3RKO


Conserved Protein Domain Family
NDH_I_N

?
TIGR01770: NDH_I_N 
Click on image for an interactive view with Cn3D
proton-translocating NADH-quinone oxidoreductase, chain N
This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Statistics
?
PSSM-Id: 273795
Aligned: 15 rows
Threshold Bit Score: 313.808
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
?
Program:
Drawing:
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
3RKO_N         8 LIALLPLLIVGLTVVVVMLSIAW----RRN--HFLNATLSVIGLNAALVSLWFVGQAGAMDVTP---LM----RVDGFAM 74  Escherichia col...
AAF24782      11 FEIIIPEFFLTTILLILLLFGVFykknQNMqkILIIKNITTIIIYLLLILLILTLNITNISNNIlngVL----IINNFTQ 86  potato late bli...
AAG17811       5 YFFLLPENYLLFSIFFIFIYLIFfsfsAEKkfPKKNKFTEYIVKLILINFFFLTLSFFSYNYGVr-dIF----FRDDLSN 79  Naegleria gruberi
Q9ZD13         1 MLLLLPEITLTLIALLGQCFALMipnkNr--------IIYNIVILLCIISIFLTFKYSSYEG-IwhsFA----TERNIGI 67  Rickettsia prow...
CAB51628      10 ALASIPEIIVVTGACVLLIVGELvrkgRD---DLLLWASVAIVLLAAVATLMLAG-EMRPAYAG---MF----ISDRFAV 78  Sinorhizobium m...
AAC07305       3 WNAILPEAILAIGILTVFILELFlerkHY---KFLSVLAFIFVVLSGYSIFFVN--YPAKLFFD---GF----SVDALNL 70  Aquifex aeolicu...
WP_029400210   8 LIALLPLLIVGLTVVVVMLSIAW----RRN--HFLNATLSVIGLNAALVSLWFVGQAGAMDVTP---LM----RVDGFAM 74  Escherichia coli
WP_010880893  15 LKKFLPEFILLLLAFILFTLELFikgkER---RLVLNVVSYVGYFSVLMSLLIPWMYKGDTFYGn---F----TNDPLAV 84  Aquifex aeolicus
WP_010888131  10 LAPMLPVLLVLVGAIVSTLGGFWlp--rRT--LTALNILFVLASGASLVWLWGGAPWAAGMDVPr-sAFagalRADPAAL 84  Deinococcus rad...
WP_000904307  15 FESILPMLVLVCGGIFTLLINAFtsrfSRN-----LNVFLCMLFLVLDFLVVLGLEEQENAFf---gFL----SLDTLSL 82  Helicobacter py...
3RKO_N        75 LYTGLVLLASLATCTFAYPWLEGYNDNKDEFYLLVLIAALGGILLANANHLASLFLGIELISLPLFGLVGYAFRQKRSLE 154 Escherichia col...
AAF24782      87 FIKVILILSTIICFLIQQKYLIQQKINAYEINILMLISLLGLMLLVSTNHLITLYLAIELQSLSFYILTSTQKKSILSIE 166 potato late bli...
AAG17811      80 GIQLINIILVFLFFTCVPFLLNKYSLSSFEFTILILLCLLSLNLLVITVNLISFYLLLEFQSICFYILASYGKKNKYSFE 159 Naegleria gruberi
Q9ZD13        68 SKSIILLFTIVSLIIYRDYSILVGETLKFEFITLMLLSIVGIFVAISSRNFLLLFCGMELTALTSYALAGFKLNDIKSSE 147 Rickettsia prow...
CAB51628      79 FFKLVFYLATILTFFLSRKYAEIEGIGRSEYYVLLLFALVGMMIMASAIDLLSIYVGLELMVLCTYVLTGFLRKERRSNE 158 Sinorhizobium m...
AAC07305      71 IGKLFILAVTGFVLLSSYDYFSKKNSQYGELPYLYLIATLGLMVMISSDNLAIIFTGLELASITMYILVGLFRREYLSKE 150 Aquifex aeolicu...
WP_029400210  75 LYTGLVLLASLATCTFAYPWLEGYNDNKDEFYLLVLIAALGGILLANANHLASLFLGIELISLPLFGLVGYAFRQKRSLE 154 Escherichia coli
WP_010880893  85 TVKIFAVLITLAILPFASSYFSAKKSFYGEFYYILAFTLLGVFVLASTYNLIILYVALELVSVGFYILTALLRGSTEAKE 164 Aquifex aeolicus
WP_010888131  85 LLGGTVLLGALLTLLVSLDTAYRARVSFAEFDALLMYAVTGCLLIAFSGDLIVMLIGLEIMSLASYVLATLQ-DSRRSQE 163 Deinococcus rad...
WP_000904307  83 ISQSIVLISAFLLIFLALSKERFNEFQTAEFYSLYLFIVAGFQFMVSSNHLLLILIGLETASLPLCVLMALS-DKRYGLE 161 Helicobacter py...
3RKO_N       155 ASIKYTILSAAASSFLLFGMALVYAQSGDLSFVALGKNLGDG-MLNEP-L------LLAGFGLMIVGLGFKLSLVPFHLW 226 Escherichia col...
