Conserved Protein Domain Family
PBP2_PnhD_2

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cd13572: PBP2_PnhD_2 
Substrate binding domain of uncharacterized ABC-type phosphonate-like transporter; contains the type 2 periplasmic binding fold
This subfamily includes putative periplasmic binding component of an ABC transport system similar to alkylphosphonate binding domain PnhD. These domains are found in PnhD-like proteins that are predicted to function as initial receptors in hypophosphite, phosphonate, or phosphate ABC transport in archaea and eubacteria. They belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.
Statistics
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PSSM-Id: 270290
Aligned: 14 rows
Threshold Bit Score: 316.177
Created: 27-Sep-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative
Feature 1:putative chemical substrate binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to other members of the phosphonate-binding protein family.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                     #               # #                
YP_958718     24 VQADTFVFTAIPdedetklverFRGVADYLQEQLDvEVRYIPvkSYAAAVSAFRNNQVQLAWFGGLSGVQarrlvpGSEA 103 Marinobacter aq...
YP_001362519  57 GGRGSLTIGAIPdqdpevlqrlYAAVADSVAQATGlAVTYRPvtDYGAAVSAFRTGDLDLVWFGGLTGVQarlqapGARV 136 Kineococcus rad...
YP_134641     24 TATPTLTVGIVPdvdpdtaieqNTELAAYLATELDvETELRTaaDYAGMVQAMVAGQVDIAYYGGVSYILahh-raGAKP 102 Haloarcula mari...
YP_522877     25 QAQAVFKVTAIPdesptelarkAAPLVKYLERILGrPVEFTPvtDYAASVEALVNKQVDMAWYGGFTFVQanv-rsGGKV 103 Rhodoferax ferr...
NP_894612     26 QTEKTLRIGAIPdqnperlnrlYGLLSSELSKELNvPVRYKAvtNYPAAVSAFRTDSLDLVWFGGLTGVQarlqkpGAEV 105 Prochlorococcus...
NP_742985     22 QAAETLRVSAIPdeaptelqrkFKPLGEYLAKQLGmEVKFVPvaDYPAVVESLAADRLDLAWLGGFTFVQvhlkdpTATP 101 Pseudomonas put...
ZP_01858512   40 ANGEAFTIGVIPaqtegamesaMDKLQDYLTDELGrEVKVEVypDYNGVVEAMNYDKIDMAYFGPLSYVIahe-ksGAKA 118 Bacillus sp. SG-1
NP_946735     30 DKPSKLVVGLLPgesaptvmrlNEPLRAYLEKKLGlPVELVVgaNYAATGEALRFGRLDIAYLGPVTYLLrar-saKLEP 108 Rhodopseudomona...
ZP_01446249   19 ASAQTLYFSAIPdedetrlverFSKVADYLEGELGvDVQFVPvkSYAASVTAFRNDQIQLAWFGGLTGVQarlavpEARA 98  Roseovarius sp....
YP_001101441  26 PDPETLKVALLPdenastviknNKPLELYLEKALGkKIELIVttDYSSMIEAMRHGRIDLAYFGPLSYVLarq-ksEIEP 104 Herminiimonas a...
Feature 1                    #                                        ###                        
YP_958718    104 IAq---gVEDEAFeTYFIANTSTgiqpadsldeledELRGk----TFTFGSkgSTSGRLMPEFYIrdvfnea--pdslfs 174 Marinobacter aq...
YP_001362519 137 VAq---rDIDEDFhSVFVVNTATglsas----ddltPLAGl----RFTYGSqtSTSGALMPAYFLaqqgvd---prgfpg 202 Kineococcus rad...
YP_134641    103 VAvg-srNGQTEWhSVFIAPSDSdltgm---advveTASEt----ELVFGDplSTSGTVMPTYHLrteysl---htdafa 171 Haloarcula mari...
YP_522877    104 VPlv-qrEEDEKFrSVFITSDPSikt--------laDLKGk----SVSFGSqsSTSGHLMPRSFLlqahid---pdkdfk 167 Rhodoferax ferr...
NP_894612    106 IAq---rDIDAKFtSVFIANTKSgikplk-sqsglqQLNGk----RFTFGSesSTSGRLMPQHFLqqagvqm--ndfsgg 175 Prochlorococcus...
NP_742985    102 LVqr--eQDAQFTsKFITANPDVks---------lsDLKGk----SFAFGSisSTSGSLMPRYFMlkqdnik--peeyfs 164 Pseudomonas put...
