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pfam07654: C1-set 
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Immunoglobulin C1-set domain
Statistics
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PSSM-Id: 254335
View PSSM: pfam07654
Aligned: 128 rows
Threshold Bit Score: 50.7118
Threshold Setting Gi: 121039
Created: 29-Mar-2013
Updated: 4-Apr-2013
Structure
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Program:
Drawing:
Aligned Rows:
pfam07654 is a member of the superfamily cl11960.
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3LQZ_A       93 PKEPV-EL-GQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLP-RTDYSFHKFHYLTFV---PSAEDFYDCRVE 166
gi 121041   231 SPTKE-EMtQNEVSITCMVKGFYPPDIYVEWQMNGQP--QENYKNTPPTmDTDGSYFLYSKLNVKkekWQQGNTFTCSVL 307
gi 121044   234 PPPRE-QMsKKKVSLTCLVTNFFSEAISVEWERNGEL--EQDYKNTPPIlDSDGTYFLYSKLTVDtdsWLQGEIFTCSVV 310
2GJ7_B      132 PPSRE-EMtKNQVSLTCLVKGFYPSDIAVEWESNGQP--ENNYKTTPPVlDSDGSFFLYSKLTVDksrWQQGNVFSCSVM 208
gi 75054555 240 APHPD-ELsKSKVSVTCLVKDFYPPEINIEWQSNGQPELETKYSTTQAQqDSDGSYFLYSKLSVDrnrWQQGTTFTCGVM 318
gi 121042   233 PPSRD-ELsKSKVSVTCLIINFFPADIHVEWASNRVPVSEKEYKNTPPIeDADGSYFLYSKLTVDksaWDQGTVYTCSVM 311
gi 121055   238 GPPTE-QLtEQTVSLTCLTSGFLPNDIGVEWTSNGHI--EKNYKNTEPVmDSDGSFFMYSKLNVErsrWDSRAPFVCSVV 314
gi 121048   235 PPPEE-EMtKKQVTLTCMVTDFMPEDIYVEWTNNGKT--ELNYKNTEPVlDSDGSYFMYSKLRVEkknWVERNSYSCSVV 311
gi 121049   240 PPPAE-EMtKKEFSLTCMITGFLPAEIAVDWTSNGRT--EQNYKNTATVlDSDGSYFMYSKLRVQkstWERGSLFACSVV 316
1O0V_A      229 ATPEWpGS-RDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRkTKGSGFFVFSRLEVTraeWEQKDEFICRAV 307
                        90
                ....*....|
3LQZ_A      167 HWGLd-QPLL 175
gi 121041   308 HEGLhnHHTE 317
gi 121044   311 HEALhnHHTQ 320
2GJ7_B      209 HEALhnHYTQ 218
gi 75054555 319 HEALhnHYTQ 328
gi 121042   312 HEALhnHVTQ 321
gi 121055   315 HEGLhnHHVE 324
gi 121048   312 HEGLhnHHTT 321
gi 121049   317 HEVLhnHLTT 326
1O0V_A      308 HEAAs---PS 314
Citing CDD
Marchler-Bauer A et al. (2013), "CDD: conserved domains and protein three-dimensional structure.", Nucleic Acids Res. 41(D1):D384-52.
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