1SM1,2GYA,1BXY


Conserved Protein Domain Family
Ribosomal_L30

?
cd01658: Ribosomal_L30 
Click on image for an interactive view with Cn3D
Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa. L30 binds the 23SrRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome. The eukaryotic L30 members have N- and/or C-terminal extensions not found in their prokaryotic orthologs. L30 is closely related to the ribosomal L7 protein found in eukaryotes and archaea.
Statistics
?
PSSM-Id: 100100
Aligned: 102 rows
Threshold Bit Score: 49.7271
Created: 6-Mar-2002
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
23S rRNA
Conserved site includes 21 residues -Click on image for an interactive view with Cn3D
Feature 1:23S rRNA binding site [nucleic acid binding site]
Evidence:
  • Structure:1SM1_X; Deinococcus radiodurans 50S ribosomal protein L30 binds 23S rRNA
    View structure with Cn3D

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1              ## ## ###  ##  ### #  #    ##  ### ##           
1SM1_X         1 MKIKLVRSVIGRPGNQVKTVQALGLRKIGDSREVSDTPAVRGMVKTVKHLLEVQ 54  Deinococcus radiodurans
XP_001742135  17 HLVRLVRSPIRNPESIRNTLKALGLHRRNQTVIHKNTSAVNGQLAKVLHLVDVR 70  Monosiga brevicollis MX1
NP_001018597  60 HIVTRVKSTMRRPYWEKKVVKSLGLMKSHEPRVHKNTPSVNNLLKIIKHLVRIE 113 zebrafish
XP_416895     66 HIVTRIKSVIGRPYWEKKIVHDLGLDKAHQPRLHKNIPSVNSRLKIIKHLIRIQ 119 chicken
NP_001016148  68 HLVTRIKSGVGRPYWEKKTLELLGLQKAHKTVVHKNIPAVNAKLKTVKHLVRVQ 121 western clawed frog
AAF36169      87 HIVTRIKSTRRRPYWEKDIIKMLGLEKAHTPQVHKNIPSVNAKLKVVKHLIRFV 140 human
XP_001625103  24 HAVTLIRSGIRQPWWEKRTLKVLGLTKLHKTVVHKNTPAVNGLLRSVKHLVDVT 77  starlet sea anemone
NP_218646      5 VRITLVRSTIGQREPVRRTVRSLGLRKLHSMVEKDGSPAVLGMVRAVSHLVRVE 58  Treponema pallidum subsp. pallidum str. N...
YP_845695      5 IQVKLVRSPIGRPEKHRKVLQALGLTRLNKTVNLHATPAVAGAVKKVIHMVEVK 58  Syntrophobacter fumaroxidans MPOB
YP_001618595   3 LRVRQKASNIGQVEHTRKIIKGLGLRGPGSEVVVANTPSFRGMVKKVLHLVEVE 56  Sorangium cellulosum 'So ce 56'

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap