2NPN,3ND1


Conserved Protein Domain Family
Precorrin-6A-synthase

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cd11643: Precorrin-6A-synthase 
Click on image for an interactive view with Cn3D
Precorrin-6A synthase (also named CobF)
Precorrin-6A synthase participates in the pathway toward the biosynthesis of cobalamin (vitamin B12). There are two distinct cobalamin biosynthetic pathways in bacteria. The aerobic pathway requires oxygen, and cobalt is inserted late in the pathway; the anaerobic pathway does not require oxygen, and cobalt insertion is the first committed step towards cobalamin synthesis. This model represents CobF, the precorrin-6A synthase, an enzyme specific to the aerobic pathway. After precorrin-4 is methylated at C-11 by CobM to produce precorrin-5, CobF catalyzes the removal of the extruded acyl group in the subsequent step, and the addition of a methyl group at C-1. The product of this reaction is precorrin-6A, which gets reduced by an NADH-dependent reductase to yield precorrin-6B. This family includes enzymes in GC-rich Gram-positive bacteria, alpha proteobacteria and Pseudomonas-related species.
Statistics
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PSSM-Id: 381170
Aligned: 96 rows
Threshold Bit Score: 248.566
Created: 3-Feb-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 16 residues -Click on image for an interactive view with Cn3D
Feature 1:SAM binding site [chemical binding site]
Evidence:
  • Comment:SAM = S-adenosyl-L-methionine
  • Structure:2NPN; Corynebacterium diphtheriae precorrin-6A synthase CobF binds S-adenosyl-L-methionine (SAM), contacts at 4A
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             #                                                                          
2NPN_A         7 VIGIGTGsPEFLTLQAISGLRHAQAIVALDKGEQKSDLLALRQKIVdth-apgTPIYAVTDPERDRNPd------NYEEE 79  Corynebacterium...
WP_113893518   6 LIGMGPGgPEYLTTQAIEALRKVDVFFILEKQGRGKDALAEARLRIldawrgpGNYRVVKAPSPPRDRat----eDYLDV 81  Roseiarcus ferm...
WP_009147795   6 LIGIGPGgPDLVTTEAIAAMRAVDVFFLLDKDGPGKESLIAAREAImasylepGSYRVARAPSPARARta----eGYLEV 81  Thiorhodovibrio...
WP_092620977   6 LIGLGPGdPDDLTGRAIAAINQVDVFFLLDKAGPGKDELIQVRETIlrrfatdKPYRLVHAPSPERDRaa----aDYLGA 81  Roseospirillum ...
CCG07255       6 LIGIGPGdPEMVTVQAINTMKTVDVFFLLEKAGRGKESLLAVRRDIleryageRPYRVVTAASPQRNRen----pNYAEG 81  Rhodospirillum ...
WP_092814245   6 VIGIGAGdPSDLTLRAIEAMRAVDVFFFMDKDGAGKENLIAFRQEVltravpeASYRSVHATSPERPKdg----rDYEKG 81  Afifella marina
EPY02046       7 LIGIGPGdPDALTLAAIKAISRADVFFFLEKEGEGKDQLIRFRQQIlqthrgdRPYRTASAALPQRDRda----nGYVGA 82  Phaeospirillum ...
WP_014778145   6 LIGMGPGgHQYLTIQAIETLKQVDVFFMLEKEGRGKEDLLRMRQDIlshylgdTGYRVVTATSPARRMda----aGYKEG 81  Thiocystis viol...
WP_058557538   6 LIGIGPGhPDFLTLEGLNALRCVDLFLILEKEGRGKDELTALRHDIlqrvrpdGGYRELSVPSPARPRavdqdaaAYHAV 85  Thiohalocapsa s...
RKX61177       7 LIGMGPGdPKYLTLYAVETIKKLKLFLIPAKTGKKSDLTQMRKKIIsfv-krkKDYRIIEIPFPERKKg-----dKYKNL 80  Thermodesulfoba...
Feature 1                                      ###  ##                              ##           
2NPN_A        80 VRRWHAERAHLLASTIRERtpddGAVAFLVWGDPSLYDSTLRIIEHxrn----ledLHADVKVIPGITAVQVLTAEHGIL 155 Corynebacterium...
