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Conserved domains on  [gi|1279314247|dbj|GBC20206|]
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PSP1-domain-containing protein [Rhizophagus irregularis DAOM 181602=DAOM 197198]

Protein Classification

PSP1 domain-containing protein( domain architecture ID 10517215)

PSP1 domain-containing protein similar to Saccharomyces cerevisiae protein PSP1 (polymerase suppressor protein 1), which is a DNA polymerase alpha mutation suppressor

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PSP1 pfam04468
PSP1 C-terminal conserved region; This region is present in both eukaryotes and eubacteria. ...
 531-616 9.74e-46

PSP1 C-terminal conserved region; This region is present in both eukaryotes and eubacteria. The yeast PSP1 protein is involved in suppressing mutations in the DNA polymerase alpha subunit in yeast.


:

Pssm-ID: 461321  Cd Length: 86  Bit Score: 156.39  E-value: 9.74e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279314247 531 KRIYRLAQPAEITMLVTKSQDEAKAMLVCQTKVRQKKLPMEVVDAEYQWDRRKLTFYFIAERRIDFRELVRDLFKIYKTR 610
Cdd:pfam04468   1 KKILRKATEEDLERLEENREKEEEALEICREKIREHGLPMKLVDVEYQFDGSKLTFYFTAEGRVDFRELVKDLARVFKTR 80


                  ....*.
gi 1279314247 611 IWMCAV 616
Cdd:pfam04468  81 IELRQI 86
Herpes_BLLF1 super family cl37540
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 67-179 4.86e-04

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


The actual alignment was detected with superfamily member pfam05109:

Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 43.37  E-value: 4.86e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279314247  67 GSPPTNYIRP-GPDEIQAYVEGIPSGNGEGNSANGGKWSALGGLQWSSatsiwneknQQQVPNSGSKAVPR----ASPTP 141
Cdd:pfam05109 729 GTPPKNATSPqAPSGQKTAVPTVTSTGGKANSTTGGKHTTGHGARTST---------EPTTDYGGDSTTPRtrynATTYL 799

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1279314247 142 PPvsknddNNSSYER---EMSSPPGITGKLPVPVPPHPQYR 179
Cdd:pfam05109 800 PP------STSSKLRprwTFTSPPVTTAQATVPVPPTSQPR 834
 
Name Accession Description Interval E-value
PSP1 pfam04468
PSP1 C-terminal conserved region; This region is present in both eukaryotes and eubacteria. ...
 531-616 9.74e-46

PSP1 C-terminal conserved region; This region is present in both eukaryotes and eubacteria. The yeast PSP1 protein is involved in suppressing mutations in the DNA polymerase alpha subunit in yeast.


Pssm-ID: 461321  Cd Length: 86  Bit Score: 156.39  E-value: 9.74e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279314247 531 KRIYRLAQPAEITMLVTKSQDEAKAMLVCQTKVRQKKLPMEVVDAEYQWDRRKLTFYFIAERRIDFRELVRDLFKIYKTR 610
Cdd:pfam04468   1 KKILRKATEEDLERLEENREKEEEALEICREKIREHGLPMKLVDVEYQFDGSKLTFYFTAEGRVDFRELVKDLARVFKTR 80


                  ....*.
gi 1279314247 611 IWMCAV 616
Cdd:pfam04468  81 IELRQI 86
YaaT COG1774
Cell fate regulator YaaT, PSP1 superfamily (controls sporulation, competence, biofilm ...
 458-613 6.68e-39

Cell fate regulator YaaT, PSP1 superfamily (controls sporulation, competence, biofilm development) [Signal transduction mechanisms];


Pssm-ID: 441380  Cd Length: 269  Bit Score: 144.12  E-value: 6.68e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279314247 458 VEFKAGRTDLFYVAENSDVmvKKGDLVIVEADRGKDLGKVTndsIMPHQVQLlqqqqadamndgHRMSKEIhpKRIYRLA 537
Cdd:COG1774     7 VRFKKAGKIYYFDPGDLEL--KVGDKVIVETERGLEIGEVV---LTPREVRE------------EEVVEPL--KKVLRKA 67

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1279314247 538 QPAEITMLVTKSQDEAKAMLVCQTKVRQKKLPMEVVDAEYQWDRRKLTFYFIAERRIDFRELVRDLFKIYKTRIWM 613
Cdd:COG1774    68 TEEDLEKYEENREREKEAFEICREKIKEHGLDMKLVDVEYTFDGSKLIFYFTAEGRVDFRELVKDLAREFRTRIEL 143
RicT_YaaT_fam NF041131
regulatory iron-sulfur-containing complex subunit RicT; RicT in Bacillus subtilis (originally ...
 482-613 1.21e-33

regulatory iron-sulfur-containing complex subunit RicT; RicT in Bacillus subtilis (originally YaaT) was described as stage 0 sporulation protein affecting phosphorelay signals. However, RicT belongs to a iron-sulfur containing regulatory complex that is conserved also in many non-sporulating species, together with homologs of YmcA (RicA) and YlbF (RicF).