ZP_01858512  119 IItq-liDGEPFYhSYIITHNDNpwn-------sieELLEnsqevNFAFGDpnSTSGSLIPSIELqdrgvyqsddehefe 190 Bacillus sp. SG-1
NP_946735    109 FArpshaIVGPTFqAVIIVPADSpak-------tlaDLKGg----EIAFGDpaSTSGTWVPRYQLlaaglv----sgrdy 173 Rhodopseudomona...
ZP_01446249   99 IAq---gKEDPIFvSYFIANTETgleps---dsfpaEAQGm----SFTFGAktSTSGRLMPEYWIreetgea--peaffd 166 Roseovarius sp....
YP_001101441 105 FAai-kqKGSTTYqAVLIVNTGAgin-------siaDIANk----DVAYGDkaSTSSHLIPKSMLaeggll----agtqy 168 Herminiimonas a...
Feature 1               #                 #                             #                        
YP_958718    175 RVGFSGNHTRTLRLVEAGTYEVGALNfqvwekelengnidtdaVQVIWRTPTyPDYQWTIRGdvdeRFGDGFKQKVTEAL 254 Marinobacter aq...
YP_001362519 203 GPGHSGSHDATLQLVASGSYQAGVLNeqvwasrs-eagevdpaVRLYARTPAyHDYHWVLGPqavdRLGEELPQRLSDYF 281 Kineococcus rad...
YP_134641    172 QVTHVGAHDATAATVGRTSGVVGALNariyarll--aedavdgVQELWRTPGfPDYPWAVAP----SLEATTADAVQTAF 245 Haloarcula mari...
YP_522877    168 RVAYSGAHDATIAAVAAGKVDAGALNisvwekfvkegkvdaskVKVFYTTPGyFDYNWTVHA----DMPVALRDKLTQAF 243 Rhodoferax ferr...
NP_894612    176 KPGFSGSHDATIALVQSGSFDAGALNesvwesaqkngridpakVKVIWRTPPyADYHWLAQPnldkKFGDGFTEKLKSTL 255 Prochlorococcus...
NP_742985    165 RVAYSGAHDATVAWVQAGKVDGGVLNasvwqklvdagkvdttkVKVFATTPTyFDYNWTVRG----NMDPALKQKIKKAF 240 Pseudomonas put...
ZP_01858512  191 SVRFTGSHDATALAVQNQQVDAGAIDsaifnqlvesgkvdgeqIKTIWESDKlFQYPWAVHQ----NTDEKTIEALQSAF 266 Bacillus sp. SG-1
NP_946735    174 TLRVLGAHDSVALAVANKKVAAGGLSmpiynrlikenkidakaVRVLAESPAiPEYMWTFRE----GLDPEFKEQIRKAF 249 Rhodopseudomona...
ZP_01446249  167 RVGFSGDHSQTLRLVASGAWQVGALNfavydkavaegapevetAKVIWQTPPyPDYNWTIRGdvdaRFGDGFADKVQAAL 246 Roseovarius sp....
YP_001101441 169 REHFVGAHDAVALAVQNGHAQAGGLSkpifevlvqrgmidpnkVKVLAESKPfPQYPWTMRS----NLKPELKAKIRTVF 244 Herminiimonas a...
Feature 1                                          
YP_958718    255 LNLDDPalles-----fprsGFIPASNDDYEPIR 283 Marinobacter aquaeolei VT8
YP_001362519 282 LALSLDdpddravldlfgaqRFIATQASNYDQIE 315 Kineococcus radiotolerans SRS30216
YP_134641    246 TTLDSKgrtdil--dqqavdQYVGVSHDAFTSLE 277 Haloarcula marismortui ATCC 43049
YP_522877    244 LSLDRNtaegkeilelqratRFIATKADNYKGIE 277 Rhodoferax ferrireducens T118
NP_894612    256 TGLKKSsksqekilellgasSFVDADQNQYITIE 289 Prochlorococcus marinus str. MIT 9313
NP_742985    241 LDLDPSnpehkaildlqaasRFIETKPENYKGTE 274 Pseudomonas putida KT2440
ZP_01858512  267 LAIEDQevlda-----fgatGFTEASNEDYESIR 295 Bacillus sp. SG-1
NP_946735    250 ISVDDPealkv-----fraeAFIPAVDSDVDRVR 278 Rhodopseudomonas palustris CGA009
ZP_01446249  247 IGMDDPellat-----fpreAFIPAANEDFQPIE 275 Roseovarius sp. HTCC2601
YP_001101441 245 LEMKDPevlkp-----fkaeGFGPASDKDYDVVR 273 Herminiimonas arsenicoxydans

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