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Entrez CDD Structure Protein Help
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pfam00103: Hormone_1 
Somatotropin hormone family
Statistics
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PSSM-Id: 109170
View PSSM: pfam00103
Aligned: 17 rows
Created: 29-Sep-2008
Updated: 30-Oct-2008
Structure
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Aligned Rows:
pfam00103 is a member of the superfamily cl07831.
Sequence Alignment?
Format: Row Display: Color Bits: Type Selection:
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130988    17 LLMSNLFLWEK----VSSAPINASeav--lsdLKDLFDNATVLSGEMSKLGVIMRKEFFMNSFSSETfnkiilDLHKSTe 90
gi 1172526   16 LLVSNLLLWEN----MASKPTVLVs-------TEDLYHRLVEQSHNTFIKAADVYREFDINFAKRSW------MKDRIL- 77
gi 84028242  17 LLVSNLLLWEN----TASAMRAKLlnvhnytsYGDTWNQAIKISQDMNQYISDLSTHVKIFYAQGRG-------FERRT- 84
gi 464475    17 LVVSNLLLWEK----AASIPACMVedggcwdpLREAFNSATQRAETLRNLSDQLYVEFFQNQFSSRQfadlssQLIRKDe 92
gi 131022    20 LLMSNILLWEN----VASVPRHASgagrgemsLHGLLDHAIILAHNVTELIAEMNSVFLEDVLYKPGr-----WFPERDl 90
gi 59800152   8 TKLHLAVLCL-----VVSCHAIG---------LSDLMERASQRSDKLHSLSTSLTKDLDSHFPPMGR------VMMPRP- 66
gi 417534     9 SLFLTALLCL-----ASQGYAVG---------LGDMLERASQLSDKLHSLSTSLTNDLDTHFPPMGK------ILMPRP- 67
gi 20141664   9 LLLAFGLLCLSwlqeGSAFPTIP---------LSRLFDNAMLRARRLYQLAYDTYQEFEEAYILKEQk----ySFLQNPq 75
gi 130299     9 LLLAFALLCLPwlqeAGAVQTVP---------LSRLFDHAMLQAHRAHQLAIDTYQEFEETYIPKDQk----ySFLHDSq 75
gi 267016     4 VVLMLSVLSLG----VSSQPITD---------GQRLFSIAVSRVQHLHLLAQRLFSDFESSLQTEEQr-----QLNKIFl 65
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130988    91 nitkafNSCHTVPINVPETVEDVRKTSFEEFLKMVLHMLLAWKEPLKHLVTELSALPEC--PYRILSKAEAIEAKNKDLL 168
gi 1172526   78 ------PLCHTASIHVPENREEVHEIKTEDLLRSIINISVSWKEPLKHFVSAVTDLPGA--SASMRKKAVDMKDKNLIIL 149
gi 84028242  85 ------TRCHTSSLSSPENKEQAQQFQLEVLLGLSHSLLQAWLNPLHHLWAEMCDRLGS--TPPTLYKALMLKESNIKLL 156
gi 464475    93 tvlkagTYCHSNRAK-PKSR--GVNIDIEEYLKMSINFCGFMDQPLFHLVIELSAMEGV--PETILSKAKDLEENNRQLL 167
gi 131022    91 ------TACHRSPFTIAVSKEGTQQRLGVFLVKEMIGMLETWTFSLYHIANEMSHMEEP--PDEIISRAKNIEEKIKELM 162
gi 59800152  67 ------SMCHTSSLQTPKDKEQALKVSENELISLARYLLLAWNDPLLLLSSEAPTLPHTpsNGDISSKIRELQDYSKSLG 140
gi 417534    68 ------SMCHTASLQTPHDKDQALRVPESELLSIARALLLSWNDPLLLLASEAPTLSHPq-NGAIYSKTRELQDQSNSLS 140
gi 20141664  76 -----tSLCFSESIPTPSNRVKTQQKSNLELLRISLLLIQSWLEPVQLLR----SVFAN--SLVYGASDSNVYRHLKDLE 144
gi 130299    76 -----tSFCFSDSIPTPSNMEETQQKSNLELLRISLLLIESWLEPVRFLR----SMFAN--NLVYDTSDSDDYHLLKDLE 144
gi 267016    66 -----qDFCNSDYIISPIDKHETQRSSVLKLLSISYRLVESWEFPSRSLAGG--SAPRN----QISPKLSELKTGIHLLI 134
                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 130988   169 EYIIRIISKVN--PAIKENEDYPTWSDLDSLKSADKETQFFALYMFSFCLRIDLETVDFLVNFLKCLLLYDD--VC 240
gi 1172526  150 EGLQKIFNRTQtkVEENENFDYPAWSGLKDLQSSDEDTHLFAIYNLCRCFKSDIHKIDTYLKVLRCRVVFKN--EC 223
gi 84028242 157 DAIKNIAKKGNf--EINEKANYTAWSELGFLQSPNRDTRYFAFYNLFHCLKKDSNNVEMYLKLLKCRLIRS---KC 227
gi 464475   168 DDLRWILTKVF--PTAEIKEEFPSWDYLSFLKSSNKNHKFLAIFNLSSCLDYDTQVHYTLSQILNCLITGKD---C 238
gi 131022   163 DVLKGILNKIQ--PGSPQNERFPMWNELAYLRSPDEERRHFAFTNLFQCLLQDSRKFDSKVRLLKCRLIYNR--DC 234
gi 59800152 141 DGLDIMVNKMGp-SSQYISSIPFKGGDLG----NDKTSRLINFHFLMSCFRRDSHKIDSFLKVLRCRATNMRpeTC 211
gi 417534   141 SGLDRLIHKIGs-SSKALSPLPLQGGDLG----SDKNSRLINFYFLLSCFRRDSHKIDNFLKLLRCRAAKQd--RC 209
gi 20141664 145 EGIQTLMWRLEdgSPRTGQIFNQSYSKFD--TKSHNDDALLKNYGLLYCFRKDMDKVETFLRIVQCR-SVEG--SC 215
gi 130299   145 EGIQTLMGRLEdgSRRTGQILKQTYSKFDTN--SHNHDALLKNYGLLYCFRKDMDKVETFLRMVQCR-SVEG--SC 215
gi 267016   135 RANEDGAELFPdsSALQLAPYGDYYHSPG------TDESLRRTYELLACFKKDMHKVETYLTVAKCRLSPEAn--C 202
Citing CDD
Marchler-Bauer A et al. (2009), "CDD: specific functional annotation with the Conserved Domain Database.", Nucleic Acids Res. 37(D)205-10.
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