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Conserved domains on  [gi|447036008|ref|WP_001113264|]
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MULTISPECIES: TraR/DksA C4-type zinc finger protein [Gammaproteobacteria]

Protein Classification

TraR/DksA C4-type zinc finger protein( domain architecture ID 3397)

TraR/DksA C4-type zinc finger protein may function as a transcriptional regulator

CATH:  1.10.287.3960
Gene Ontology:  GO:0008270
PubMed:  15294157
SCOP:  4003090

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
zf-dskA_traR super family cl00755
Prokaryotic dksA/traR C4-type zinc finger;
2-69 7.55e-18

Prokaryotic dksA/traR C4-type zinc finger;


The actual alignment was detected with superfamily member PHA00080:

Pssm-ID: 445081  Cd Length: 72  Bit Score: 69.78  E-value: 7.55e-18
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 447036008  2 PDNVDFIQEQQAELLERQINAARVKHCGASALVCEECDAPIPAARRAAYPSATRCVSCQSVFEAKNKH 69
Cdd:PHA00080  1 ADIIDRAAEIEELQRERALANRRNKYQAPSATHCEECGDPIPEARREAVPGCRTCVSCQEILELKSYQ 68
 
Name Accession Description Interval E-value
PHA00080 PHA00080
DksA-like zinc finger domain containing protein
 2-69 7.55e-18

DksA-like zinc finger domain containing protein


Pssm-ID: 222775  Cd Length: 72  Bit Score: 69.78  E-value: 7.55e-18
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 447036008  2 PDNVDFIQEQQAELLERQINAARVKHCGASALVCEECDAPIPAARRAAYPSATRCVSCQSVFEAKNKH 69
Cdd:PHA00080  1 ADIIDRAAEIEELQRERALANRRNKYQAPSATHCEECGDPIPEARREAVPGCRTCVSCQEILELKSYQ 68
C4_traR_proteo TIGR02419
phage/conjugal plasmid C-4 type zinc finger protein, TraR family; Members of this family are ...
 3-64 1.40e-12

phage/conjugal plasmid C-4 type zinc finger protein, TraR family; Members of this family are putative C4-type zinc finger proteins found almost exclusively in prophage regions, actual phage, or conjugal transfer regions of the Proteobactia. This small protein (about 70 amino acids) appears homologous to but is smaller than DksA (DnaK suppressor protein), found to be critical for regulating transcription of ribosomal RNA. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 274123  Cd Length: 63  Bit Score: 56.25  E-value: 1.40e-12
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 447036008   3 DNVDFIQEQQAELLERQINAARVKHC-GASALVCEECDAPIPAARRAAYPSATRCVSCQSVFE 64
Cdd:TIGR02419  1 DEFDRAQELEEELLERALAAARAKKViGPSLRECEDCGEPIPEARREALPGVTRCVSCQEILE 63
 
Name Accession Description Interval E-value
PHA00080 PHA00080
DksA-like zinc finger domain containing protein
 2-69 7.55e-18

DksA-like zinc finger domain containing protein


Pssm-ID: 222775  Cd Length: 72  Bit Score: 69.78  E-value: 7.55e-18
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 447036008  2 PDNVDFIQEQQAELLERQINAARVKHCGASALVCEECDAPIPAARRAAYPSATRCVSCQSVFEAKNKH 69
Cdd:PHA00080  1 ADIIDRAAEIEELQRERALANRRNKYQAPSATHCEECGDPIPEARREAVPGCRTCVSCQEILELKSYQ 68
C4_traR_proteo TIGR02419
phage/conjugal plasmid C-4 type zinc finger protein, TraR family; Members of this family are ...
 3-64 1.40e-12

phage/conjugal plasmid C-4 type zinc finger protein, TraR family; Members of this family are putative C4-type zinc finger proteins found almost exclusively in prophage regions, actual phage, or conjugal transfer regions of the Proteobactia. This small protein (about 70 amino acids) appears homologous to but is smaller than DksA (DnaK suppressor protein), found to be critical for regulating transcription of ribosomal RNA. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 274123  Cd Length: 63  Bit Score: 56.25  E-value: 1.40e-12
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 447036008   3 DNVDFIQEQQAELLERQINAARVKHC-GASALVCEECDAPIPAARRAAYPSATRCVSCQSVFE 64
Cdd:TIGR02419  1 DEFDRAQELEEELLERALAAARAKKViGPSLRECEDCGEPIPEARREALPGVTRCVSCQEILE 63
PRK11019 PRK11019
DksA/TraR family C4-type zinc finger protein;
8-68 3.62e-03

DksA/TraR family C4-type zinc finger protein;


Pssm-ID: 182903  Cd Length: 88  Bit Score: 32.92  E-value: 3.62e-03
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 447036008  8 IQEQQAELLERQINAARVK-HCGASALVCEECDAPIPAARRAAYPSATRCVSCQSVFEAKNK 68
Cdd:PRK11019 11 VQEQIDATVEDAIARARSElPRGESLTECEECGEPIPEARRKAIPGVRLCVACQQEKDLQQA 72
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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