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pfam08447: PAS_3 
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PAS fold
The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.
Statistics
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PSSM-Id: 254805
View PSSM: pfam08447
Aligned: 123 rows
Threshold Bit Score: 39.6708
Threshold Setting Gi: 75486977
Created: 29-Mar-2013
Updated: 4-Apr-2013
Structure
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Program:
Drawing:
Aligned Rows:

pfam08447 is classified as a model that may span more than one domain.
pfam08447 is not assigned to any domain superfamily.
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
4F3L_A      263 FLFLDHRAPPIIGYLPFEV--LGtsGYDYYHVDDLENLAKCH-EHl--MQYGkGKSCYYRFLTKGQQWIWLQTHYYITYh 337
gi 81769348  60 YVALNPTHERWVGIRSEDLrgKK--PEDILTAVDAAKVRQHYaDc---VRFGkTISYEQCLQF-QGVSTWWSTTLTPLR- 132
gi 81543763  77 VISANPLFLNAVGYRLEELt----gKHHRIFCSPAECQSQQYqQFwtsLAQGkSHSGTFMRYKKDGSLLVLEATYFPIK- 151
gi 81739978 285 IITANANFLGTLGYSLAEIk----gHHHSMFVEPAERDGAAYrEFwaaLNRGqYQAAEYKRIGKGGKEVYIQASYNPIL- 359
gi 81463634  30 ITYANQSFCMVAGYTLNDMlgQT--HNMVRHPYMPPQAFEDLwKt---IRKGePWKGIVKNRCANGDHYWVDAYVSPIM- 103
gi 81726076  26 IKYASAHFNEVAGFEEGELigKP--HNVVRHPDMPKQAFKDLwSh---LKAGkHWMGMVKNRRKNGGYYWVDAFASPIK- 99
gi 81543689  30 IKYASKEFCDVAGYTLDELvnQP--HNMVRHPDMPPEAFKDMwEh---LKAGkSWMGMVKNRCKNGDHYWVDAFASPIK- 103
gi 1703222   30 ITHANDTFVQVSGYTLQELqgQP--HNMVRHPDMPKAAFADMwFt---LKKGePWSGIVKNRRKNGDHYWVRANAVPMV- 103
gi 75490351  33 ILAGNDVFQRVSGYGWGDLlgAP--HKIIRHPDTPRAVFRILwDa---LGNGhPMGGYVKNRARNGDHYWVFGVILPME- 106
gi 81791074  69 VLTCNEAFARMRGQSVKEIegSS--IVSLYAPEDQQMVKDKLk----iTDSTgFCSCQAKMMRKDGTIFPVQIDVVGLK- 141
                        90
                ....*....|...
4F3L_A      338 QWNSRPEFIVCTH 350
gi 81769348 133 DTNSKIYRLIGTS 145
gi 81543763 152 -TDGKVSSVMKIA 163
gi 81739978 360 DLNGKPFKVVKYA 372
gi 81463634 104 -INGQVAEFQSVR 115
gi 81726076 100 -YNGEIVEYQSVR 111
gi 81543689 104 -ENGKVVEYQSVR 115
gi 1703222  104 -REGKISGYMSIR 115
gi 75490351 107 ------GGYLSVR 113
gi 81791074 142 DENGQIMYRIVTV 154
Citing CDD
Marchler-Bauer A et al. (2013), "CDD: conserved domains and protein three-dimensional structure.", Nucleic Acids Res. 41(D1):D384-52.
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