Conserved Protein Domain Family
SH3_DNMBP_N3

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cd11796: SH3_DNMBP_N3 
Third N-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba
DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin and key regulatory proteins of the actin cytoskeleton. It plays an important role in regulating cell junction configuration. The four N-terminal SH3 domains of DNMBP binds the GTPase dynamin, which plays an important role in the fission of endocytic vesicles. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies.
Statistics
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PSSM-Id: 212730
Aligned: 9 rows
Threshold Bit Score: 91.6474
Created: 31-May-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
peptide ligand
Feature 1:peptide ligand binding site [polypeptide binding site]
Evidence:
  • Comment:based on the binding of peptide ligands to the SH3 domains of other superfamily members
  • Comment:SH3 domains typically bind proline-rich ligands, preferentially to PxxP motifs.
  • Citation:PMID 7664083
  • Citation:PMID 7735837
  • Comment:flanking hinge and loops (RT and n-Src) confer sequence specificity for ligand residues outside the core binding motif

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              # #  #   #                 ##             # ## 
Q6XZF7        149 QARALMGLSAQLDEELDFREGDVITIIGVPEPGWFEGELE-GRRGIFPEGFV 199  human
XP_002609089  149 QAEVLQDLQAQLDEELTLYQGDIVNITRVVDQDWYEGEIA-GRTGIFPSAFV 199  Florida lancelet
CAG12597      156 QARALMNLHAQLNEELDFCEGDLIIITGLPEPGWFQGELD-SRRGIFPEGFV 206  spotted green pufferfish
XP_002937226  148 QARAILGLSAQLEEELDFREGDIITITGVPESGWFEGELN-GRRGIFPEGFV 198  western clawed frog
XP_002405958  138 WARALQDLSAQLDDEMSLARGDLVHVTQILDKDWFWGECN-GLSGKFPRNFV 188  black-legged tick
XP_421697     148 QARALMGLSAQLEEELDFREGDVINIVGIPEPGWFEGELR-GRRGIFPEGFV 198  chicken
EFX81866      148 RARVLQHLVAQLPEELDLKKGDEVIVTGEAEDGWLRGESH-GKTGIFPSGFI 198  common water flea
XP_003378842  159 RAVVLKSMKAALPEEIDLNEGEQVVIEEFLDKYWCRGTCQ-NRRGIFPRSFV 209  Trichinella spiralis
EFN64992      140 RAKVKTTLKAQLDEELDLSAGEVVTVIEILDDGWCRGITEdGREGIFPEGFI 191  Camponotus floridanus

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