Conserved Protein Domain Family
COG3378

?
COG3378: COG3378 
DNA primase, phage- or plasmid-associated [Mobilome: prophages, transposons]
Statistics
?
PSSM-Id: 442605
Aligned: 223 rows
Threshold Bit Score: 194.389
Created: 9-Feb-2022
Updated: 17-Oct-2022
Structure
?
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
WP_010922898  22 I--WNKe-KGIFEP--FEn-RLRKKA-RALLEYYtdlandELKPyvISKTIIDNVVDEIKDKT------LIPLPNE-PLR 87 
WP_003668222  54 F----DpkSRQWKNyaDS--VIEKSIkNEIVPHgi-----------wrTNLLASVSKLIALDSqei-veDNPFDQPaPYK 115
WP_014599374 169 knlteD----------QNr-----eVs---------------------RRKMDEVAYRLKThpdl-wrkFNDLNTD-TNL 210
WP_050899561 106 YqkEY----GTWKT--FHrnELQALVkNEVIKKLkevg------vswsYNDSRSTTEYVIGATyqpnirGNPFESAnPEL 173
WP_025315434 360 Y--IYK--DNVWQM--ISemDLKREL-VQLFRQ-------SNAH--YSEKGIKSTIDTMKLQIp-----LKNEPa--RNL 416
WP_052236727  43 eyynnnlainlttndiyyyqantwqpisdkvlmrtlaelfskagepfnpmrissAVESLRLSLp-----VMGSSq--KDL 115
WP_013184977 390 H--HYD--GIVWCP--VSnrDLQREM-VAAFME-------EKMP--YSPHGISAAVDALKLQLp-----MMNAPe--RHL 446
WP_111526105 307 Y--WYE--NGYYKR--TDknTVKAKI-SAYIPDgi-----------anDNLLNNVYNLMLADVdhm-anEKDFNTN-EKY 366
WP_111526113 306 Y--WYE--NGYYKR--TDknTVKAKI-SAYIPDgi-----------anDNLLNNVYNLMLADVdhm-arEEDFNNE-ENY 365
WP_125125315 183 H--YYN--GVVWVP--LPdkELQRDM-AQIFIE-------ADVA--YSQNAIKSAVETMKLSLp-----VMGVTa--RNL 239
WP_010922898  88 VAFPNCTLEWKIShgryvpsfVLAeERTPEHFAFHYIPHK-------------I-------HLEElvkineevlsardip 147
WP_003668222 116 AVFGKHTYNLMTD--------TLE-DNSPENYLLQNRPYE-------------L-------ETKG--------------- 151
WP_014599374 211 INFRDGVLNLRER--------RML-PHDPKYCFTSFIDADckvipqqntnnrdY----------Sy-------------- 257
WP_050899561 174 VAFKNGTYNINSG--------KLQ-DNSPDNMLVNAHDYE-------------L-------NISG--------------- 209
WP_025315434 417 IGFKNGVFDLDTR--------TFK-SHSKNHWLQSINNVN-------------FidsvsneNLEH--------------- 459
WP_052236727 116 ICFKNGVYDLKTQ--------TFR-PHNKQDWLLVSNDID-------------YypakereSFET--------------- 158
WP_013184977 447 IGFRNGVFDLKIG--------QFR-PHHKHDWLLLANDVE-------------FnspvsgeTLHS--------------- 489
WP_111526105 367 INFKNGLYNIDTK--------ALE-PHNADILYTRQVNTE-------------Y-------IEGS--------------- 402
WP_111526113 366 INFKNGLYNLTTR--------KLE-PHNEHILYTRQINTD-------------Y-------IEGA--------------- 401
WP_125125315 240 IGFSNGVFDTRAG--------LFR-KHKKDDWLLIASELP-------------FsppaegeTLAS--------------- 282
WP_010922898 148 idliedlarrL----CPKSLEVFKQ-WAN-------------E-----KWVTLFEIIGYTLFP-K-I-EFRKAFMILGP- 200
WP_003668222 152 ----------K----ATTWNKWLKQsLVPstkeirddtgklqDeydltAIETVKAFIGFALAG-S-FkDFQIYMILYGL- 214
WP_014599374 258 ---------------SSVFECFLTD-CTEgd----------kA-----KQASLQQMVGYIISN-H-F-NAKKMFVLIGE- 302
WP_050899561 210 ----------Kp---TPATNKLLEG-MITe------------P-----AVNLFKQFVGYMFYH-ShA-PMQDAIFLHGN- 255
WP_025315434 460 ----------H----APNFYQWLSR-SAKkd----------tI-----KMDAIKAALYMILAN-R-Y-DWQLFLEVTGA- 505
WP_052236727 159 ----------H----APNFAKWLNK-ASDn-----------qD-----KAKNILAALYMILAN-R-Y-DWQLFLEVTGA- 203
WP_013184977 490 ----------H----APQFWHWLNR-ATAhc----------eN-----KAERVLAALFMVLAN-R-Y-DWQLFLEVTGA- 535
WP_111526105 403 ----------Tit-eYHIFTKYVRD-LCMmaag-----gidwQ-----AYKALQEIIGLAISNiYgH-KTKKAVFLYSPv 459
WP_111526113 402 ----------SmadiTSTFTRFIGD-LCKgvdg-----aidwQ-----KYKALQEIIGLAISNvHgH-RTKKAAILYSPi 459
WP_125125315 283 ----------H----APNFWRWLRR-SVAdn----------dR-----KADRVLAALFLVLAN-R-Y-DWQLFLEVTGP- 328
WP_010922898 201 RGTGKSTFINLIK-KLLGRGNVVNIPLHILF-GDknR---FVLAELYHKLVNAVSETK-EYNldDMDTLKVLTGGDRITA 274
WP_003668222 215 GGDGKSTFLNKLM-ELIGKPNVSNVSLEALS-DQ--KeakFATSQLYHKAANVFADIS-PKFmeQTNIIKTLTGGDATTA 289
WP_014599374 303 PHTGKSVWLSLLQ-ILIGKEHTTSMTLKQLG-VN--R---FMQTRLAHSKLNISPEMSdDGDlkGVEFIKAVTGGDLITG 375
WP_050899561 256 GGEGKSTLLNYISkEVLGIDNVSAVKPQDLTgEN--R---FKLIQLYLKEANIVPDIK-KGYlqNTDVLKTLTGGDTMDA 329
WP_025315434 506 GGSGKSVFADIAT-MLAGKNNTVSANMEAL--EK--P---RERSLIVGQSLIILPDq--AKYigEGNGIKAITGGDDVAI 575
WP_052236727 204 GGSGKSVFAEIAT-MLSGKNNTVIGTMESL--EK--A---RDRALVVGYSLIILPDq--PRYmgSGAGLKAITGGDEVAI 273
WP_013184977 536 GGSGKSIFAEICM-MLAGKGNTVSASMAAL--EN--P---RERALIVGYSLIILPDq--TRYvgDGSGIKAITGGDEVAI 605
WP_111526105 460 GNTGKSQFLGLLG-HLIGQENITAIPLQNMN-EDkgR---FAFANAGLVRLIMNGDQS-KADikDSSIFKSVTGGDAIKV 533
WP_111526113 460 GNTGKSQFLSLIS-NLVGPEHITTIPLQNMN-EDkgR---FAFANAGLIRLIMNGDQG-KATikDSSIFKQVTGGDYIKT 533
WP_125125315 329 GGSGKSVMAEICT-MLAGKANTVSASMRAL--ED--P---RDRALVVGYSLIIMPDm--TRYagDGAGIKAITGGDKVSI 398
WP_010922898 275 DVKFKDPITFTPYAKLVIASNKPPTI--RDKNdMAFWHRWLIIEF---PNQFED-NTa----WGD-KTfteDELEGILTV 343
WP_003668222 290 QFKYKDPFKLENEAKLIFSANDLPAF--NDFT-DGFKRRPIIVTF---H-KIKHfKEq----FKEqDFk--REMPAFAYE 356
WP_014599374 376 DRKGEAAIDFYGRTKLVAAGNHMPKLakHDGT-TAFIDRLLFITF---NNSIPE-RQrd-rfLLQ-KLl--EERDIIIKW 446
WP_050899561 330 EEKGVQGINFTSYAKLLFSANDLPTF--SDNS-TGFKDRLMVIDLvngDTRKPD-NHfwdsqDMD-KVr--EERSSFVFD 402
WP_025315434 576 DEKYKKPYSTKIQGVILAINNNPMTF--SNDD-GGISRRRVIFHF---GEPVPA-NErd-piLKD-KIr--GELSVIIRH 644
