2W1T


Conserved Protein Domain Family
lp_hng_hel_AbrB
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TIGR01439: lp_hng_hel_AbrB 
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looped-hinge helix DNA binding domain, AbrB family
This DNA-binding domain family includes AbrB, a transition state regulator in Bacillus subtilis, whose DNA-binding domain structure in solution was determined by NMR. The domain binds DNA as a dimer in what is termed a looped-hinge helix fold. Some members of the family have two copies of the domain in tandem. The domain is found usually at the N-terminus of a small protein. This model excludes members of family TIGR02609. [Regulatory functions, DNA interactions]
Links
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Statistics
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PSSM-Id: 273625
Aligned: 23 rows
Threshold Bit Score: 31.8413
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
2W1T_B         8 RRIDDLGRVVIPKEIRRTLRIREGDPLEIFVDRDGEVILKKYS 50  Bacillus subtilis
CAC45645       3 TTVTIKGQVAIPKAVRELLGIKPGSKVDFRRTGSGIVEIRRAD 45  Sinorhizobium meliloti 1021
BAB53578       9 TTVSTKGQVILPSAIRKRREWGAGTRLVVEDTPEG-VLLKPAP 50  Mesorhizobium loti MAFF303099
AAD03923       5 VTITPNGRMSLPADIRKRLGLAGGGALLVEETEDG-VILRTVA 46  Novosphingobium aromaticivorans
P37554         8 RRIDDLGRVVIPKEIRRTLRIREGDPLEIFVDRDGEVILKKYS 50  Bacillus subtilis subsp. subtilis str. 168
P65028         3 TTIDVAGRLVIPKRIRERLGLRGNDQVEI-TERDGRIEIEPAP 44  Mycobacterium bovis AF2122/97
BAB67093       5 IRIGKRNAIYIPKEIADSLNLKEGDRLVLVVK-DDKIELIPVR 46  Sulfolobus tokodaii str. 7
CAC46196       4 STITSKGQITIPAKVRIDMGLSAGDRVDFIRMEDGHYAVVPAS 46  Sinorhizobium meliloti 1021
WP_010924016   7 KKVDDQRRIVIPKEWRAGFDTE--DLIMVLKD-DR-IEIYPKV 45  Sulfolobus solfataricus
WP_015626770   3 AVVDAAGRIVVPKPLREALGLQPGSTVEISRYGAG-LHLIPTG 44  Mycobacterium tuberculosis
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