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Conserved domains on  [gi|750578474|ref|WP_040860343|]
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NAD(P)/FAD-dependent oxidoreductase [Nocardia niigatensis]

Protein Classification

NAD(P)/FAD-dependent oxidoreductase( domain architecture ID 11449697)

NAD(P)/FAD-dependent oxidoreductase catalyzes the transfer of electrons from one molecule, the electron donor or reductant, to another molecule, the electron acceptor or oxidant

CATH:  3.50.50.60
EC:  1.14.13.-
Gene Ontology:  GO:0050660|GO:0050661
SCOP:  4000117

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
CzcO COG2072
Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ...
 3-443 1.92e-151

Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ion transport and metabolism];


:

Pssm-ID: 441675 [Multi-domain]  Cd Length: 414  Bit Score: 437.76  E-value: 1.92e-151
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750578474   3 AARRPRIVIIGAGVSGIASAITLQRNGFhDFVILEKGSDVGGVWHWNHYPGLTCDVPSQLYQFGFAPKPDWSHIFAPGPE 82
Cdd:COG2072    3 ATEHVDVVVIGAGQAGLAAAYHLRRAGI-DFVVLEKADDVGGTWRDNRYPGLRLDTPSHLYSLPFFPNWSDDPDFPTGDE 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750578474  83 IQRYLADVVERFGLRAHLRVNSEVVAATF--TGAGWVVETGDGNRYEADFVIAATGVLHHPAVPELPGLSEFTGEVLHTA 160
Cdd:COG2072   82 ILAYLEAYADKFGLRRPIRFGTEVTSARWdeADGRWTVTTDDGETLTARFVVVATGPLSRPKIPDIPGLEDFAGEQLHSA 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750578474 161 RWDDSVRTSGRRIAVIGTGSTGVQVVSALQPEAERVTHFVRSPQWViwapmqIPQPALVgavlnklPQVNRALYQAGMtg 240
Cdd:COG2072  162 DWRNPVDLAGKRVLVVGTGASAVQIAPELARVAAHVTVFQRTPPWV------LPRPNYD-------PERGRPANYLGL-- 226

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750578474 241 arlftdvVTRPSWRRRAVQEYARLSLRAQILQPSLrEQLTPDYEPLCKRQVLSGTYYRALRARNAELVTTAIEEVTPTGI 320
Cdd:COG2072  227 -------EAPPALNRRDARAWLRRLLRAQVKDPEL-GLLTPDYPPGCKRPLLSTDYYEALRRGNVELVTGGIERITEDGV 298

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750578474 321 RTADGRHHDLDMIVLATGFRAH-DYMRPMNLTGREDISiddawakGPRAYRMTAIPGFPNFFtVLGPHSPTGSIPLHHAA 399
Cdd:COG2072  299 VFADGTEHEVDVIVWATGFRADlPWLAPLDVRGRDGRS-------GPRAYLGVVVPGFPNLF-FLGPNSPSGHSSLTLGA 370

                        410       420       430       440
                 ....*....|....*....|....*....|....*....|....
gi 750578474 400 EVTARYIAKWIQRWTTGEFDTVEVTEDATARFESEVAAAMGPTV 443
Cdd:COG2072  371 ERQARYIARLIAHMRRRGAAAIEVRPEAEDAFNARLQRRAARTV 414
 
Name Accession Description Interval E-value
CzcO COG2072
Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ...
 3-443 1.92e-151

Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ion transport and metabolism];


Pssm-ID: 441675 [Multi-domain]  Cd Length: 414  Bit Score: 437.76  E-value: 1.92e-151
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750578474   3 AARRPRIVIIGAGVSGIASAITLQRNGFhDFVILEKGSDVGGVWHWNHYPGLTCDVPSQLYQFGFAPKPDWSHIFAPGPE 82
Cdd:COG2072    3 ATEHVDVVVIGAGQAGLAAAYHLRRAGI-DFVVLEKADDVGGTWRDNRYPGLRLDTPSHLYSLPFFPNWSDDPDFPTGDE 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750578474  83 IQRYLADVVERFGLRAHLRVNSEVVAATF--TGAGWVVETGDGNRYEADFVIAATGVLHHPAVPELPGLSEFTGEVLHTA 160
Cdd:COG2072   82 ILAYLEAYADKFGLRRPIRFGTEVTSARWdeADGRWTVTTDDGETLTARFVVVATGPLSRPKIPDIPGLEDFAGEQLHSA 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750578474 161 RWDDSVRTSGRRIAVIGTGSTGVQVVSALQPEAERVTHFVRSPQWViwapmqIPQPALVgavlnklPQVNRALYQAGMtg 240
Cdd:COG2072  162 DWRNPVDLAGKRVLVVGTGASAVQIAPELARVAAHVTVFQRTPPWV------LPRPNYD-------PERGRPANYLGL-- 226

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750578474 241 arlftdvVTRPSWRRRAVQEYARLSLRAQILQPSLrEQLTPDYEPLCKRQVLSGTYYRALRARNAELVTTAIEEVTPTGI 320
Cdd:COG2072  227 -------EAPPALNRRDARAWLRRLLRAQVKDPEL-GLLTPDYPPGCKRPLLSTDYYEALRRGNVELVTGGIERITEDGV 298

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750578474 321 RTADGRHHDLDMIVLATGFRAH-DYMRPMNLTGREDISiddawakGPRAYRMTAIPGFPNFFtVLGPHSPTGSIPLHHAA 399
Cdd:COG2072  299 VFADGTEHEVDVIVWATGFRADlPWLAPLDVRGRDGRS-------GPRAYLGVVVPGFPNLF-FLGPNSPSGHSSLTLGA 370

                        410       420       430       440
                 ....*....|....*....|....*....|....*....|....
gi 750578474 400 EVTARYIAKWIQRWTTGEFDTVEVTEDATARFESEVAAAMGPTV 443
Cdd:COG2072  371 ERQARYIARLIAHMRRRGAAAIEVRPEAEDAFNARLQRRAARTV 414
Pyr_redox_3 pfam13738
Pyridine nucleotide-disulphide oxidoreductase;
18-205 8.63e-19

Pyridine nucleotide-disulphide oxidoreductase;


Pssm-ID: 404603 [Multi-domain]  Cd Length: 296  Bit Score: 86.51  E-value: 8.63e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750578474   18 GIASAITLQRNGFHDFVILEKGSdVGGVWHwnHYPG----LTCDVPSQLYQFGFAP------KPDWSH--IFAPGPEIQR 85
Cdd:pfam13738   3 GIGCAIALKKAGLEDYLILEKGN-IGNSFY--RYPThmtfFSPSFTSNGFGIPDLNaispgtSPAFTFnrEHPSGNEYAE 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750578474   86 YLADVVERFGLRAHLrvNSEVVAATFTGAGWVVETgDGNRYEADFVIAATGVLHHPAVPELPGLSEFTGEVLHtarWDDs 165
Cdd:pfam13738  80 YLRRVADHFELPINL--FEEVTSVKKEDDGFVVTT-SKGTYQARYVIIATGEFDFPNKLGVPELPKHYSYVKD---FHP- 152

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 750578474  166 vrTSGRRIAVIGTGSTGVQVvsALQPEAE--RVTHFVRSPQW 205
Cdd:pfam13738 153 --YAGQKVVVIGGYNSAVDA--ALELVRKgaRVTVLYRGSEW 190
PLN02172 PLN02172
flavin-containing monooxygenase FMO GS-OX
 1-218 1.44e-09

flavin-containing monooxygenase FMO GS-OX


Pssm-ID: 215116 [Multi-domain]  Cd Length: 461  Bit Score: 59.88  E-value: 1.44e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750578474   1 MGAARRP----RIVIIGAGVSGIASAITLQRNGfHDFVILEKGSDVGGVW--------------------HWNHYPGLTC 56
Cdd:PLN02172   1 MAPAQNPinsqHVAVIGAGAAGLVAARELRREG-HTVVVFEREKQVGGLWvytpksesdplsldptrsivHSSVYESLRT 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750578474  57 DVPSQ---LYQFGFAPKPDW----SHIFAPGPEIQRYLADVVERFGLRAHLRVNSEVVAATFTGAGWVVETGDGNRYEA- 128
Cdd:PLN02172  80 NLPREcmgYRDFPFVPRFDDesrdSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKd 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750578474 129 ---DFVIAATGVLHHPAVPELPGLSEFTGEVLHTARWDDSVRTSGRRIAVIGTGSTGVQVVSALQPEAERVTHFVRSPQW 205
Cdd:PLN02172 160 eifDAVVVCNGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRASES 239

                        250
                 ....*....|...
gi 750578474 206 VIWAPMQIPQPAL 218
Cdd:PLN02172 240 DTYEKLPVPQNNL 252
 
Name Accession Description Interval E-value
CzcO COG2072
Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ...
 3-443 1.92e-151

Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ion transport and metabolism];


Pssm-ID: 441675 [Multi-domain]  Cd Length: 414  Bit Score: 437.76  E-value: 1.92e-151
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750578474   3 AARRPRIVIIGAGVSGIASAITLQRNGFhDFVILEKGSDVGGVWHWNHYPGLTCDVPSQLYQFGFAPKPDWSHIFAPGPE 82
Cdd:COG2072    3 ATEHVDVVVIGAGQAGLAAAYHLRRAGI-DFVVLEKADDVGGTWRDNRYPGLRLDTPSHLYSLPFFPNWSDDPDFPTGDE 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750578474  83 IQRYLADVVERFGLRAHLRVNSEVVAATF--TGAGWVVETGDGNRYEADFVIAATGVLHHPAVPELPGLSEFTGEVLHTA 160
Cdd:COG2072   82 ILAYLEAYADKFGLRRPIRFGTEVTSARWdeADGRWTVTTDDGETLTARFVVVATGPLSRPKIPDIPGLEDFAGEQLHSA 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750578474 161 RWDDSVRTSGRRIAVIGTGSTGVQVVSALQPEAERVTHFVRSPQWViwapmqIPQPALVgavlnklPQVNRALYQAGMtg 240
Cdd:COG2072  162 DWRNPVDLAGKRVLVVGTGASAVQIAPELARVAAHVTVFQRTPPWV------LPRPNYD-------PERGRPANYLGL-- 226

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750578474 241 arlftdvVTRPSWRRRAVQEYARLSLRAQILQPSLrEQLTPDYEPLCKRQVLSGTYYRALRARNAELVTTAIEEVTPTGI 320
Cdd:COG2072  227 -------EAPPALNRRDARAWLRRLLRAQVKDPEL-GLLTPDYPPGCKRPLLSTDYYEALRRGNVELVTGGIERITEDGV 298

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750578474 321 RTADGRHHDLDMIVLATGFRAH-DYMRPMNLTGREDISiddawakGPRAYRMTAIPGFPNFFtVLGPHSPTGSIPLHHAA 399
Cdd:COG2072  299 VFADGTEHEVDVIVWATGFRADlPWLAPLDVRGRDGRS-------GPRAYLGVVVPGFPNLF-FLGPNSPSGHSSLTLGA 370

                        410       420       430       440
                 ....*....|....*....|....*....|....*....|....
gi 750578474 400 EVTARYIAKWIQRWTTGEFDTVEVTEDATARFESEVAAAMGPTV 443
Cdd:COG2072  371 ERQARYIARLIAHMRRRGAAAIEVRPEAEDAFNARLQRRAARTV 414
TrxB COG0492
Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones];
9-201 1.87e-22

Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440258 [Multi-domain]  Cd Length: 305  Bit Score: 97.50  E-value: 1.87e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750578474   9 IVIIGAGVSGIASAITLQRNGfHDFVILEKGsDVGG-VWHWNH---YPGLTCDVPsqlyqfgfapkpdwshifapGPEIQ 84
Cdd:COG0492    3 VVIIGAGPAGLTAAIYAARAG-LKTLVIEGG-EPGGqLATTKEienYPGFPEGIS--------------------GPELA 60

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750578474  85 RYLADVVERFGLRAHLRvnsEVVAATFTGAGWVVETGDGNRYEADFVIAATGVlhHPAVPELPGLSEFTGE-VLHTARWD 163
Cdd:COG0492   61 ERLREQAERFGAEILLE---EVTSVDKDDGPFRVTTDDGTEYEAKAVIIATGA--GPRKLGLPGEEEFEGRgVSYCATCD 135

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 750578474 164 -DSVRtsGRRIAVIGTGSTGVQVVSALQPEAERVTHFVR 201
Cdd:COG0492  136 gFFFR--GKDVVVVGGGDSALEEALYLTKFASKVTLIHR 172
Pyr_redox_3 pfam13738
Pyridine nucleotide-disulphide oxidoreductase;
18-205 8.63e-19

Pyridine nucleotide-disulphide oxidoreductase;


Pssm-ID: 404603 [Multi-domain]  Cd Length: 296  Bit Score: 86.51  E-value: 8.63e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750578474   18 GIASAITLQRNGFHDFVILEKGSdVGGVWHwnHYPG----LTCDVPSQLYQFGFAP------KPDWSH--IFAPGPEIQR 85
Cdd:pfam13738   3 GIGCAIALKKAGLEDYLILEKGN-IGNSFY--RYPThmtfFSPSFTSNGFGIPDLNaispgtSPAFTFnrEHPSGNEYAE 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750578474   86 YLADVVERFGLRAHLrvNSEVVAATFTGAGWVVETgDGNRYEADFVIAATGVLHHPAVPELPGLSEFTGEVLHtarWDDs 165
Cdd:pfam13738  80 YLRRVADHFELPINL--FEEVTSVKKEDDGFVVTT-SKGTYQARYVIIATGEFDFPNKLGVPELPKHYSYVKD---FHP- 152

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 750578474  166 vrTSGRRIAVIGTGSTGVQVvsALQPEAE--RVTHFVRSPQW 205
Cdd:pfam13738 153 --YAGQKVVVIGGYNSAVDA--ALELVRKgaRVTVLYRGSEW 190
Pyr_redox_2 pfam07992
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ...
 7-189 2.81e-15

Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.


Pssm-ID: 400379 [Multi-domain]  Cd Length: 301  Bit Score: 76.20  E-value: 2.81e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750578474    7 PRIVIIGAGVSGIASAITLQRNGfHDFVILEKGsdvggvwhwNHYPGLTCdVPSQLyqFGFAPKPDwsHIFAPGPEIQRY 86
Cdd:pfam07992   1 YDVVVIGGGPAGLAAALTLAQLG-GKVTLIEDE---------GTCPYGGC-VLSKA--LLGAAEAP--EIASLWADLYKR 65

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750578474   87 LADVVERFGLRAHLRVNSEVVA-----ATFTGAGWVveTGDGNRYEADFVIAATGVlhHPAVPELPGLSEFTGEVLHTar 161
Cdd:pfam07992  66 KEEVVKKLNNGIEVLLGTEVVSidpgaKKVVLEELV--DGDGETITYDRLVIATGA--RPRLPPIPGVELNVGFLVRT-- 139

                         170       180       190
                  ....*....|....*....|....*....|..
gi 750578474  162 WDD----SVRTSGRRIAVIGTGSTGVQVVSAL 189
Cdd:pfam07992 140 LDSaealRLKLLPKRVVVVGGGYIGVELAAAL 171
FMO-like pfam00743
Flavin-binding monooxygenase-like; This family includes FMO proteins, cyclohexanone ...
 8-207 3.97e-15

Flavin-binding monooxygenase-like; This family includes FMO proteins, cyclohexanone mono-oxygenase and a number of different mono-oxygenases.


Pssm-ID: 395602 [Multi-domain]  Cd Length: 531  Bit Score: 77.51  E-value: 3.97e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750578474    8 RIVIIGAGVSGIASAITLQRNGFHDfVILEKGSDVGGVWHWNH---------YPGLTCDVPSQLYQFGFAPKPDWSHIFA 78
Cdd:pfam00743   3 KVAVIGAGVSGLASIKCCLEEGLEP-TCFERSDDIGGLWRFTEnveegrasiYKSVITNTSKEMSCFSDFPFPEDYPNFM 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750578474   79 PGPEIQRYLADVVERFGLRAHLRVNSEVVAAT----FTGAG-W-VVETGDGNRYEA--DFVIAATGVLHHPAVP--ELPG 148
Cdd:pfam00743  82 HNSKFLEYFRMFAKEFDLLKYIQFKTTVCSVKkrpdFSTSGqWeVVTEHEGKQESAvfDAVMVCTGHHTNPHLPleSFPG 161

