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pfam01852: START 
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START domain
Statistics
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PSSM-Id: 250915
View PSSM: pfam01852
Aligned: 18 rows
Threshold Bit Score: 158.329
Threshold Setting Gi: 21363000
Created: 28-Mar-2013
Updated: 4-Apr-2013
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

pfam01852 is a member of the superfamily cl14643.
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3P0L_A         13 LQQGEEAMQKALGILSNQEGWKKESq-qDNGDKVMSKVVPd---VGKVFRLEVVVDQPMERLYEELVERMea-mgEWNPN 87
gi 130768      10 EEQFREACAELQRPALSGAAWELLV---ETQGISVYRLLDqq-tGLYAYKVFGVLEDCLPDLLADVYMDLay-rkQWDQY 84
gi 75018684   344 IDKLALEQLKYALAGAEDNVWSLFAedgPMRMYTRQIEDEgg-vPVDPLKAIHAVDGVTALEFMHYFYDAry-kmQWDHT 421
gi 75220729   159 SIADETLTEFISKATGTAVEWVQMPg-mKPGPDSIGIVAIshgcTGIAARACGLVGLDPT-RVAEILKDKp----CWLRD 232
gi 74958087    61 RVWEDSDYEKVKNLCEDSEGWVEVYk-kKDITICTQNIEKs---SYQMIKAIAQLPDVSATVVYDVLHDSay-raKWDKY 135
gi 313104315 1323 HFLQDCVDGLFKEVKEKFKGWVSYSt-sEQAELSYKKVs-----EGPPLRLWRSVIEVPA-VPEEILKRLlkeqhLWDVD 1395
gi 90110072   818 LYMEENIQDLLRDAAERFKGWMSVPgpqHTELACRKAP------DGHPLRLWKASTEVAA-PPAVVLHRVlreraLWDED 890
gi 74964104   246 TLRECLDQVEELMRDSRLGGWKTLR---SANPTVLQGPd-----NYFLVRSEFNKFPALV-LFNIAWKDMl----KWNTQ 312
gi 218511969   52 EVFAEVEAIFNDENYLSHAGWFKDEs-nNEGDVVYAKDTP----HGRMVTISTELPMPVEDVMKETWNGMea-lpEWNQN 125
gi 6225683    240 IRQGKEATAVVDQILAQEENWKFERs-nEYGDTVYTIEVPf---HGKTFILKTFLPCPAELVYQEVILQPer-mvLWNKT 314
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3P0L_A         88 VKeiKVLQKIGKD--TFITHELAAEAAgnLVGP-RDFVSVRCAKR-------RGSTCVLAGMATDFGNMPE----QKGVI 153
gi 130768      85 VK--ELYEKECSG--ETVVYWQVKYPF--PMSN-RDYVYVRQRQEld---feGQKVHVILAQSTSEPQFPE----KSGVI 150
gi 75018684   422 LEamSVVEHISPD--SVVLHQKHKTVW--PAAP-RESLFVSHIRRvdehkrdGAHDLYIVCNRDIQRADVPl--gSSSSV 494
gi 75220729   233 CRslDIVNVLSTAngGTLELIYMQLYAptTLAPaRDFWMLRYTSVm------EDGSLVICERSLNNTQNGPsmppSPHFV 306
gi 74958087   136 MIkqETIGTINPN--NDVCYYSLNSVS--PIRP-RDFVMQRSWLE-------TDKDRLICSHSVCHEDYPP----AKGCI 199
gi 313104315 1396 LLdsKVIEILDSQ--TEIYQYVQNSMA--PHPA-RDYVVLRTWRTn-----lPKGACALLLTSVDHDRAPVv------GV 1459
gi 90110072   891 LLraQVLEALMPG--VELYHYVTDSMA--PHPC-RDFVVLRMWRSd-----lPRGGCLLVSQSLDPEQPVPe-----SGV 955
gi 74964104   313 VIegKMIAHLDNA--TDLYYSVSAPAMrgYISS-RDFLDLRKIKLd-----sSADVYTGYFVSVESNLCPNn--gNPKIV 382
gi 218511969  126 INfaARIAAPTSN--FDIVTYGNNDVL--VVSG-REFVSARIWRK-------VGDGFILASRSVTVPSFKSk---HKGKV 190
gi 6225683    315 VTacQILQRVEDN--TLVSYDVSSGAAggVVSP-RDFVNVRRIER-------RRDRYLSSGIATTHCSKPP----THKYV 380
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
3P0L_A        154 RAEHGPTCMVLHPLAGSPs---------kTKLTWLLSIDLKGWLp-KSIINQVLSQTQVDFANH--LRKRLESHPAS 218
gi 130768     151 RVKHYKQRLAIQSDGKRG-----------SKVFMYYFDNPGGQIp-SWVINWAAKNGVPNFLKD--MVKACQNYKKT 213
gi 75018684   495 RVGLTVSMICETTVKDPHidrkltrddvkCNIIYVSQVHPGGWVp-TAALRHVYKKEYPKFLRT--FTEFVKKNVKG 568
gi 75220729   307 RAEILPSGYLIRPCEGGG-----------SILHIVDHFDLEPWSv-PEVLRSLYESSTLLAQRT--TMAALRYLRQI 369
gi 74958087   200 RATVLISGYLIKEKEQG------------CEVIYISHSDPKGKLptWLVNRVTKVVAPKVIKKL--HKACLGYPEWK 262
gi 313104315 1460 RVNVLLSRYLIEPCGPGK-----------SKLTYMCRVDLRGHMp-EWYTKSFGHLCAAEVVKI--RDSFSNQNTET 1522
gi 90110072   956 RALMLTSQYLMEPCGLGR-----------SRLTHICRADLRGRSp-DWYNKVFGHLCAMEVAKIrdSFPTLQAAGPE 1020
gi 74964104   383 RGHNFPSMIRTLKDEAGV-----------TYFEWLMKTDLKGGLp-----RRLVHSGMVNYFSE--HVKRMNEFAET 441
gi 218511969  191 RAHLHLAGARFRPNPENPe---------tTLTDVVMLADLKGYLp-KMIVNQVIGRIMIMDTVT--NRRHFQNLKAK 255
gi 6225683    381 RGENGPGGFIVLKSANNPr---------vCTFVWILNTDLKGRLp-RYLIHQSLGATMFEFAFH--LRQRVGELGAR 445
Citing CDD
Marchler-Bauer A et al. (2013), "CDD: conserved domains and protein three-dimensional structure.", Nucleic Acids Res. 41(D1):D384-52.
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