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Conserved domains on  [gi|173115|gb|AAA35187|]
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beta-galactosidase, partial [Saccharomyces cerevisiae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TYA super family cl03073
Ty transposon capsid protein; Ty are yeast transposons. A 5.7kb transcript codes for p3 a ...
 17-103 1.63e-45

Ty transposon capsid protein; Ty are yeast transposons. A 5.7kb transcript codes for p3 a fusion protein of TYA and TYB. The TYA protein is analogous to the gag protein of retroviruses. TYA a is cleaved to form 46kd protein which can form mature virion like particles. This entry corresponds to the capsid protein from Ty1 and Ty2 transposons.


The actual alignment was detected with superfamily member pfam01021:

Pssm-ID: 425992  Cd Length: 384  Bit Score: 150.49  E-value: 1.63e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 173115      17 AYASVTSKEVPSNQDPLAVSASNLPEFDRDSTKVNSQQETTPGTSAVPENHHHVSPQPASVPPPQNGQYQQHGMMTPNKA 96
Cdd:pfam01021   1 ACASVTSKEVHTNQDPLDVSASKLQEYDKDSTKANSQQTTTPGSSAVPENHHHASPQPASVPPPQNGPYSQQCMMTPNQA 80


                  ....*..
gi 173115      97 MASNWAH 103
Cdd:pfam01021  81 NPSGWPF 87
 
Name Accession Description Interval E-value
TYA pfam01021
Ty transposon capsid protein; Ty are yeast transposons. A 5.7kb transcript codes for p3 a ...
 17-103 1.63e-45

Ty transposon capsid protein; Ty are yeast transposons. A 5.7kb transcript codes for p3 a fusion protein of TYA and TYB. The TYA protein is analogous to the gag protein of retroviruses. TYA a is cleaved to form 46kd protein which can form mature virion like particles. This entry corresponds to the capsid protein from Ty1 and Ty2 transposons.


Pssm-ID: 425992  Cd Length: 384  Bit Score: 150.49  E-value: 1.63e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 173115      17 AYASVTSKEVPSNQDPLAVSASNLPEFDRDSTKVNSQQETTPGTSAVPENHHHVSPQPASVPPPQNGQYQQHGMMTPNKA 96
Cdd:pfam01021   1 ACASVTSKEVHTNQDPLDVSASKLQEYDKDSTKANSQQTTTPGSSAVPENHHHASPQPASVPPPQNGPYSQQCMMTPNQA 80


                  ....*..
gi 173115      97 MASNWAH 103
Cdd:pfam01021  81 NPSGWPF 87
 
Name Accession Description Interval E-value
TYA pfam01021
Ty transposon capsid protein; Ty are yeast transposons. A 5.7kb transcript codes for p3 a ...
 17-103 1.63e-45

Ty transposon capsid protein; Ty are yeast transposons. A 5.7kb transcript codes for p3 a fusion protein of TYA and TYB. The TYA protein is analogous to the gag protein of retroviruses. TYA a is cleaved to form 46kd protein which can form mature virion like particles. This entry corresponds to the capsid protein from Ty1 and Ty2 transposons.


Pssm-ID: 425992  Cd Length: 384  Bit Score: 150.49  E-value: 1.63e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 173115      17 AYASVTSKEVPSNQDPLAVSASNLPEFDRDSTKVNSQQETTPGTSAVPENHHHVSPQPASVPPPQNGQYQQHGMMTPNKA 96
Cdd:pfam01021   1 ACASVTSKEVHTNQDPLDVSASKLQEYDKDSTKANSQQTTTPGSSAVPENHHHASPQPASVPPPQNGPYSQQCMMTPNQA 80


                  ....*..
gi 173115      97 MASNWAH 103
Cdd:pfam01021  81 NPSGWPF 87
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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