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 750578474  149 LSEFTGEVLHTARWDDSVRTSGRRIAVIGTGSTGVQVVSALQPEAERVTHFVRSPQWVI 207
Cdd:pfam00743 162 IEKFKGQYFHSRDYKHPEGFTGKRVLVIGIGNSGGDIAVELSHTAAQVFLSTRRGSWVL 220
YdhS COG4529
Uncharacterized NAD(P)/FAD-binding protein YdhS [General function prediction only];
3-189 8.40e-13

Uncharacterized NAD(P)/FAD-binding protein YdhS [General function prediction only];


Pssm-ID: 443597 [Multi-domain]  Cd Length: 466  Bit Score: 69.98  E-value: 8.40e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750578474   3 AARRPRIVIIGAGVSGIASAITLQRNGFHDF--VILEKGSDVG-GV-WHWNHyPGLTCDVPSqLYQFGFAPKP----DW- 73
Cdd:COG4529    2 TGARKRIAIIGGGASGTALAIHLLRRAPEPLriTLFEPRPELGrGVaYSTDS-PEHLLNVPA-GRMSAFPDDPdhflRWl 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750578474  74 -SHIFAPGPEIQ-----------RYLADV----VERFGLRAHLR-VNSEVVAATFTGAGWVVETGDGNRYEADFVIAATG 136
Cdd:COG4529   80 rENGARAAPAIDpdafvprrlfgEYLRERlaeaLARAPAGVRLRhIRAEVVDLERDDGGYRVTLADGETLRADAVVLATG 159

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 750578474 137 vlhHPAVPELPGLSEFTGEVLHTArWDDSVRTS---GRRIAVIGTGSTGVQVVSAL 189
Cdd:COG4529  160 ---HPPPAPPPGLAAGSPRYIADP-WPPGALARippDARVLIIGTGLTAIDVVLSL 211
Ndh COG1252
NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];
6-417 5.34e-11

NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];


Pssm-ID: 440864 [Multi-domain]  Cd Length: 386  Bit Score: 64.00  E-value: 5.34e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750578474   6 RPRIVIIGAGVSGIASAITLQRNGFHDF--VILEKGSdvggvwhWNHYPGLtcdvpsqLYQFGFAPKPDWshifapgpEI 83
Cdd:COG1252    1 MKRIVIVGGGFAGLEAARRLRKKLGGDAevTLIDPNP-------YHLFQPL-------LPEVAAGTLSPD--------DI 58

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750578474  84 QRYLADVVERFGLRahlrvnseVVAATFTG---AGWVVETGDGNRYEADFVIAATGVlhHPAVPELPGLSEFT------G 154
Cdd:COG1252   59 AIPLRELLRRAGVR--------FIQGEVTGidpEARTVTLADGRTLSYDYLVIATGS--VTNFFGIPGLAEHAlplktlE 128

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750578474 155 EVLHTARW-----DDSVRTSGRRIAVIGTGSTGVQVVSALqpeAERVTHFVRSPQwVIWAPMQIpqpalvgavlnklpqv 229
Cdd:COG1252  129 DALALRERllaafERAERRRLLTIVVVGGGPTGVELAGEL---AELLRKLLRYPG-IDPDKVRI---------------- 188

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750578474 230 nrALYQAGmtgARLFTDVvtrpswrRRAVQEYARlslraqilqpslreqltpdyeplckrqvlsgtyyRALRARNAELVT 309
Cdd:COG1252  189 --TLVEAG---PRILPGL-------GEKLSEAAE----------------------------------KELEKRGVEVHT 222

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750578474 310 -TAIEEVTPTGIRTADGRHHDLDMIVLATGFRAHDymrpmnLTGREDISIDDAWakgprayRMTA-----IPGFPNFFtV 383
Cdd:COG1252  223 gTRVTEVDADGVTLEDGEEIPADTVIWAAGVKAPP------LLADLGLPTDRRG-------RVLVdptlqVPGHPNVF-A 288

                        410       420       430       440
                 ....*....|....*....|....*....|....*....|....*
gi 750578474 384 LG-----------PHSPTGsiplhHAAEVTARYIAKWIQRWTTGE 417
Cdd:COG1252  289 IGdcaavpdpdgkPVPKTA-----QAAVQQAKVLAKNIAALLRGK 328
NAD_binding_9 pfam13454
FAD-NAD(P)-binding;
10-136 7.94e-11

FAD-NAD(P)-binding;


Pssm-ID: 433222 [Multi-domain]  Cd Length: 155  Bit Score: 60.37  E-value: 7.94e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750578474   10 VIIGAGVSGIASAITLQRNGFHD----FVILEKGSDVGGVW-------HWNHYPG-----LTCDVPSqLYQF-----GFA 68
Cdd:pfam13454   1 AIVGGGPSGLALLERLLARAPKRpleiTLFDPSPPGAGGVYrtdqspeHLLNVPAsrmslFPDDPPH-FLEWlrargALD 79

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 750578474   69 PKPDW-SHIFAPGPEIQRYLADVVERFGLRAH-----LRVNSEVVAATFTGAGWVVETGDGNRYEADFVIAATG 136
Cdd:pfam13454  80 EAPGLdPDDFPPRALYGRYLRDRFEEALARAPagvtvRVHRARVTDLRPRGDGYRVLLADGRTLAADAVVLATG 153
FixC COG0644
Dehydrogenase (flavoprotein) [Energy production and conversion];
14-137 3.89e-10

Dehydrogenase (flavoprotein) [Energy production and conversion];


