the putative helicase A859L;
20-86 5.09e-06

This entry represents the putative helicase A859L;


Pssm-ID: 214947  Cd Length: 80  Bit Score: 42.32  E-value: 5.09e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119999996   20 TTNPNEIKIGLTNDPIRRR-QEL-HTTGTAELMYVQQLWLVEDMGRAEKIAHDRMAGH-RVNDKREFFHL 86
Cdd:smart00974   1 SKNEGLVKIGYTTRDVERRlKELsPTASVPLLFEVHALIEVEDARKLEALLHRALADAgRRNPHREWFRL 70
 
Name Accession Description Interval E-value
MUG113 pfam13455
Meiotically up-regulated gene 113; This is a family of fungal proteins found to be ...
 27-90 2.85e-09

Meiotically up-regulated gene 113; This is a family of fungal proteins found to be up-regulated in meiosis.


Pssm-ID: 372608  Cd Length: 73  Bit Score: 50.75  E-value: 2.85e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1119999996  27 KIGLTNDPIRRRQELHTTGTAELMYVQQLWLVEDMGRAEKIAHDRMAGHRVNDKREFFHLVTED 90
Cdd:pfam13455   2 KIGRTRNVEKRLKELNSQSPFKFDVVASYESTNDARKLERLLHRELKEYRLNGGNEWFKLNLEQ 65
T5orf172 pfam10544
T5orf172 domain; This domain was identified by Iyer and colleagues.
 12-98 1.80e-08

T5orf172 domain; This domain was identified by Iyer and colleagues.


Pssm-ID: 463143  Cd Length: 99  Bit Score: 49.39  E-value: 1.80e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119999996  12 GYIYIFVNTTNPNE-IKIGLTNDPIRRRQELHTTGTA-----ELMYVQQLWLVEDMGRAEKIAHDRMAGHRVN-----DK 80
Cdd:pfam10544   1 GYIYILTNPSNPGLiFKIGRTSNLQRRLRELSKSSTSvpfefSVIYEIKVRKVPNAFRLERLIHKELADFRYRvncpcGH 80

                          90
                  ....*....|....*...
gi 1119999996  81 REFFhLVTEDMAIDQINL 98
Cdd:pfam10544  81 REWF-EVSLEEVDEIVKR 97
T5orf172 smart00974
This entry represents the putative helicase A859L;
20-86 5.09e-06

This entry represents the putative helicase A859L;


Pssm-ID: 214947  Cd Length: 80  Bit Score: 42.32  E-value: 5.09e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1119999996   20 TTNPNEIKIGLTNDPIRRR-QEL-HTTGTAELMYVQQLWLVEDMGRAEKIAHDRMAGH-RVNDKREFFHL 86
Cdd:smart00974   1 SKNEGLVKIGYTTRDVERRlKELsPTASVPLLFEVHALIEVEDARKLEALLHRALADAgRRNPHREWFRL 70
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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