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Conserved domains on  [gi|1799623|dbj|BAA16093|]
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conserved hypothetical protein [Escherichia coli str. K-12 substr. W3110]

Protein Classification

DUF883 domain-containing protein( domain architecture ID 10013509)

DUF883 domain-containing protein similar to Escherichia coli protein ElaB, a putative membrane-anchored ribosome-binding protein that inhibits growth in stationary phase

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK10404 PRK10404
stress response protein ElaB;
1-101 6.92e-67

stress response protein ElaB;


:

Pssm-ID: 182432  Cd Length: 101  Bit Score: 195.83  E-value: 6.92e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799623     1 MSNQFGDTRIDDDLTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHEKP 80
Cdd:PRK10404   1 MSNQFGDTRIDDDLTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHEKP 80

                         90       100
                 ....*....|....*....|.
gi 1799623    81 WQGIGVGAAVGLVLGLLLARR 101
Cdd:PRK10404  81 WQGIGVGAAVGLVLGLLLARR 101
 
Name Accession Description Interval E-value
PRK10404 PRK10404
stress response protein ElaB;
1-101 6.92e-67

stress response protein ElaB;


Pssm-ID: 182432  Cd Length: 101  Bit Score: 195.83  E-value: 6.92e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799623     1 MSNQFGDTRIDDDLTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHEKP 80
Cdd:PRK10404   1 MSNQFGDTRIDDDLTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHEKP 80

                         90       100
                 ....*....|....*....|.
gi 1799623    81 WQGIGVGAAVGLVLGLLLARR 101
Cdd:PRK10404  81 WQGIGVGAAVGLVLGLLLARR 101
ElaB COG4575
Membrane-anchored ribosome-binding protein ElaB, inhibits growth in stationary phase, YqjD ...
 9-84 1.47e-22

Membrane-anchored ribosome-binding protein ElaB, inhibits growth in stationary phase, YqjD/DUF883 family [Translation, ribosomal structure and biogenesis];


Pssm-ID: 443632 [Multi-domain]  Cd Length: 108  Bit Score: 83.84  E-value: 1.47e-22
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1799623    9 RIDDDLTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHEKPWQGI 84
Cdd:COG4575  16 DLEADLKALVDDLEELLKSTADDAGEKAAELREKAEAALDEARERLSEAEDAAVERAREAADAADDYVHENPWQSV 91
DUF883 pfam05957
DUF883 N-terminal domain; This family consists of several hypothetical bacterial proteins of ...
 10-60 8.87e-05

DUF883 N-terminal domain; This family consists of several hypothetical bacterial proteins of unknown function. The N-terminal domain found in this entry is related to pfam05532.


Pssm-ID: 461786  Cd Length: 53  Bit Score: 37.11  E-value: 8.87e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1799623     10 IDDDLTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQASDS 60
Cdd:pfam05957   3 LIDDLKSLLADLEELLKDAADEAGEEADALRERLESRLKRARERLSDAQDA 53
 
Name Accession Description Interval E-value
PRK10404 PRK10404
stress response protein ElaB;
1-101 6.92e-67

stress response protein ElaB;


Pssm-ID: 182432  Cd Length: 101  Bit Score: 195.83  E-value: 6.92e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1799623     1 MSNQFGDTRIDDDLTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHEKP 80
Cdd:PRK10404   1 MSNQFGDTRIDDDLTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHEKP 80

                         90       100
                 ....*....|....*....|.
gi 1799623    81 WQGIGVGAAVGLVLGLLLARR 101
Cdd:PRK10404  81 WQGIGVGAAVGLVLGLLLARR 101
ElaB COG4575
Membrane-anchored ribosome-binding protein ElaB, inhibits growth in stationary phase, YqjD ...
 9-84 1.47e-22

Membrane-anchored ribosome-binding protein ElaB, inhibits growth in stationary phase, YqjD/DUF883 family [Translation, ribosomal structure and biogenesis];


Pssm-ID: 443632 [Multi-domain]  Cd Length: 108  Bit Score: 83.84  E-value: 1.47e-22
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1799623    9 RIDDDLTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHEKPWQGI 84
Cdd:COG4575  16 DLEADLKALVDDLEELLKSTADDAGEKAAELREKAEAALDEARERLSEAEDAAVERAREAADAADDYVHENPWQSV 91
PRK10132 PRK10132
hypothetical protein; Provisional
 10-81 1.45e-05

hypothetical protein; Provisional


Pssm-ID: 182259  Cd Length: 108  Bit Score: 40.23  E-value: 1.45e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1799623    10 IDDDLTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKR------VSQAsdsyyyrAKQAVYRADDYVHEKPW 81
Cdd:PRK10132  17 IQNDVNQLADSLESVLKSWGSDAKGEAEAARRKAQALLKETRARmhgrtrVQQA-------ARDAVGCADTFVRERPW 87
DUF883 pfam05957
DUF883 N-terminal domain; This family consists of several hypothetical bacterial proteins of ...
 10-60 8.87e-05

DUF883 N-terminal domain; This family consists of several hypothetical bacterial proteins of unknown function. The N-terminal domain found in this entry is related to pfam05532.


Pssm-ID: 461786  Cd Length: 53  Bit Score: 37.11  E-value: 8.87e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1799623     10 IDDDLTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQASDS 60
Cdd:pfam05957   3 LIDDLKSLLADLEELLKDAADEAGEEADALRERLESRLKRARERLSDAQDA 53
DUF883_C pfam19029
DUF883 C-terminal glycine zipper region; This family corresponds to the C-terminal presumed ...
 72-84 2.78e-03

DUF883 C-terminal glycine zipper region; This family corresponds to the C-terminal presumed transmembrane helix found in DUF883 proteins. The helix contains a glycine zipper motif suggestive of dimerization.


Pssm-ID: 465949  Cd Length: 30  Bit Score: 32.52  E-value: 2.78e-03
                          10
                  ....*....|...
gi 1799623     72 ADDYVHEKPWQGI 84
Cdd:pfam19029   1 TDDYVHENPWQTI 13
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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