Pssm-ID: 440409 [Multi-domain]  Cd Length: 281  Bit Score: 60.75  E-value: 3.89e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750578474  14 AGVSGIASAITLQRNGfHDFVILEKGSDVG----------GVWHWNHYPGLTCDVPSQLYQFGF-APKPDWSHIFAPGPE 82
Cdd:COG0644    1 AGPAGSAAARRLARAG-LSVLLLEKGSFPGdkicgggllpRALEELEPLGLDEPLERPVRGARFySPGGKSVELPPGRGG 79

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 750578474  83 ---IQR-----YLADVVERFGlrAHLRVNSEVVAATFTGAGWVVETGDGNRYEADFVIAATGV 137
Cdd:COG0644   80 gyvVDRarfdrWLAEQAEEAG--AEVRTGTRVTDVLRDDGRVVVRTGDGEEIRADYVVDADGA 140
PLN02172 PLN02172
flavin-containing monooxygenase FMO GS-OX
 1-218 1.44e-09

flavin-containing monooxygenase FMO GS-OX


Pssm-ID: 215116 [Multi-domain]  Cd Length: 461  Bit Score: 59.88  E-value: 1.44e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750578474   1 MGAARRP----RIVIIGAGVSGIASAITLQRNGfHDFVILEKGSDVGGVW--------------------HWNHYPGLTC 56
Cdd:PLN02172   1 MAPAQNPinsqHVAVIGAGAAGLVAARELRREG-HTVVVFEREKQVGGLWvytpksesdplsldptrsivHSSVYESLRT 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750578474  57 DVPSQ---LYQFGFAPKPDW----SHIFAPGPEIQRYLADVVERFGLRAHLRVNSEVVAATFTGAGWVVETGDGNRYEA- 128
Cdd:PLN02172  80 NLPREcmgYRDFPFVPRFDDesrdSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKd 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750578474 129 ---DFVIAATGVLHHPAVPELPGLSEFTGEVLHTARWDDSVRTSGRRIAVIGTGSTGVQVVSALQPEAERVTHFVRSPQW 205
Cdd:PLN02172 160 eifDAVVVCNGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRASES 239

                        250
                 ....*....|...
gi 750578474 206 VIWAPMQIPQPAL 218
Cdd:PLN02172 240 DTYEKLPVPQNNL 252
UbiH COG0654
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme ...
 4-137 2.89e-09

2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme transport and metabolism, Energy production and conversion]; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases is part of the Pathway/BioSystem: Ubiquinone biosynthesis


Pssm-ID: 440419 [Multi-domain]  Cd Length: 326  Bit Score: 58.41  E-value: 2.89e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750578474   4 ARRPRIVIIGAGVSGIASAITLQRNGfHDFVILEKGSDVG-------------------GVW--------HWNHYPGLTC 56
Cdd:COG0654    1 MMRTDVLIVGGGPAGLALALALARAG-IRVTVVERAPPPRpdgrgialsprslellrrlGLWdrllargaPIRGIRVRDG 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750578474  57 DVPSQLYQFGFAPKPDWSHIFAPGPEIQRYLADVVERFGlrAHLRVNSEVVAATFTGAGWVVETGDGNRYEADFVIAATG 136
Cdd:COG0654   80 SDGRVLARFDAAETGLPAGLVVPRADLERALLEAARALG--VELRFGTEVTGLEQDADGVTVTLADGRTLRADLVVGADG 157


                 .
gi 750578474 137 V 137
Cdd:COG0654  158 A 158
PLN02676 PLN02676
polyamine oxidase
 1-55 5.62e-09

polyamine oxidase


Pssm-ID: 215362 [Multi-domain]  Cd Length: 487  Bit Score: 58.19  E-value: 5.62e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 750578474   1 MGAARRPRIVIIGAGVSGIASAITLQRNGFHDFVILEKGSDVGGVWHWNHYPGLT 55
Cdd:PLN02676  21 MDAKPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAGVS 75
NAD_binding_8 pfam13450
NAD(P)-binding Rossmann-like domain;
11-78 2.22e-08

NAD(P)-binding Rossmann-like domain;


Pssm-ID: 433218 [Multi-domain]  Cd Length: 67  Bit Score: 50.61  E-value: 2.22e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 750578474   11 IIGAGVSGIASAITLQRNGfHDFVILEKGSDVGGVWHWNHYPGLTCDVPSQLYqFGFAPkPDWSHIFA 78
Cdd:pfam13450   1 IVGAGLAGLVAAALLAKRG-FRVLVLEKRDRLGGNAYSYRVPGYVFDYGAHIF-HGSDE-PNVRDLLD 65
Lpd COG1249
Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex ...
 9-204 6.63e-08

Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase [Energy production and conversion]; Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase is part of the Pathway/BioSystem: Glycine cleavagePyruvate oxidation


Pssm-ID: 440861 [Multi-domain]  Cd Length: 456  Bit Score: 54.71  E-value: 6.63e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750578474   9 IVIIGAGVSGIASAITLQRNGFhDFVILEKGsDVGGvwhwnhypglTC----DVPS--------------QLYQFGF--- 67
Cdd:COG1249    6 LVVIGAGPGGYVAAIRAAQLGL-KVALVEKG-RLGG----------TClnvgCIPSkallhaaevahearHAAEFGIsag 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750578474  68 APKPDWshifapgPEIQRYLADVVERF--GLRAHLRVNS-EVVA--ATFTGAgWVVETGDGNRYEADFVIAATGvlHHPA 142
Cdd:COG1249   74 APSVDW-------AALMARKDKVVDRLrgGVEELLKKNGvDVIRgrARFVDP-HTVEVTGGETLTADHIVIATG--SRPR 143

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 750578474 143 VPELPGLSEftgEVLHTarWDD--SVRTSGRRIAVIGTGSTGV---QVVSALQPEaerVTHFVRSPQ 204
Cdd:COG1249  144 VPPIPGLDE---VRVLT--SDEalELEELPKSLVVIGGGYIGLefaQIFARLGSE---VTLVERGDR 202
PRK06292 PRK06292
dihydrolipoamide dehydrogenase; Validated
 9-204 1.73e-06

dihydrolipoamide dehydrogenase; Validated


Pssm-ID: 235774 [Multi-domain]  Cd Length: 460  Bit Score: 50.18  E-value: 1.73e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750578474   9 IVIIGAGVSGIASAITLQRNGFHdFVILEKGSdvggvwhwnhyPGLTCD----VPSQLY--------------QFGF--- 67
Cdd:PRK06292   6 VIVIGAGPAGYVAARRAAKLGKK-VALIEKGP-----------LGGTCLnvgcIPSKALiaaaeafheakhaeEFGIhad 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750578474  68 APKPDWshifapgPEIQRYLADVVERFGLRAHLRVNSEVVAATFTGAGWVVETG----DGNRYEADFVIAATGvlhhPAV 143
Cdd:PRK06292  74 GPKIDF-------KKVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPNtvevNGERIEAKNIVIATG----SRV 142

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 750578474 144 PELPGLSEFTGEVLHTARWDDSVRTSGRRIAVIGTGSTGVQVVSALQPEAERVTHFVRSPQ 204
Cdd:PRK06292 143 PPIPGVWLILGDRLLTSDDAFELDKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDR 203
HemY COG1232
Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen ...
 6-44 6.54e-06

Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen oxidase HemY/PPOX is part of the Pathway/BioSystem: Heme biosynthesis


Pssm-ID: 440845 [Multi-domain]  Cd Length: 443  Bit Score: 48.29  E-value: 6.54e-06
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 750578474   6 RPRIVIIGAGVSGIASAITLQRNGfHDFVILEKGSDVGG 44
Cdd:COG1232    1 MKRVAVIGGGIAGLTAAYRLAKAG-HEVTVLEASDRVGG 38
LhgO COG0579
L-2-hydroxyglutarate oxidase LhgO [Carbohydrate transport and metabolism];
9-137 9.35e-06

L-2-hydroxyglutarate oxidase LhgO [Carbohydrate transport and metabolism];


Pssm-ID: 440344 [Multi-domain]  Cd Length: 418  Bit Score: 47.83  E-value: 9.35e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750578474   9 IVIIGAGVSGIASAITLQRNGFHDFVILEKGSDVG--------GVWHWNHY--PG-----LTCDVPSQLY----QFGFAP 69
Cdd:COG0579    7 VVIIGAGIVGLALARELSRYEDLKVLVLEKEDDVAqessgnnsGVIHAGLYytPGslkarLCVEGNELFYelcrELGIPF 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750578474  70 KPDWSHIFAPGPEIQRYLADVVERF------GLR---------------------------------------------- 97
Cdd:COG0579   87 KRCGKLVVATGEEEVAFLEKLYERGkangvpGLEildreelrelepllsdegvaalyspstgivdpgaltralaenaean 166

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 750578474  98 -AHLRVNSEVVAATFTGAGWVVETGDGnRYEADFVIAATGV 137
Cdd:COG0579  167 gVELLLNTEVTGIEREGDGWEVTTNGG-TIRARFVINAAGL 206
Lys_Orn_oxgnase pfam13434
L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase; This is a family of Rossmann fold ...
 82-340 1.47e-05

L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase; This is a family of Rossmann fold oxidoreductases that catalyze NADPH-dependent hydroxylation and are involved in siderophore biosynthesis. This family includes L-ornithine 5-monooxygenase, which catalyzes the hydroxylation of L-ornithine at the N5 position, and L-lysine 6-monooxygenase, which catalyzes the hydroxylation of lysine at the N6 position (EC:1.14.13.59).


Pssm-ID: 433204 [Multi-domain]  Cd Length: 338  Bit Score: 46.81  E-value: 1.47e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750578474   82 EIQRYLADVVERFGlrAHLRVNSEVVAATFTGAGW--------VVETGDGNRYEADFVIAATGVlhhpaVPELPGLSEFT 153
Cdd:pfam13434  96 EFNDYLQWAASHLP--NRLRFGQEVESVEPDAERGepllrvrvRDADGEETTFLARNLVLGTGG-----EPYIPECARGG 168

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750578474  154 GEVLHTARW--DDSVRTSGRRIAVIGTGSTGVQVVSALqpeAERVTHFvrSPQWVIWAPMQIPqpalvgavLNKLPQVNr 231
Cdd:pfam13434 169 ERVFHSSEYleRIDRLAAKKRIAVVGSGQSAAEIFRDL---LRRGPAY--ELTWVTRSPNFFP--------LDDSPFVN- 234

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750578474  232 alyqagmtgaRLFT-----DVVTRPSWRRRAVQEYARLSLRAQIlQPSLREQLtpdYEPLCKRQVLSGTYYRALraRNAE 306
Cdd:pfam13434 235 ----------EIFSpeyvdYFYSLPEDTRRALLREQKGTNYDGI-DPSLIEEI---YRLLYEQRVDGDPRHRLL--PNRE 298

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 750578474  307 LvtTAIEEVTPTGIR-----TADGRH--HDLDMIVLATGFR 340
Cdd:pfam13434 299 V--QSAERVGDGGVEltlrdGEQGREetLETDVVVLATGYR 337
FadH2 COG0446
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase ...
 65-211 1.54e-05

NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase [Lipid transport and metabolism];


