4ASZ


Conserved Protein Domain Family
PTKc_TrkB

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cd05093: PTKc_TrkB 
Click on image for an interactive view with Cn3D
Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B
PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a receptor PTK (RTK) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly expressed in the nervous system and in some non-neural tissues. It plays important roles in cell proliferation, differentiation, and survival. BDNF/Trk signaling plays a key role in regulating activity-dependent synaptic plasticity. TrkB also contributes to protection against gp120-induced neuronal cell death. TrkB overexpression is associated with poor prognosis in neuroblastoma (NB) and other human cancers. It acts as a suppressor of anoikis (detachment-induced apoptosis) and contributes to tumor metastasis. The TrkB subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.
Statistics
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PSSM-Id: 270675
Aligned: 4 rows
Threshold Bit Score: 598.948
Created: 29-Jun-2007
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 26 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Comment:includes ATP binding and substrate binding sites
  • Comment:Based on the structures of other PTK family members bound to substrate peptides and ATP analogs.
  • Citation:PMID 9312016

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                    #####   #                 # #                                       
4ASZ_A         9 HIKRHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVegd 88  human
AAD00001     531 HIKRHNIVLKRELGEGAFGKVFLAECYNLYPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVegd 610 African clawed ...
Q91987       528 HIKRHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVegd 607 chicken
NP_001184090 507 HIKRHNILLKRELGEGAFGKVFLAECYNLSPDQEKILVAVKTLKEASESGRADFHREAELLTNLQHEHIVKFYGVCVesd 586 zebrafish
Feature 1             ####  ##                                                     #   ## #      
4ASZ_A        89 PLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGnp--ptELTQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVGENLL 166 human
AAD00001     611 PLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGnr--paELTQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVGENLL 688 African clawed ...
Q91987       608 PLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGnr--paELTQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVGENLL 685 chicken
NP_001184090 587 PLIMVFEYMKHGDLNKFLRAHGPDAVLMADGqqsllvELTQPQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVGENLL 666 zebrafish
Feature 1            #                 #####        #                                 #          
4ASZ_A       167 VKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEVIECITQG 246 human
AAD00001     689 VKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEVIECITQG 768 African clawed ...
Q91987       686 VKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEVIECITQG 765 chicken
NP_001184090 667 VKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRRFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEVIECITQG 746 zebrafish
Feature 1                                                          
4ASZ_A       247 RVLQRPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAKASPVYLD 296 human
AAD00001     769 RVLQRPRTCPKEVYDLMLGCWQREPHMRLNIKEIHSLLQNLSKASPVYLD 818 African clawed frog
Q91987       766 RVLQRPRTCPKEVYDLMLGCWQREPHMRLNIKEIHSLLQNLAKASPVYLD 815 chicken
NP_001184090 747 RVLQRPRTCPKEVYDLMLGCWQREPYMRLNIKEIHNLLQSLAKASPVYLD 796 zebrafish

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