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cl09099: P-loop_NTPase Superfamily (this model has been removed)
P-loop containing Nucleoside Triphosphate Hydrolases
Members of the P-loop NTPase domain superfamily are characterized by a conserved nucleotide phosphate-binding motif, also referred to as the Walker A motif (GxxxxGK[S/T], where x is any residue), and the Walker B motif (hhhh[D/E], where h is a hydrophobic residue). The Walker A and B motifs bind the beta-gamma phosphate moiety of the bound nucleotide (typically ATP or GTP) and the Mg2+ cation, respectively. The P-loop NTPases are involved in diverse cellular functions, and they can be divided into two major structural classes: the KG (kinase-GTPase) class which includes Ras-like GTPases and its circularly permutated YlqF-like; and the ASCE (additional strand catalytic E) class which includes ATPase Binding Cassette (ABC), DExD/H-like helicases, 4Fe-4S iron sulfur cluster binding proteins of NifH family, RecA-like F1-ATPases, and ATPases Associated with a wide variety of Activities (AAA). Also included are a diverse set of nucleotide/nucleoside kinase families.
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Taxonomy: root
PubMed: 1018 links
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Protein: Related Protein
Related Structure
Statistics
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Accession: cl09099
PSSM Id: 214148
Name: P-loop_NTPase
Created: 8-Feb-2008
Updated: 29-Oct-2012
Superfamily
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Curated CD Hierarchy
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cd00267::ABC_ATPase: root of the domain hierarchy.  Click the red icon to see the full hierarchy, then click on a node of interest within the hierarchy to see the complete information for that domain model.
cd00046::DEXDc: root of the domain hierarchy.  Click the red icon to see the full hierarchy, then click on a node of interest within the hierarchy to see the complete information for that domain model.
cd00079::HELICc: single member domain hierarchy. Click the red icon to see the complete information for this domain model.
cd00227::CPT: single member domain hierarchy. Click the red icon to see the complete information for this domain model.
cd01120::RecA-like_NTPases: root of the domain hierarchy.  Click the red icon to see the full hierarchy, then click on a node of interest within the hierarchy to see the complete information for that domain model.
cd02019::NK: root of the domain hierarchy.  Click the red icon to see the full hierarchy, then click on a node of interest within the hierarchy to see the complete information for that domain model.
cd01983::Fer4_NifH: root of the domain hierarchy.  Click the red icon to see the full hierarchy, then click on a node of interest within the hierarchy to see the complete information for that domain model.
cd00009::AAA: single member domain hierarchy. Click the red icon to see the complete information for this domain model.
cd00882::Ras_like_GTPase: root of the domain hierarchy.  Click the red icon to see the full hierarchy, then click on a node of interest within the hierarchy to see the complete information for that domain model.
cd09639::Cas3_I: single member domain hierarchy. Click the red icon to see the complete information for this domain model.
cd09673::Cas3_Cas2_I-F: single member domain hierarchy. Click the red icon to see the complete information for this domain model.
cd09696::Cas3_I: single member domain hierarchy. Click the red icon to see the complete information for this domain model.
cd09708::Csf4_U: single member domain hierarchy. Click the red icon to see the complete information for this domain model.
cd09710::Cas3_I-D: single member domain hierarchy. Click the red icon to see the complete information for this domain model.
cd01849::YlqF_related_GTPase: root of the domain hierarchy.  Click the red icon to see the full hierarchy, then click on a node of interest within the hierarchy to see the complete information for that domain model.
Imported CD
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Citing CDD
Marchler-Bauer A et al. (2013), "CDD: conserved domains and protein three-dimensional structure.", Nucleic Acids Res. 41(D1):D384-52.
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cd00267:ABC_ATPasecd03213:ABCG_EPDRcd03214:ABC_Iron-Siderophores_B12_Hemincd03215:ABC_Carb_Monos_IIcd03216:ABC_Carb_Monos_Icd03217:ABC_FeS_Assemblycd03218:ABC_YhbGcd03219:ABC_Mj1267_LivG_branchedcd03220:ABC_KpsT_Wztcd03221:ABCF_EF-3cd03222:ABC_RNaseL_inhibitorcd03223:ABCD_peroxisomal_ALDPcd03224:ABC_TM1139_LivF_branchedcd03225:ABC_cobalt_CbiO_domain1cd03226:ABC_cobalt_CbiO_domain2cd03227:ABC_Class2cd03228:ABCC_MRP_Likecd03229:ABC_Class3cd03230:ABC_DR_subfamily_Acd03231:ABC_CcmA_heme_exportercd03232:ABCG_PDR_domain2cd03233:ABCG_PDR_domain1cd03234:ABCG_Whitecd03235:ABC_Metallic_Cationscd03236:ABC_RNaseL_inhibitor_domain1cd03237:ABC_RNaseL_inhibitor_domain2cd03238:ABC_UvrAcd03239:ABC_SMC_headcd03240:ABC_Rad50cd03241:ABC_RecNcd03242:ABC_RecFcd03243:ABC_MutS_homologscd03244:ABCC_MRP_domain2cd03245:ABCC_bacteriocin_exporterscd03246:ABCC_Protease_Secretioncd03247:ABCC_cytochrome_bdcd03248:ABCC_TAPcd03249:ABC_MTABC3_MDL1_MDL2cd03250:ABCC_MRP_domain1cd03251:ABCC_MsbAcd03252:ABCC_Hemolysincd03253:ABCC_ATM1_transportercd03254:ABCC_Glucan_exporter_likecd03255:ABC_MJ0796_LolCDE_FtsEcd03256:ABC_PhnC_transportercd03257:ABC_NikE_OppD_transporterscd03258:ABC_MetN_methionine_transportercd03259:ABC_Carb_Solutes_likecd03260:ABC_PstB_phosphate_transportercd03261:ABC_Org_Solvent_Resistantcd03262:ABC_HisP_GlnQcd03263:ABC_subfamily_Acd03264:ABC_drug_resistance_likecd03265:ABC_DrrAcd03266:ABC_NatA_sodium_exportercd03267:ABC_NatA_likecd03268:ABC_BcrA_bacitracin_resistcd03269:ABC_putative_ATPasecd03270:ABC_UvrA_Icd03271:ABC_UvrA_IIcd03272:ABC_SMC3_eukcd03273:ABC_SMC2_eukcd03274:ABC_SMC4_eukcd03275:ABC_SMC1_eukcd03276:ABC_SMC6_eukcd03277:ABC_SMC5_eukcd03278:ABC_SMC_barmotincd03279:ABC_sbcCDcd03280:ABC_MutS2cd03281:ABC_MSH5_eukcd03282:ABC_MSH4_eukcd03283:ABC_MutS-likecd03284:ABC_MutS1cd03285:ABC_MSH2_eukcd03286:ABC_MSH6_eukcd03287:ABC_MSH3_eukcd03288:ABCC_SUR2cd03289:ABCC_CFTR2cd03290:ABCC_SUR1_Ncd03291:ABCC_CFTR1cd03292:ABC_FtsE_transportercd03293:ABC_NrtD_SsuB_transporterscd03294:ABC_Pro_Gly_Betainecd03295:ABC_OpuCA_Osmoprotectioncd03296:ABC_CysA_sulfate_importercd03297:ABC_ModC_molybdenum_transportercd03298:ABC_ThiQ_thiamine_transportercd03299:ABC_ModC_likecd03300:ABC_PotA_Ncd03301:ABC_MalK_Ncd03369:ABCC_NFT1 cd00046:DEXDccd00268:DEADc cd00544:CobUcd00561:CobA_CobO_BtuRcd00983:recAcd00984:DnaB_Ccd01120:RecA-like_NTPasescd01121:Smscd01122:GP4d_helicasecd01123:Rad51_DMC1_radAcd01124:KaiCcd01125:repAcd01126:TraG_VirD4cd01127:TrwBcd01128:rho_factorcd01129:PulE-GspEcd01130:VirB11-like_ATPasecd01131:PilTcd01132:F1_ATPase_alphacd01133:F1-ATPase_betacd01134:V_A-ATPase_Acd01135:V_A-ATPase_Bcd01136:ATPase_flagellum-secretory_path_IIIcd01393:recA_likecd01394:radB