WP_052236727 274 DPKHKQPYSCKIPAVVLVINNEAMRF--NDRN-GGISRRRVIFHF---SKVIPE-KErd-lqLVS-KIr--QELPSIVRL 342
WP_013184977 606 DPKHKQPYSTRIPAVVLAVNNNAMSF--SDRS-GGVSRRRVIFNF---SEVVPE-NErd-plLRD-KIa--AELPVIIRQ 674
WP_111526105 534 EAKGKDIKALVFKGLVLIACNDLPYIa-DDKG-EHIYRRMYIVPC---THTIEE-KErd-pnILD-KMl--EELPAIVNW 603
WP_111526113 534 EGKGKDIKALVFKGFIIIACNDLPYFa-DDKG-DHVYRRMYIVPC---THEVPE-KErd-asILN-KMl--EELPAIVNW 603
WP_125125315 399 DPKHKAPYSTRIPAVVLAVNNNAMTF--SDRS-GGISRRRVIFNF---SEVVPE-NErd-plLAE-KIe--GELAVVIRH 467
WP_010922898 344 SILAFSRVLLHG-KFDFEQTEEEVRGIWLSTIDYVYKFVKEKLkhgeimiTKNAD---D-----------YVRVKELYRM 408
WP_003668222 357 CLKSYKKALDSG-KFPVTEYMEQQKRSWVNANDNIGNWINDCC-------TTNEN---D-----------KEKSVYLYGN 414
WP_014599374 447 ALEGLYQLIDNNfIFTECNEAIQFKKKYMAELDNVTEFVNDMC-------VVEPEndkS-----------RVHRTRLYDA 508
WP_050899561 403 CLTRFKEALDKH-RFDKPRSVIEATEAWHKDNDHFGEFLDEWCe-----iDLTSG---K-----------GEKASYVVSA 462
WP_025315434 645 LFNYFEDDNKAK-LLLIEQQKSSEAIEVKRLTNPLIDFCSYLF-------ATDKP---Dgmmig-kystpVQFKRFLYHA 712
WP_052236727 343 LLNEFANPNDAK-EKLHKQQQSEEAMIIKRESDHLVDFCSYLN-------ALDNP---NgmlignlgihpFSPKKYLYHA 411
WP_013184977 675 LLHRFADPQTAR-RLLAEQQKSEEALDIKRGTDPLVDFCGYLV-------ASHET---DgllignaeivpFNPRKYLYHA 743
WP_111526105 604 AIEGLHRLKANNyNFTEIAAGNQYIEDYRKNSDTVYSFLMDEGyt----iTKDPN---D-----------KISKKRLLEQ 665
WP_111526113 604 AIEGLHRLRENNyNFSEVAAGQEVIANYRKNSDTVYSFLMDEGyi----iTKNPA---D-----------KVSKKELLTA 665
WP_125125315 468 LLTRFADQSVAK-QMLHEQQKSEEALAIKREGDSLVDFCGYLM-------ASVVC---DgmfignaeivpFSPRRYLYHA 536
WP_010922898 409 YLEYCSTNGY-N-ATTYKGFVRRLRDYfnl----tvvM-KNV----EGK--------RfRAV--VGIKIN 457
WP_003668222 415 YKEYCKNTAV-P-CLSNRKFAKELIARgykh---ttvKi-------NGK--------NvKGY--KGIALK 462
WP_014599374 509 YIIYCKANGL-T-SVKKTEFWREIEKF----------RvRSGkirvEGStp-------lMGY--RGIRLL 557
WP_050899561 463 YKEFCQMNNY-SdKTTAQTITSNLAKLgvk-------kdKST----KGWnnsdyqawR---F--IGLRLL 515
WP_025315434 713 YITFIENNNLkN-PLSLRNFVNALPAAmkeygleviiraRHG----EGR--------R------TNLHLD 763
WP_052236727 412 YVEYIRNIGLsN-HLTLTQFGKSLNYAmnengk-qymkkRFS----VGV--------K------TNLELN 461
WP_013184977 744 YLAYMKGNNLnK-PVSVTRFGMDMPGAlaeynq-hylrkKSK----QGI--------R------SNLDLN 793
WP_111526105 666 YNQYCIREER-Q-SVSKRQFGERLEKItgf----ktvRtRTA---------------NiRDYyiQGIKEY 714
WP_111526113 666 YNAYCLDNGR-Q-VVGVRQFSERLKKLtgl----eitRvRVD---------------KyRDYyaQGIKEE 714
WP_125125315 537 YLAYMRANGLnK-PVSLMRFGTDMPGAmaeygk-eyqkrKTK----QGI--------R------SNVTLH 586
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap