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COG2885: OmpA 
Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane]
Statistics
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PSSM-Id: 225439
View PSSM: COG2885
Aligned: 99 rows
Threshold Bit Score: 76.0409
Threshold Setting Gi: 13470601
Created: 7-Oct-2002
Updated: 16-Jan-2013
Structure
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Aligned Rows:
COG2885 is classified as a model that may span more than one domain.
COG2885 is not assigned to any domain superfamily.
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586110   173 TVSYTYRGEVqrgsrryHHITAAYSMSYESPKRTHGVQRNakegmypvrTTGVSKQNLYWDNELGNIAEYDDEFRILLYL 252
gi 15889177 553 fyapelmddpdrdyvyrdpGLDLPPMRLRIPVTDYIIDTS------------SDPDRDYYRFLEQPPVEPVERVYSLDEV 620
gi 15594512 155 KDFVVKFNVNyeykgkeEHNGKHYHIILSNYESQYNVKNIsfyqkvdqkIYFDNEIGNTYKYSDKYIFEINQNNNQHFKM 234
gi 15598722  57 RAGEQATFRLkpeaqwlGRGSATLLAAAPPWRPGQGDINLgqvsigsgeVPFNSSQQQAGRLLTGLLEGRSPLVRHRTWQ 136
gi 15965621 470 yvmmyapeyeedrptivdvGYDLPPMRLSIPVDEYIVDVA------------EDPDRDYYEFLSEPPVEPVERVYTIDEV 537
gi 15639612 295 aaqilarpenlrllaegnviilCDEAALRVHVPYP---------------LVDEHFYFAYHDVKRFLTDERS-------- 351
gi 17230523 393 wqsylslepqlmikrvnkllqppptaslridhngvlyavgsaprqwilatrkswsvipgltqfQDQDLVESELN------ 466
gi 13472828 778 vvkrlqasltppksvllsiiQGRIVVVGEAPANWIN----------------RARAAAEQLSADGVVLDVSQLQELNLAE 841
gi 13470601   1 -------------------------------------------------------------MKLRPNERVTIREFK---- 15
gi 13472197 551 vlsyvdERDYqdegdwrDPGDDLPPMRLTIPRRDYILDSEd----------VQSPD-DYYTFLDQPPVERVQRLYSIDEV 619
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586110   253 SGGTVLRYQGTataknfaperfdpartvvelqetlkdlhmpdakvreteEGVTISIENVQFDADSASLAP--SEYEKLRK 330
gi 15889177 621 RYSARIRDKVR--------------------------------------RIDLDTITFATGSADIPMAQAr-SLRKVADA 661
gi 15594512 235 IGNSLGRIVSIelpndnlieteveny---------irekkikaieveknNKGINLSFDIEFYPNSFQILQ--KEYKKIDL 303
gi 15598722 137 GDRLEVRLLPArfasvysqyq-------------------aciakllpvNFDQVKLAQVGFPDGGTALND--VARAKLDI 195
gi 15965621 538 RHSARLRDKVR--------------------------------------RIDLDTITFATGSAEVSMSQAk-TMRNVAEA 578
gi 15639612 352 -PGVGVRSGIN---------------------------------------TLKITVYDVRFVANSPEILA--SEKDRVDV 389
gi 17230523 467 ELAIYQSQIERe-------------------------------------IIFFPEGSQEIIPSELSKLNNlvLAIKKLLP 509
gi 13472828 842 LNDLREAIQAT--------------------------------------DIFFYSGKVVPGPEQTPVLDR---LADQIKE 880
gi 13470601  16 -RRPDLRRMAR---------------------------------------SIDIQSINFGFGLAAISSSQydKIENIADA 55
gi 13472197 620 KRSARVRDIAR--------------------------------------RVDLDTLNFEFGSSSISDTEVq-KLEGVASA 660
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586110   331 IAELLRAFP-DRELLVSGHAARRGSVQDQQRISEERADVVARYLQELGVVDAaHVYTRGCGAQQSIAPNDSED---GRRK 406
gi 15889177 662 INKALQKNP-AETFLIEGHTDAVGSDESNLVLSDERAASVANVLTDVYGIPPeNLATQGYGERYLKVQTLGPEqqnRRVT 740
gi 15594512 304 IAKLLEKFK-KNNILIEGHTEQFGLEEEMHELSEKRARAIGNYLIKMKVKDKdQILFKGWGSQKPKYPKSSPL----KAK 378
gi 15598722 196 ILQLLKADPsINRIELDGHSDNSGNRLTNRDLSRRRALAVQEYLKSNGVPES-QINVRFYGERYPLVANNSAA---NRAR 271
gi 15965621 579 MNKVLEKDP-GETFFIEGHTDAVGADQSNLVLSDERAESVAVLLTEVYGIPAeNLVTQGYGERFLKIRTDGPEqenRRVT 657
gi 15639612 390 IATALKKMGpYTRFLIEGHTADLHRPQEEAALSVARAQRMAQELSRRGIEMT-RITTAGHGATKPIAPSDTHA---NKAK 465
gi 17230523 510 IAKYLEK---DVHIQIIGHTNTTGTESRNAQLSAGRSQRVLSYLSSQGISTS-QLQVLGVSSSQPLQPELTDE---GKKF 582
gi 13472828 881 FAENARKSGvTARFMLTGHSDATGRETANASISAARAETVRALLNKRGVAPE-LLLVRGAGTFEPLVPENSQT---GSST 956
gi 13470601  56 LQRILRRDP-GARADRRTHRRSRLLPVEP-GPVRTTGPSLKGTLVREFGVPGyALETVGCGEEFLLMPTQNEN---WQ-- 128
gi 13472197 661 MEKLLKKNP-AETFLIEGHTDAVGTPEANLALSDRRAEAVAEALTNAFGIPPeNLTTQGYGEQYLKVNTQAPNrenRRVA 739
                       250
                ....*....|.
gi 586110   407 NRRVEITIISK 417
gi 15889177 741 IRRVTPLVKPI 751
gi 15594512 379 NRRVEITILNN 389
gi 15598722 272 NRRVTVHLSRE 282
gi 15965621 658 IRRVTPLVRPV 668
gi 15639612 466 NRRVEITILRD 476
gi 17230523 583 NRRVSFKVIIM 593
gi 13472828 957 NRRVSITVNLD 967
gi 13470601 129 NRRVTLRRFDY 139
gi 13472197 740 IRRITSLVAPV 750
Citing CDD
Marchler-Bauer A et al. (2013), "CDD: conserved domains and protein three-dimensional structure.", Nucleic Acids Res. 41(D1):D384-52.
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