Pssm-ID: 469054  Cd Length: 213  Bit Score: 127.61  E-value: 1.21e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279314247 482 DLVIVEADRGKDLGKVTNDSIMPhqvqllqqqqADAMndghrMSKEIhpKRIYRLAQPAEITMLVTKSQDEAKAMLVCQT 561
Cdd:NF041131    1 DYVIVETERGLELGKVVLGPKEV----------SEEE-----LKKPL--KPIIRKATEEDLERYEENKEKEKEAFKICRE 63

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1279314247 562 KVRQKKLPMEVVDAEYQWDRRKLTFYFIAERRIDFRELVRDLFKIYKTRIWM 613
Cdd:NF041131   64 KIAEHGLDMKLIDVEYTFDRSKLIFYFTADGRVDFRELVKDLASIFRTRIEL 115
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 67-179 4.86e-04

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 43.37  E-value: 4.86e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279314247  67 GSPPTNYIRP-GPDEIQAYVEGIPSGNGEGNSANGGKWSALGGLQWSSatsiwneknQQQVPNSGSKAVPR----ASPTP 141
Cdd:pfam05109 729 GTPPKNATSPqAPSGQKTAVPTVTSTGGKANSTTGGKHTTGHGARTST---------EPTTDYGGDSTTPRtrynATTYL 799

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1279314247 142 PPvsknddNNSSYER---EMSSPPGITGKLPVPVPPHPQYR 179
Cdd:pfam05109 800 PP------STSSKLRprwTFTSPPVTTAQATVPVPPTSQPR 834
 
Name Accession Description Interval E-value
PSP1 pfam04468
PSP1 C-terminal conserved region; This region is present in both eukaryotes and eubacteria. ...
 531-616 9.74e-46

PSP1 C-terminal conserved region; This region is present in both eukaryotes and eubacteria. The yeast PSP1 protein is involved in suppressing mutations in the DNA polymerase alpha subunit in yeast.


Pssm-ID: 461321  Cd Length: 86  Bit Score: 156.39  E-value: 9.74e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279314247 531 KRIYRLAQPAEITMLVTKSQDEAKAMLVCQTKVRQKKLPMEVVDAEYQWDRRKLTFYFIAERRIDFRELVRDLFKIYKTR 610
Cdd:pfam04468   1 KKILRKATEEDLERLEENREKEEEALEICREKIREHGLPMKLVDVEYQFDGSKLTFYFTAEGRVDFRELVKDLARVFKTR 80


                  ....*.
gi 1279314247 611 IWMCAV 616
Cdd:pfam04468  81 IELRQI 86
YaaT COG1774
Cell fate regulator YaaT, PSP1 superfamily (controls sporulation, competence, biofilm ...
 458-613 6.68e-39

Cell fate regulator YaaT, PSP1 superfamily (controls sporulation, competence, biofilm development) [Signal transduction mechanisms];


Pssm-ID: 441380  Cd Length: 269  Bit Score: 144.12  E-value: 6.68e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279314247 458 VEFKAGRTDLFYVAENSDVmvKKGDLVIVEADRGKDLGKVTndsIMPHQVQLlqqqqadamndgHRMSKEIhpKRIYRLA 537
Cdd:COG1774     7 VRFKKAGKIYYFDPGDLEL--KVGDKVIVETERGLEIGEVV---LTPREVRE------------EEVVEPL--KKVLRKA 67

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1279314247 538 QPAEITMLVTKSQDEAKAMLVCQTKVRQKKLPMEVVDAEYQWDRRKLTFYFIAERRIDFRELVRDLFKIYKTRIWM 613
Cdd:COG1774    68 TEEDLEKYEENREREKEAFEICREKIKEHGLDMKLVDVEYTFDGSKLIFYFTAEGRVDFRELVKDLAREFRTRIEL 143
RicT_YaaT_fam NF041131
regulatory iron-sulfur-containing complex subunit RicT; RicT in Bacillus subtilis (originally ...
 482-613 1.21e-33

regulatory iron-sulfur-containing complex subunit RicT; RicT in Bacillus subtilis (originally YaaT) was described as stage 0 sporulation protein affecting phosphorelay signals. However, RicT belongs to a iron-sulfur containing regulatory complex that is conserved also in many non-sporulating species, together with homologs of YmcA (RicA) and YlbF (RicF).


Pssm-ID: 469054  Cd Length: 213  Bit Score: 127.61  E-value: 1.21e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279314247 482 DLVIVEADRGKDLGKVTNDSIMPhqvqllqqqqADAMndghrMSKEIhpKRIYRLAQPAEITMLVTKSQDEAKAMLVCQT 561
Cdd:NF041131    1 DYVIVETERGLELGKVVLGPKEV----------SEEE-----LKKPL--KPIIRKATEEDLERYEENKEKEKEAFKICRE 63

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1279314247 562 KVRQKKLPMEVVDAEYQWDRRKLTFYFIAERRIDFRELVRDLFKIYKTRIWM 613
Cdd:NF041131   64 KIAEHGLDMKLIDVEYTFDRSKLIFYFTADGRVDFRELVKDLASIFRTRIEL 115
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 67-179 4.86e-04

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 43.37  E-value: 4.86e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279314247  67 GSPPTNYIRP-GPDEIQAYVEGIPSGNGEGNSANGGKWSALGGLQWSSatsiwneknQQQVPNSGSKAVPR----ASPTP 141
Cdd:pfam05109 729 GTPPKNATSPqAPSGQKTAVPTVTSTGGKANSTTGGKHTTGHGARTST---------EPTTDYGGDSTTPRtrynATTYL 799

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1279314247 142 PPvsknddNNSSYER---EMSSPPGITGKLPVPVPPHPQYR 179
Cdd:pfam05109 800 PP------STSSKLRprwTFTSPPVTTAQATVPVPPTSQPR 834
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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