Pssm-ID: 440215 [Multi-domain]  Cd Length: 322  Bit Score: 46.73  E-value: 1.54e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750578474  65 FGFAPKPDWSHIFAPGPEIQRYLADVVERF-GLRAHLRVNSEVVAatFTGAGWVVETGDGNRYEADFVIAATGVlhHPAV 143
Cdd:COG0446   17 HSYQPCGLPYYVGGGIKDPEDLLVRTPESFeRKGIDVRTGTEVTA--IDPEAKTVTLRDGETLSYDKLVLATGA--RPRP 92

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 750578474 144 PELPGLsefTGEVLHTAR-WDDSVRT-------SGRRIAVIGTGSTGVQVVSALqpeAER---VTHFVRSPQwvIWAPM 211
Cdd:COG0446   93 PPIPGL---DLPGVFTLRtLDDADALrealkefKGKRAVVIGGGPIGLELAEAL---RKRglkVTLVERAPR--LLGVL 163
PRK08132 PRK08132
FAD-dependent oxidoreductase; Provisional
 1-156 1.55e-05

FAD-dependent oxidoreductase; Provisional


Pssm-ID: 236158 [Multi-domain]  Cd Length: 547  Bit Score: 47.56  E-value: 1.55e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750578474   1 MGAARRPRIVIIGAGVSGIASAITLQRNGfHDFVILEK------GS----------------DVG------GVwHWNhyP 52
Cdd:PRK08132  18 ADDPARHPVVVVGAGPVGLALAIDLAQQG-VPVVLLDDddtlstGSraicfakrsleifdrlGCGermvdkGV-SWN--V 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750578474  53 GLTCDVPSQLYQFGFAPKPDwsHIFAPGPEIQRY-----LADVVERFGLrAHLRVNSEVVAATFTGAGWV--VETGDGN- 124
Cdd:PRK08132  94 GKVFLRDEEVYRFDLLPEPG--HRRPAFINLQQYyvegyLVERAQALPN-IDLRWKNKVTGLEQHDDGVTltVETPDGPy 170

                        170       180       190
                 ....*....|....*....|....*....|..
gi 750578474 125 RYEADFVIAATGVlhHPAVPELPGLsEFTGEV 156
Cdd:PRK08132 171 TLEADWVIACDGA--RSPLREMLGL-EFEGRT 199
COG1233 COG1233
Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and ...
 5-44 3.42e-05

Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 440846 [Multi-domain]  Cd Length: 491  Bit Score: 46.38  E-value: 3.42e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 750578474   5 RRPRIVIIGAGVSGIASAITLQRNGfHDFVILEKGSDVGG 44
Cdd:COG1233    2 MMYDVVVIGAGIGGLAAAALLARAG-YRVTVLEKNDTPGG 40
YobN COG1231
Monoamine oxidase [Amino acid transport and metabolism];
4-44 6.20e-05

Monoamine oxidase [Amino acid transport and metabolism];


Pssm-ID: 440844 [Multi-domain]  Cd Length: 440  Bit Score: 45.30  E-value: 6.20e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 750578474   4 ARRPRIVIIGAGVSGIASAITLQRNGfHDFVILEKGSDVGG 44
Cdd:COG1231    5 ARGKDVVIVGAGLAGLAAARELRKAG-LDVTVLEARDRVGG 44
HdrA COG1148
Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];
7-56 1.04e-04

Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];


Pssm-ID: 440762 [Multi-domain]  Cd Length: 563  Bit Score: 44.85  E-value: 1.04e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 750578474   7 PRIVIIGAGVSGIASAITLQRNGFHdfVIL-EKGSDVGGVW-HWNHY-PGLTC 56
Cdd:COG1148  141 KRALVIGGGIAGMTAALELAEQGYE--VYLvEKEPELGGRAaQLHKTfPGLDC 191
Pyr_redox_2 pfam07992
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ...
 8-137 2.47e-04

Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.


Pssm-ID: 400379 [Multi-domain]  Cd Length: 301  Bit Score: 43.08  E-value: 2.47e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750578474    8 RIVIIGAGVSGIASAITLQRNGfHDFVILEKGSDVGgvwhwnhypgltcdvpsqlyqfgfapkpdwshiFAPGPEIQRYL 87
Cdd:pfam07992 154 RVVVVGGGYIGVELAAALAKLG-KEVTLIEALDRLL---------------------------------RAFDEEISAAL 199

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 750578474   88 ADVVERFGLRahLRVNSEVVAATFTGAGWVVETGDGNRYEADFVIAATGV 137
Cdd:pfam07992 200 EKALEKNGVE--VRLGTSVKEIIGDGDGVEVILKDGTEIDADLVVVAIGR 247
FadH2 COG0446
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase ...
 8-137 2.80e-04

NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase [Lipid transport and metabolism];


Pssm-ID: 440215 [Multi-domain]  Cd Length: 322  Bit Score: 42.88  E-value: 2.80e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750578474   8 RIVIIGAGVSGIASAITLQRNGfHDFVILEKGSdvggvwhwnhypgltcdvpsqlyqfgfapkpdwsHIFAP-GPEIQRY 86
Cdd:COG0446  126 RAVVIGGGPIGLELAEALRKRG-LKVTLVERAP----------------------------------RLLGVlDPEMAAL 170