AAF24782     167 AGLKYFILGSIASGFILFGSSIIYAITGSLNFNNIFLILSNInFLENI-Nil--isLSYGLIFILVGILFKVGASPFHFW 243 potato late bli...
AAG17811     160 AGLKYFILGSFSSVLLLFGIALFYGFTGIFYYEDLNLFFLNL-SNIDS-NiylnsiFNFSIALMLVGLLFKLYSFPFHFW 237 Naegleria gruberi
Q9ZD13       148 GALKYFILGSLVSCLSLFGISFIYGFGGSIQFDDILHQLN----ND-S-Eik--pgLIIGIVLFLSSIFFKLASSPLHFW 219 Rickettsia prow...
CAB51628     159 AALKYVILGAVSTAIFLYGVSLIYGLTGTTQLD-RMAEAVSG-GPLDPa-------LLLAVVFIVAGLVFKIGAVPFHMW 229 Sinorhizobium m...
AAC07305     151 GAFKYLVIGTTGTSMYALGSALVYASSGSMVLSPVK--------EENTl-------FALGVILIISALALKVSAVPFHFW 215 Aquifex aeolicu...
WP_029400210 155 ASIKYTILSAAASSFLLFGMALVYAQSGDLSFVALGKNLGDG-MLNEP-L------LLAGFGLMIVGLGFKLSLVPFHLW 226 Escherichia coli
WP_010880893 165 GAFKYLILGGLSIALASYGAAFMYIYSGSLDLREILTYQG----KDIH-Y------LVLGLVFFLIGLAVKIGAVPFHYW 233 Aquifex aeolicus
WP_010888131 164 AGLKYFLLGSVGSAILIYGLAFLYGATGTLNYAGIAQQVSALdPQNIG-I------LVTGTLLVLSGFGVKIALVPFHQW 236 Deinococcus rad...
WP_000904307 162 AGIKYFTMGAMASAFFAMGAMAFYLLTGSLNLEVITLYLHTE-GITNPmL------FAMGAIFLIGAIGFKVSLVPFHTW 234 Helicobacter py...
3RKO_N       227 TPDVYQGAPAPVSTFLATASKIAIFGVVMRLFLYAPVGDSEAIRVVLAIIAFASIIFGNLMALSQTNIKRLLGYSSISHL 306 Escherichia col...
AAF24782     244 LPDVYEGAPNNISSFFAIVPKIAFIGILIRLFFEIFFNISYFFEIFFYIISFLSMLIGALSALQQKKIKRLLAYSSISHV 323 potato late bli...
AAG17811     238 VSDIYQGSTFVVTFFFALVPFLSIFYIFMKLYFYIYFFFYENFIIFLFFCSVGSMLIGSIGAIQQKKFRRLMAYSSITGT 317 Naegleria gruberi
Q9ZD13       220 IPDVYEGSPISSVTYFTAASKIGMVIVLLNISKLIIGNYYPINYNLIKIIAILSMLFGAFGAIRQTSLKRLMAYSTILNI 299 Rickettsia prow...
CAB51628     230 VPDVYEGAPTTITAFMSVAPKAAGFAVILRVFLNPLVEASNAW-IIVAAIAVATMALGSFVALVQDNFKRLLAYSSIAHA 308 Sinorhizobium m...
AAC07305     216 TPDAYEGAPTPTTAYLSTVPKIGMYFLFVKLTMYLFSAFP-DWKYVVMLLAVLSMFYGNIVAYAQKSVKRLLAYSSIAHA 294 Aquifex aeolicu...
WP_029400210 227 TPDVYQGAPAPVSTFLATASKIAIFGVVMRLFLYAPVGDSEAIRVVLAIIAFASIIFGNLMALSQTNIKRLLGYSSISHL 306 Escherichia coli
WP_010880893 234 VPDAYQGAPTPVTALMASVGKLAFFIPLVRVMPLVQEKFSLVWTITVGVIAALTMLYGNLVALVQKDVKRLLAYSSIAHS 313 Aquifex aeolicus
WP_010888131 237 TPDVYSGAPTLVSLFLSTVVKVAAFAGMLRVFGGALAAG-PGWHSVLQILVALTLVIGNAAALYQQNFKRLLAYSAVAHT 315 Deinococcus rad...
WP_000904307 235 MPDVYEGNNPVFASYISIVPKIAGFVVATRLFGAFIDTRTAWVEDIFYVLILMTITIPNFIALWQEDVKRMLAYSSISHS 314 Helicobacter py...
3RKO_N       307 GYLLVALIALQtgEMSMEAVGVYLAGYLFSSLGAFGVVSLMSs-pYRGPd----ADSLFSYRGLFWHRPILAAVMTVMML 381 Escherichia col...
AAF24782     324 GFILIGFTSNM--LNNIPFILLYVLIYIITSINLWTSYLSLN---INHKp----IKYLTDLSNIHTINKLIAIIIIINIF 394 potato late bli...
AAG17811     318 GYYLMVFLFPD--LALVKNVFFFIFVYIVNVLAIFVSFSNLSfirYKYN-----IERFSLLADLLKYNRLFAIMIVLFFF 390 Naegleria gruberi
Q9ZD13       300 GYVLIGVLLHN--QEGYKAALLYILIYAVVSIGFFTCLIMLF---GKDVd----NASFKTIEGIAETHKTIAALISIVMF 370 Rickettsia prow...
CAB51628     309 GFAIFGVVAGG--QDGIASVMLYLLIYTFMNLGIFGAVIMMRn---GDFs----GEVIEDYAGFAKFHPGLALLMLLYLF 379 Sinorhizobium m...
AAC07305     295 GYFLTALTAVD--KHLFSALLFYVFVYALATVGAFTVLAILEk---KEGw----THHFLDFKGLKEENPVLASMLALFLF 365 Aquifex aeolicu...
WP_029400210 307 GYLLVALIALQtgEMSMEAVGVYLAGYLFSSLGAFGVVSLMSs-pYRGPd----ADSLFSYRGLFWHRPILAAVMTVMML 381 Escherichia coli
WP_010880893 314 GYIMAGAAVAK--VIGMKAVIYFLVAYAVMSAGAFLVLALMEk---NPEw----QNYMENFYGLRFNAPYIAFAFFVYMV 384 Aquifex aeolicus
WP_010888131 316 GFLAMTLLGDT--AQGGAALGYYLLVYTLMTVGALAVVAALQr--T--Ee----GLTINDMRGLYYRHPAYAVALAFCLA 385 Deinococcus rad...
WP_000904307 315 GFALACVFIHT--EDSQQAMFVYWFMFAFTYIGAFGLLWLLKs--REKTwderyDHPYSKFNGLIKTHPLVAILGAIFVF 390 Helicobacter py...
3RKO_N       382 SLAGIPMTLGFIGKFYVLAVGVQAHLWWLVGAVVVGSAIGLYYYLRVAVSLYLHAP-EqpgRDAPSNWQYSAGGIVVLIS 460 Escherichia col...
AAF24782     395 SLAGIPPLAGFFSKLFIFFSAIKNNYFSLVFFGILISVLSSFYYLKIIKIIYFEKI-L---RKMYISKINKMQSIVLIIN 470 potato late bli...
AAG17811     391 GVAGLPPFPSFLAKLYLLFNLFNNGFYFFIFLIIVTTVLSFYYYLRISKVILYNKN-N---KWFFINNISYSSALLLMYI 466 Naegleria gruberi
Q9ZD13       371 SMIGIPPLTGFFGKYYLFYQAINKKEFTLAYCGIFTSVVAAFYYLKVVKAMYFSKK-I---AIIKLP----MQYGLLLIN 442 Rickettsia prow...
CAB51628     380 SLAGIPPTAGFFAKFYVLVALVERGFVALAVIAVLLSVVSAYFYIRIVMVIYMREp-E---RAFEPALTP-LVSATLAFT 454 Sinorhizobium m...
AAC07305     366 ALIGIPPAAVFLGKLGIFFGLVKTDMFALGILFAIASLISAGYYLKVIVYMFLYSg-E---VRHGQTTVSAGEAFTVLGT 441 Aquifex aeolicu...
WP_029400210 382 SLAGIPMTLGFIGKFYVLAVGVQAHLWWLVGAVVVGSAIGLYYYLRVAVSLYLHAP-EqpgRDAPSNWQYSAGGIVVLIS 460 Escherichia coli
WP_010880893 385 ALLGVPPTVGFVGKALVFMALSFDKLWWLAFIMILSAAISTGYYIRLVVVMYMHER-E---KEIRSAPSHLGEKFSLFAL 460 Aquifex aeolicus
WP_010888131 386 SLAGLPPFAGFFAKYLAIQVAFQAGYLLISVLAVLSSVAALVYYLRPAMLMFMPDRtP---AREYAHGQRPATNVAVALS 462 Deinococcus rad...
WP_000904307 391 GLAGIPPFSVFWGKFLAVESALESNHILLAVVMLVNSAVAAFYYFRWLVAMFFNKPlQ---SYAQNDIYTQNATMPIYAV 467 Helicobacter py...
3RKO_N       461 ALLVLVLGVWPQPLI 475 Escherichia coli BW2952
AAF24782     471 TQFILFLFIYPNIIL 485 potato late blight agent
AAG17811     467 LFFNILLILKPSLIL 481 Naegleria gruberi
Q9ZD13       443 YLVLGFLLFGSFIIL 457 Rickettsia prowazekii str. Madrid E
CAB51628     455 AAGTIGIGLFPAWFL 469 Sinorhizobium meliloti
AAC07305     442 AFLVIFFGLFPHVVL 456 Aquifex aeolicus VF5
WP_029400210 461 ALLVLVLGVWPQPLI 475 Escherichia coli
WP_010880893 461 TLASVLLGVLPSLVW 475 Aquifex aeolicus
WP_010888131 463 LIGIVVLGLLPNLWY 477 Deinococcus radiodurans
WP_000904307 468 IIAMALACLFSVFMM 482 Helicobacter pylori
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap