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Conserved domains on  [gi|488034704|ref|WP_002106101|]
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Ig-like domain-containing protein [Leptospira interrogans]

Protein Classification

Ig-like domain-containing protein( domain architecture ID 10590306)

bacterial immunoglobulin (Ig)-like domain-containing protein such as Marinobacter hydrocarbonoclasticus alkane uptake protein B (AupB), which is involved in growth/biofilm formation on alkane substrates, together with AupA

PubMed:  34986320|33355339

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
Big_5 pfam13205
Bacterial Ig-like domain;
191-271 1.75e-07

Bacterial Ig-like domain;


:

Pssm-ID: 463809 [Multi-domain]  Cd Length: 105  Bit Score: 49.68  E-value: 1.75e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488034704  191 GNPLVNQVIVNFSRPMNTTATLNALSISPTVSANY-----VWSSPNTLTIQPDFAFNSNQRYIVNFGTGAKDQNGIALSG 265
Cdd:pfam13205  18 NVAVNSSITVTFSEAIDPATVNAAVVIVLSDGAGVpvtgtVSVDGKTVTITPSAALAANTTYTVTITAGIKDLAGNALAG 97


                  ....*.
gi 488034704  266 NTVGTF 271
Cdd:pfam13205  98 PYTWSF 103
Big_5 pfam13205
Bacterial Ig-like domain;
50-144 7.43e-05

Bacterial Ig-like domain;


:

Pssm-ID: 463809 [Multi-domain]  Cd Length: 105  Bit Score: 41.98  E-value: 7.43e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488034704   50 PPEVIFSSPASGSDSLPSTQKFDVGFSREMNMQSCR--IAFSMSPQTTGFFTE---LNGTVLTFAPSMPLNPG-SYTYTV 123
Cdd:pfam13205   4 PPTVVSTTPADGATNVAVNSSITVTFSEAIDPATVNaaVVIVLSDGAGVPVTGtvsVDGKTVTITPSAALAANtTYTVTI 83

                          90       100
                  ....*....|....*....|.
gi 488034704  124 TKNCEDKAGLDLKDPFSASIT 144
Cdd:pfam13205  84 TAGIKDLAGNALAGPYTWSFT 104
Big_5 pfam13205
Bacterial Ig-like domain;
301-397 1.21e-04

Bacterial Ig-like domain;


:

Pssm-ID: 463809 [Multi-domain]  Cd Length: 105  Bit Score: 41.59  E-value: 1.21e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488034704  301 IPTDIIATTVNNGCLGNPNAQSIVFNFNTPMNTAVTQAAISIS------PPISGTFAWSagNQTLAFTTDSKLEYGTRYN 374
Cdd:pfam13205   3 TPPTVVSTTPADGATNVAVNSSITVTFSEAIDPATVNAAVVIVlsdgagVPVTGTVSVD--GKTVTITPSAALAANTTYT 80

                          90       100
                  ....*....|....*....|...
gi 488034704  375 ISIGTSAQAANQTYLTTPVSASF 397
Cdd:pfam13205  81 VTITAGIKDLAGNALAGPYTWSF 103
 
Name Accession Description Interval E-value
Big_5 pfam13205
Bacterial Ig-like domain;
191-271 1.75e-07

Bacterial Ig-like domain;


Pssm-ID: 463809 [Multi-domain]  Cd Length: 105  Bit Score: 49.68  E-value: 1.75e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488034704  191 GNPLVNQVIVNFSRPMNTTATLNALSISPTVSANY-----VWSSPNTLTIQPDFAFNSNQRYIVNFGTGAKDQNGIALSG 265
Cdd:pfam13205  18 NVAVNSSITVTFSEAIDPATVNAAVVIVLSDGAGVpvtgtVSVDGKTVTITPSAALAANTTYTVTITAGIKDLAGNALAG 97


                  ....*.
gi 488034704  266 NTVGTF 271
Cdd:pfam13205  98 PYTWSF 103
Big_5 pfam13205
Bacterial Ig-like domain;
50-144 7.43e-05

Bacterial Ig-like domain;