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 750578474  87 LADVVERFGlrAHLRVNSEVVAatFTGAGWV-VETGDGNRYEADFVIAATGV 137
Cdd:COG0446  171 LEEELREHG--VELRLGETVVA--IDGDDKVaVTLTDGEEIPADLVVVAPGV 218
PRK07233 PRK07233
hypothetical protein; Provisional
 8-44 8.26e-04

hypothetical protein; Provisional


Pssm-ID: 235977 [Multi-domain]  Cd Length: 434  Bit Score: 41.80  E-value: 8.26e-04
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 750578474   8 RIVIIGAGVSGIASAITLQRNGfHDFVILEKGSDVGG 44
Cdd:PRK07233   1 KIAIVGGGIAGLAAAYRLAKRG-HEVTVFEADDQLGG 36
PRK04965 PRK04965
NADH:flavorubredoxin reductase NorW;
99-191 1.35e-03

NADH:flavorubredoxin reductase NorW;


Pssm-ID: 179902 [Multi-domain]  Cd Length: 377  Bit Score: 41.06  E-value: 1.35e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750578474  99 HLRVNSEVVAATFTGAGWVVETGDGNRYEADFVIAATGVLHHPAVPELPGLSEFTGEVLhtarwDDSVRTSGRRIAVIG- 177
Cdd:PRK04965 199 HLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPNTALARRAGLAVNRGIVV-----DSYLQTSAPDIYALGd 273

                         90
                 ....*....|....
gi 750578474 178 TGSTGVQVVSALQP 191
Cdd:PRK04965 274 CAEINGQVLPFLQP 287
HemY COG1232
Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen ...
 97-151 1.54e-03

Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen oxidase HemY/PPOX is part of the Pathway/BioSystem: Heme biosynthesis


Pssm-ID: 440845 [Multi-domain]  Cd Length: 443  Bit Score: 40.97  E-value: 1.54e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 750578474  97 RAHLRVNSEVVAATFTGAGWVVETGDGNRYEADFVIAATGvlHHPAVPELPGLSE 151
Cdd:COG1232  222 AGEIRLGTRVTAIEREGGGWRVTTSDGETIEADAVVSATP--APALARLLAPLPP 274
PRK11883 PRK11883
protoporphyrinogen oxidase; Reviewed
 7-45 2.44e-03

protoporphyrinogen oxidase; Reviewed


Pssm-ID: 237009 [Multi-domain]  Cd Length: 451  Bit Score: 40.22  E-value: 2.44e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 750578474   7 PRIVIIGAGVSGIASAITLQRNGFH-DFVILEKGSDVGGV 45
Cdd:PRK11883   1 KKVAIIGGGITGLSAAYRLHKKGPDaDITLLEASDRLGGK 40
PLN02976 PLN02976
amine oxidase
 6-44 2.84e-03

amine oxidase


Pssm-ID: 215527 [Multi-domain]  Cd Length: 1713  Bit Score: 40.62  E-value: 2.84e-03
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 750578474    6 RPRIVIIGAGVSGIASAITLQRNGFhDFVILEKGSDVGG 44
Cdd:PLN02976  693 RKKIIVVGAGPAGLTAARHLQRQGF-SVTVLEARSRIGG 730
PLN02268 PLN02268
probable polyamine oxidase
 7-99 3.42e-03

probable polyamine oxidase


Pssm-ID: 177909 [Multi-domain]  Cd Length: 435  Bit Score: 39.67  E-value: 3.42e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750578474   7 PRIVIIGAGVSGIASAITLQRNGFhDFVILEKGSDVGGVWHWNhypgltcdvpsqlYQFGFapkP-----DWSHifapGP 81
Cdd:PLN02268   1 PSVIVIGGGIAGIAAARALHDASF-KVTLLESRDRIGGRVHTD-------------YSFGF---PvdmgaSWLH----GV 59

                         90
                 ....*....|....*...
gi 750578474  82 EIQRYLADVVERFGLRAH 99
Cdd:PLN02268  60 CNENPLAPLIGRLGLPLY 77
DadA COG0665
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];
5-39 4.01e-03

Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];


Pssm-ID: 440429 [Multi-domain]  Cd Length: 364  Bit Score: 39.50  E-value: 4.01e-03
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 750578474   5 RRPRIVIIGAGVSGIASAITLQRNGfHDFVILEKG 39
Cdd:COG0665    1 ATADVVVIGGGIAGLSTAYHLARRG-LDVTVLERG 34
COG3349 COG3349
Uncharacterized protein, contains NAD-binding domain and a Fe-S cluster [General function ...
 5-44 4.71e-03

Uncharacterized protein, contains NAD-binding domain and a Fe-S cluster [General function prediction only];


Pssm-ID: 442577 [Multi-domain]  Cd Length: 445  Bit Score: 39.45  E-value: 4.71e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 750578474   5 RRPRIVIIGAGVSGIASAITLQRNGfHDFVILEKGSDVGG 44
Cdd:COG3349    2 MPPRVVVVGGGLAGLAAAVELAEAG-FRVTLLEARPRLGG 40
PLN02568 PLN02568
polyamine oxidase
 4-44 6.32e-03

polyamine oxidase


Pssm-ID: 215308 [Multi-domain]  Cd Length: 539  Bit Score: 39.04  E-value: 6.32e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 750578474   4 ARRPRIVIIGAGVSGIASAITLQRNGFH----DFVILEKGSDVGG 44
Cdd:PLN02568   3 AKKPRIVIIGAGMAGLTAANKLYTSSAAndmfELTVVEGGDRIGG 47
DAO pfam01266
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: ...
 8-44 6.56e-03

FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.


Pssm-ID: 426168 [Multi-domain]  Cd Length: 339  Bit Score: 38.53  E-value: 6.56e-03
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 750578474    8 RIVIIGAGVSGIASAITLQRNGfHDFVILEKGSDVGG 44
Cdd:pfam01266   1 DVVVIGGGIVGLSTAYELARRG-LSVTLLERGDDPGS 36
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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