Conserved Protein Domain Family
Cas3_I-D

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cd09710: Cas3_I-D 
CRISPR/Cas system-associated protein Cas3; Distinct diverged subfamily of Cas3 helicase domain
CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Diverged DNA helicase Cas3'; signature gene for Type I and subtype I-D
Statistics
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PSSM-Id: 187841
Aligned: 4 rows
Threshold Bit Score: 451.633
Created: 6-Feb-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
YP_327282  34 HQWALHDalTTGVSGAFVNDAPTGAGKTLSWLAPTISEGld--tVAVYPTNALIEDQRKNIELMLddidggDDVHLLAVS 111 Natronomonas phara...
YP_324659  34 HQAATLQalRNPNIDVVFNTAMTGDGKSLAAYLEVLQGEfs--aIGLYPTNELARDQEIQIQGYIevfkpeNQPRVVRLS 111 Anabaena variabili...
NP_485604   7 HQVDVFE--QSKDADIILDLAPTGTGKTKAGLTVLKHQQnk-saIYIAPTNALIEQQTEAAKEFVrdanlrHVVKSASAK 83  Nostoc sp. PCC 7120
YP_503297  25 HQVTTRAvmKERDEFFLFITAPTGAGKTESWFVPALTGEdtgvfFALYPTNALALDQYRTISSLRdtlapsRQVEFLDAE 104 Methanospirillum h...
YP_327282 112 SdtlqdEYAtdyPAESNGEILSYLlrd------afqRSETVILLTNPDIFVLLRRRIY--HNRTDGI--------NFFEV 175 Natronomonas phara...
YP_324659 112 GadlevYAEn--EGLKKGQAIGTL------------TSQREALLTNPDIFHYLHRGAY--IIRSDSPdklwgkidKDFDL 175 Anabaena variabili...
NP_485604  84 DikswpNDK---VGSRSGEKLYNVlrnpatvfpdigANTPIILVTNPDIFYYATFFAYnnLDRGNIAag----fyTKFST 156 Nostoc sp. PCC 7120
YP_503297 105 RlttlrDEYp--VRVSKGEVITHIlqk-------msTQGGGIIVTNPDIFVLALKNVF--IDPYVESav-----rTCVSS 168 Methanospirillum h...
YP_327282 176 AVVDEFHRATRKEQNTllflldemQDADTEICRlSYLVFLSATPDEELAGRFEEA--VSAPYYPLTGFgwretphpamaa 253 Natronomonas phara...
YP_324659 176 FIFDEFHVFAAPQIASvin---tmLLIRCTNRR-KKFLFLSATPDSNLIDRLKLAgfRCQEINPIAQEkyqfpdnpe--- 248 Anabaena variabili...
NP_485604 157 VIFDEFHLYDAKQLVGmlfylaysQVFRFFENG-RKVVLLTATPEPACELALQNLkqAGVKIARIDGEag---------- 225 Nostoc sp. PCC 7120
YP_503297 169 VIFDEFHLYDLKQTDFllf--lfdDLISSKHCSiRKFIFLSATPSKGLIEKIRDV--IGGDIIIADEFcde--------- 235 Methanospirillum h...
YP_327282 254 ddqpaiafapgqlptAYRPVLPPLELRLQP-ATTFQTA----SRLAEqrEETIdqLSQGRTVLMLDGLHEVDEIYRLLQd 328 Natronomonas phara...
YP_324659 249 -------leqqlktqGWRQVARTISLDFIPlEPSFKASevwlKENSNliLEQFqqYPGSKGAIILNSIAAVKRLTPFFQe 321 Anabaena variabili...
NP_485604 226 -------------ntSFLPSQTAVNLELRP-KPDIKEEw--lAELAAevIQRFreRPDENGAVILDSLDNINRLSDLLRq 289 Nostoc sp. PCC 7120
YP_503297 236 ------------kevDQRLILPPVEMSFIP-AKKFSSG----EIFISrfFEFEpfLSGVRTAIIFDSAIEVAVVSEFLR- 297 Methanospirillum h...
YP_327282 329 --SELG-TIERIDGFHRADIADklnRFDTLVSNAAVEVGVDFDTD---------QVLFSAHSAATFFQRLGRLR 390 Natronomonas pharaonis D...
YP_324659 322 ilQPHGlQVGENTGLSGKAEKErslSADLVLGTSTIDVGVDFKIN---------FLIFESSDAGNFIQRLGRLG 386 Anabaena variabilis ATCC...
NP_485604 290 --QGLGdDIGRITGPAPKKDREramQCQIILATSTVDVGFNFERHpkpkrqnldWLIFSARDRAAFWQRIGRVG 361 Nostoc sp. PCC 7120
YP_503297 298 --ANTSyRVCEQSGFRKDSMDE---PFDILVGNKAVEVGIDFKGDys-----iqHLIFSAFSVSEFLQRFGRLR 361 Methanospirillum hungate...
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