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pfam00046: Homeobox 
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Homeobox domain
Statistics
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PSSM-Id: 249538
View PSSM: pfam00046
Aligned: 182 rows
Threshold Bit Score: 47.4746
Threshold Setting Gi: 75334130
Created: 28-Mar-2013
Updated: 4-Apr-2013
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

pfam00046 is a member of the superfamily cl00084.
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|...
2DA3_A       18 KRLRTTITPEQLEILYQKYLL-DSNPTRKMLDHIAHEV-----GLKKRVVQVWFQNTRARERK 74
gi 61217396  11 KCGRWNPTAEQVKVLTELFRAgLRTPSTEQIQRISTHLsa-fgKVESKNVFYWFQNHKARERH 72
gi 61217376  21 KCGRWNPTVEQLKILTDLFRAgLRTPTTDQIQKISTELsf-ygKIESKNVFYWFQNHKARERQ 82
gi 61217290  73 VSSRWNPTPDQLRVLEELYRQgTRTPSADHIQQITAQLrr-ygKIEGKNVFYWFQNHKARERQ 134
gi 61217449  58 ATLRWNPTPEQITTLEELYRSgTRTPTTEQIQQIASKLrk-ygRIEGKNVFYWFQNHKARERL 119
gi 61217291  11 SSSRWNPTKDQITLLENLYKEgIRTPSADQIQQITGRLra-ygHIEGKNVFYWFQNHKARQRQ 72
gi 75301684  41 ANARWTPTKEQIAVLEGLYRQgLRTPTAEQIQQITARLre-hgHIEGKNVFYWFQNHKARQRQ 102
gi 75287598  24 STTRWCPTPEQLMMLEEMYRGgLRTPNAAQIQQITAHLst-ygRIEGKNVFYWFQNHKARDRQ 85
gi 61217281  52 PKPRWNPKPEQIRILEAIFNSgMVNPPREEIRRIRAQLqe-ygQVGDANVFYWFQNRKSRSKH 113
gi 75334130  51 PKPEWKPNQHQAQILEELFIGgTVNPSLTSIKQITIKLqsygeEVDDADVYKWFHNRKYSRKP 113
Citing CDD
Marchler-Bauer A et al. (2013), "CDD: conserved domains and protein three-dimensional structure.", Nucleic Acids Res. 41(D1):D384-52.
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