WP_113893518  82 VADWHARKAEILADLIAEHlsegEAGGVLVWGDPALYDSSISILRKlqd----dgrVQIALQVIPAVSSLHLLAARHAIP 157 Roseiarcus ferm...
WP_009147795  82 VQDWHARKRALFAELIARElkngQTGALLIWGDPSLYDQSVSLFAElvaeqppgspDALRLEVIPGLTAVQVLTARHAIA 161 Thiorhodovibrio...
WP_092620977  82 VEDWRQKKIDLIGRLIAEEledgQTGGMLLWGDPALYDGTIQILHDlka----agrDDFQFTVIPGITSLQALTARHRVA 157 Roseospirillum ...
CCG07255      82 VIEWRDERLTIIGDLIANEltegQVGAFLVWGDPSLYDGMIESLSLlqr----qgrQDFDFTVIPGITSVQVLTARHRIP 157 Rhodospirillum ...
WP_092814245  82 IDWWRGERRRIFREMLSELgp-eETGGFLIIGDPALYDGTTQILHElaa-----egFEIDFEVVTGITSLQTLAARHRIP 155 Afifella marina
EPY02046      83 VQEWHRRRTEIIGTLIDTEmsdgETAGLLIWGDPALYDGTIQHLRDlie----sgrNDLCFEVIPGITSVQMLVARHKIP 158 Phaeospirillum ...
WP_014778145  82 VQSWHDEKRALFEGLIADEladgQNGALLLWGDPSLYDQTVSLIADlta----rsdGALDFEIIPGITSVQVLTARHKIP 157 Thiocystis viol...
WP_058557538  86 VDAWHAEKRRLFRGVLEREladgEAAGLMLWGDPTLYDQTISMLTRvvq----elpEPLGLSVIPGISAVQVLCARHRIP 161 Thiohalocapsa s...
RKX61177      81 VEEWREIKANILKNILQKEt--eKEAGFIVWGDPSLYDGYIEIFKNlq------kkLNFEIEIIPGISAFQVLSAKHKIS 152 Thermodesulfoba...
Feature 1                                     ##                   # ##                          
2NPN_A       156 INriGEAIHITTGRNLPEtsaKDRRNCVVXLDGKTAWQDVAt-eHTYXWWGAFLGTEQQVLRKGYVHEIGAQVAELKQQL 234 Corynebacterium...
WP_113893518 158 LHaiGGELLVTTARRLLAgaaRGHDAVAVMLDSNAAFNTIDp-eDFDIYWGAYLGTEHEIVASGPLREVGPALAETVARE 236 Roseiarcus ferm...
WP_009147795 162 LNriGEPIVITTGRQLEQadpATVDNTVVMLDGRGAFRHCLg-qGLFIHWGANLGTADEVLIAGPLDTVAEDIITTLERL 240 Thiorhodovibrio...
WP_092620977 158 MNrvGGRITVTPGRALEKmapEAVDNVFVMLDTRHAYKHFIg-hDLMIYWGAYLGLPDETLIAGPLDQVAGQVEAEFQRL 236 Roseospirillum ...
CCG07255     158 LNriAETITITTGRLLEDvapADVTNAVVMLDSRQAFRRFAe-tGHEVYWGALLGSPDERLIAGPVAEVADAIEGELEAV 236 Rhodospirillum ...
WP_092814245 156 LNriGEEITVTTARLLAEtepEKISNTLVMLDGRATFLHFKe-tDLYIYWGAYLGMEEEILIAGPLKEKADEIAETIETS 234 Afifella marina
EPY02046     159 LNriGESITITTGRQIEQadpASITNAVVMLDSRSAFRRLEgsgEVDIYWGGDVGGPDERLISGPLDAVADQIDAAIALQ 238 Phaeospirillum ...
WP_014778145 158 LNrvGENITITTGRHVETcdpAEIDNAVVMLDYNASFQRYTg-qNMDIYWGGYLGCPDEVLVAGPVDDVLADLLQTKSEV 236 Thiocystis viol...
WP_058557538 162 LNrvGESVSIITGREAEQvdpASVHNTVVMLDYNASFRRFVg-qDMDIYWGGYLGAPDEVLVAGRLDDVHDELLRLKAAL 240 Thiohalocapsa s...
RKX61177     153 LTqiAGTTIFTTPRQLRKm-kNIECNTVVFLDNYKTYKIFAn-sDLKIYWGAYLGTEKEVLFSGRLKDIIEELIRLRDKL 230 Thermodesulfoba...
Feature 1               ###     
2NPN_A       235 RTEHGWIXDTYLLRE 249 Corynebacterium diphtheriae
WP_113893518 237 KQRHGWILDIYLLRR 251 Roseiarcus fermentans
WP_009147795 241 RGERGWLMDIYLLRR 255 Thiorhodovibrio sp. 970
WP_092620977 237 RAAKGWIMDCYLLRR 251 Roseospirillum parvum
CCG07255     237 RAQNGWVMDTYILRK 251 Rhodospirillum photometricum DSM 122
WP_092814245 235 RARQGWIMDAYLLRR 249 Afifella marina
EPY02046     239 RARKGWIMDNYLLRR 253 Phaeospirillum fulvum MGU-K5
WP_014778145 237 RDAKGWLMDIYLLRR 251 Thiocystis violascens
WP_058557538 241 REQKGWLMDTYLLRR 255 Thiohalocapsa sp. ML1
RKX61177     231 KKEKGWIMETYFLIP 245 Thermodesulfobacteria bacterium

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