cd00071:GMPKcd00464:SKcd01428:ADKcd01672:TMPKcd01673:dNKcd02019:NKcd02020:CMPKcd02021:GntKcd02022:DPCKcd02023:UMPKcd02024:NRK1cd02025:PanKcd02026:PRKcd02027:APSKcd02028:UMPK_likecd02029:PRK_likecd02030:NDUO42 cd00477:FTHFScd01983:Fer4_NifHcd02032:Bchl_likecd02033:BchXcd02034:CooCcd02035:ArsAcd02036:MinDcd02037:MRP-likecd02038:FleN-likecd02040:NifHcd02042:ParAcd02117:NifH_likecd03108:AdSScd03109:DTBScd03110:Fer4_NifH_childcd03111:CpaE_likecd03112:CobW_likecd03113:CTGscd03114:ArgK-likecd03115:SRPcd03116:MobB cd00066:G-alphacd00154:Rabcd00157:Rhocd00876:Rascd00877:Rancd00878:Arf_Arlcd00879:Sar1cd00880:Era_likecd00881:GTP_translation_factorcd00882:Ras_like_GTPasecd01850:CDC_Septincd01851:GBPcd01852:AIG1cd01853:Toc34_likecd01860:Rab5_relatedcd01861:Rab6cd01862:Rab7cd01863:Rab18cd01864:Rab19cd01865:Rab3cd01866:Rab2cd01867:Rab8_Rab10_Rab13_likecd01868:Rab11_likecd01869:Rab1_Ypt1cd01870:RhoA_likecd01871:Rac1_likecd01873:RhoBTBcd01874:Cdc42cd01875:RhoGcd01876:YihA_EngBcd01878:HflXcd01879:FeoBcd01881:Obg_likecd01882:BMS1cd01883:EF1_alphacd01884:EF_Tucd01885:EF2cd01886:EF-Gcd01887:IF2_eIF5Bcd01888:eIF2_gammacd01889:SelB_eukcd01890:LepAcd01891:TypA_BipAcd01892:Miro2cd01893:Miro1cd01894:EngA1cd01895:EngA2cd01896:DRGcd01897:NOGcd01898:Obgcd01899:Ygr210cd01900:YchFcd04101:RabL4cd04102:RabL3cd04103:Centaurin_gammacd04104:p47_IIGP_likecd04105:SR_betacd04106:Rab23_likecd04107:Rab32_Rab38cd04108:Rab36_Rab34cd04109:Rab28cd04110:Rab35cd04111:Rab39cd04112:Rab26cd04113:Rab4cd04114:Rab30cd04115:Rab33B_Rab33Acd04116:Rab9cd04117:Rab15cd04118:Rab24cd04119:RJLcd04120:Rab12cd04121:Rab40cd04122:Rab14cd04123:Rab21cd04124:RabL2cd04126:Rab20cd04127:Rab27Acd04128:Spg1cd04129:Rho2cd04130:Wrch_1cd04131:Rndcd04132:Rho4_likecd04133:Rop_likecd04134:Rho3cd04135:Tc10cd04136:Rap_likecd04137:RheBcd04138:H_N_K_Ras_likecd04139:RalA_RalBcd04140:ARHI_likecd04141:Rit_Rin_Riccd04142:RRP22cd04143:Rhes_likecd04144:Ras2cd04145:M_R_Ras_likecd04146:RERG_RasL11_likecd04147:Ras_dvacd04148:RGKcd04149:Arf6cd04150:Arf1_5_likecd04151:Arl1cd04152:Arl4_Arl7cd04153:Arl5_Arl8cd04154:Arl2cd04155:Arl3cd04156:ARLTS1cd04157:Arl6cd04158:ARD1cd04159:Arl10_likecd04160:Arfrp1cd04161:Arl2l1_Arl13_likecd04162:Arl9_Arfrp2_likecd04163:Eracd04164:trmEcd04165:GTPBP1_likecd04166:CysN_ATPScd04167:Snu114pcd04168:TetM_likecd04169:RF3cd04170:EF-G_bactcd04171:SelBcd04172:Rnd3_RhoE_Rho8cd04173:Rnd2_Rho7cd04174:Rnd1_Rho6cd04175:Rap1cd04176:Rap2cd04177:RSR1cd08771:DLP_1cd09912:DLP_2cd09913:EHDcd09914:RocCORcd09915:Ragcd11383:YfjPcd11384:RagA_likecd11385:RagC_like cd01849:YlqF_related_GTPasecd01854:YjeQ_EngCcd01855:YqeHcd01856:YlqFcd01857:HSR1_MMR1cd01858:NGP_1cd01859:MJ1464cd04178:Nucleostemin_like