Pssm-ID: 463809 [Multi-domain]  Cd Length: 105  Bit Score: 41.98  E-value: 7.43e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488034704   50 PPEVIFSSPASGSDSLPSTQKFDVGFSREMNMQSCR--IAFSMSPQTTGFFTE---LNGTVLTFAPSMPLNPG-SYTYTV 123
Cdd:pfam13205   4 PPTVVSTTPADGATNVAVNSSITVTFSEAIDPATVNaaVVIVLSDGAGVPVTGtvsVDGKTVTITPSAALAANtTYTVTI 83

                          90       100
                  ....*....|....*....|.
gi 488034704  124 TKNCEDKAGLDLKDPFSASIT 144
Cdd:pfam13205  84 TAGIKDLAGNALAGPYTWSFT 104
Big_5 pfam13205
Bacterial Ig-like domain;
301-397 1.21e-04

Bacterial Ig-like domain;


Pssm-ID: 463809 [Multi-domain]  Cd Length: 105  Bit Score: 41.59  E-value: 1.21e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488034704  301 IPTDIIATTVNNGCLGNPNAQSIVFNFNTPMNTAVTQAAISIS------PPISGTFAWSagNQTLAFTTDSKLEYGTRYN 374
Cdd:pfam13205   3 TPPTVVSTTPADGATNVAVNSSITVTFSEAIDPATVNAAVVIVlsdgagVPVTGTVSVD--GKTVTITPSAALAANTTYT 80

                          90       100
                  ....*....|....*....|...
gi 488034704  375 ISIGTSAQAANQTYLTTPVSASF 397
Cdd:pfam13205  81 VTITAGIKDLAGNALAGPYTWSF 103
 
Name Accession Description Interval E-value
Big_5 pfam13205
Bacterial Ig-like domain;
191-271 1.75e-07

Bacterial Ig-like domain;


Pssm-ID: 463809 [Multi-domain]  Cd Length: 105  Bit Score: 49.68  E-value: 1.75e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488034704  191 GNPLVNQVIVNFSRPMNTTATLNALSISPTVSANY-----VWSSPNTLTIQPDFAFNSNQRYIVNFGTGAKDQNGIALSG 265
Cdd:pfam13205  18 NVAVNSSITVTFSEAIDPATVNAAVVIVLSDGAGVpvtgtVSVDGKTVTITPSAALAANTTYTVTITAGIKDLAGNALAG 97


                  ....*.
gi 488034704  266 NTVGTF 271
Cdd:pfam13205  98 PYTWSF 103
Big_5 pfam13205
Bacterial Ig-like domain;
50-144 7.43e-05

Bacterial Ig-like domain;


Pssm-ID: 463809 [Multi-domain]  Cd Length: 105  Bit Score: 41.98  E-value: 7.43e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488034704   50 PPEVIFSSPASGSDSLPSTQKFDVGFSREMNMQSCR--IAFSMSPQTTGFFTE---LNGTVLTFAPSMPLNPG-SYTYTV 123
Cdd:pfam13205   4 PPTVVSTTPADGATNVAVNSSITVTFSEAIDPATVNaaVVIVLSDGAGVPVTGtvsVDGKTVTITPSAALAANtTYTVTI 83

                          90       100
                  ....*....|....*....|.
gi 488034704  124 TKNCEDKAGLDLKDPFSASIT 144
Cdd:pfam13205  84 TAGIKDLAGNALAGPYTWSFT 104
Big_5 pfam13205
Bacterial Ig-like domain;
301-397 1.21e-04

Bacterial Ig-like domain;


Pssm-ID: 463809 [Multi-domain]  Cd Length: 105  Bit Score: 41.59  E-value: 1.21e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488034704  301 IPTDIIATTVNNGCLGNPNAQSIVFNFNTPMNTAVTQAAISIS------PPISGTFAWSagNQTLAFTTDSKLEYGTRYN 374
Cdd:pfam13205   3 TPPTVVSTTPADGATNVAVNSSITVTFSEAIDPATVNAAVVIVlsdgagVPVTGTVSVD--GKTVTITPSAALAANTTYT 80

                          90       100
                  ....*....|....*....|...
gi 488034704  375 ISIGTSAQAANQTYLTTPVSASF 397
Cdd:pfam13205  81 VTITAGIKDLAGNALAGPYTWSF 103
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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