NCBI CDD Logo
Entrez CDD Structure Protein Help
?
COG0826: COG0826 
Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Statistics
?
PSSM-Id: 223896
View PSSM: COG0826
Aligned: 75 rows
Threshold Bit Score: 120.097
Threshold Setting Gi: 20094342
Created: 7-Oct-2002
Updated: 16-Jan-2013
Structure
?
Aligned Rows:

COG0826 is classified as a model that may span more than one domain.
COG0826 is not assigned to any domain superfamily.
Sequence Alignment?
Format: Row Display: Color Bits: Type Selection:
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17229233  10 QSSFPRPDILAPAGNWECAKAAIENG---ADAIYFGLD-RFNARMRA-QNFTEAD---LPELMAFLHLRGVKGYVTVNTL 81
gi 15669853   5 SHPGDFESLKIIVNEINKLRKINKKLkkeSFEVYVG-FpEFVGTGRAtLYKPNFEd--LAKQVNYAKKHNVRFEVVINAS 81
gi 20093459   1 --MFSVPSPGDPALTDRLLRSLPTDR---IETVYFGLP--IAGTGRAtPVQVDTDt--ATELAEVCHSYSVEPEAVINPL 71
gi 20094340   6 PHPGHTSGLEALLSGIDDLGRV-EA-------VYTGGSpDEVGTGRPnLHYPRLDe--VREQVELAHSHDVLYDVVINST 75
gi 15599107   2 KLSLGPLLFYWDKRQIFDFYAEMAGQp--LDVIYLGET--VCAKRRA---LSLND---WQALARELAQATRAELVLSGLA 71
gi 17549190   4 HISLGPLLYYWPRQHTLDFYAKVADSp--VDIVYVGET--VCSRRHE---LRTDD---WLALAAMLRDAGK-SVVLSTRT 72
gi 15898557   2 KLVVATNFDDSLLEGLKRYPDV--KY------IFGSFKrTITGHGRAgFIVPHIKeeqFETHISLAHSYGIKFLYTMNTN 73
gi 15898807   2 KLVVATNFDDSLLEELKKYPEV--KY------IFGSFKrTITGHGRAgFIIPDIKeeqFKNHISIAHSYGIKFLYTMNTN 73
gi 15640671  31 KYALGPLLYFWPKQDVESFYTQAAASm--ADVIYLGET--VCSKRRE---MKPQH---WFEIAKSLSAAGK-QVVLSTMA 99
gi 16123626   2 KYALGAVLYYWPKTEIETFYHAAANSs--ADIIYLGEN--VCTKRRE---MKVGD---WLALAKAVASSGK-QVVISTLA 70
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17229233  82 IFPQELGe------AQQYLRTIIAAGVDAVIVQDVGICRLIRHLSPDFPIHASTQMTITSPAGVEFAKSLG-CELVVLAR 154
gi 15669853  82 CIGGMHLtpkgisyINWIFSQLKNIGVDSVALSDPYLVDLAKNNG--LEVNVSCIALVDSLDKALFWDEKEvYAITLDSS 159
gi 20093459  72 CTADVVCsrnafaeFERTLDDLDDAGIERLVLSDPLMIHAAVERG--FRVSVSCVVEVNTPERARYFDEIGvEEITLDTN 149
gi 20094340  76 CPLRGEPtrrvaerYSNYLEELEKAGVDGVVVADPFVLKLAAEVF--DRITVSCLAFVNTPEKAEFYAD-VaTAITVDTS 152
gi 15599107  72 LIEAASE--------LSSLRRLCENGELRVEANDMAAVYYLSQRG--VPFVGGPALNLYNGHALAELYSWG-MRRWIPPV 140
gi 17549190  73 LIETSAEa--------QALRRQCQQDDWPVEAGELGAVRLLR--G--RPFVAGPHCNAYHGGTLAWLAGLG-AMRAVMPL 139
gi 15898557  74 TLLGKEYdtefigkVMKEVDKLVNFGVDGFIVALPFLIRLIRTEYPDLEVSASSFSRIRNVREVEEYTNLGvNTIIMHED 153
gi 15898807  74 TLLGKEYdaefigkVMKEIDKLVSLGVDGFIIAVPFLIRLIRSEYPDLEVSASSFSRIHNVREVEEYANLGvNTIIMHED 153
gi 15640671 100 LLEAPSE--------INVMKKYIDNGDFAIEANDVSAIQMAHEKG--LPFIVGPAVNTYNAHTLKLFLKQG-MIRWCMPV 168
gi 16123626  71 LLQAPSE--------LNELKRYVENGEFLLEANDLGAVNMAAERG--LPFVAGHALNCYNAYTLRILHRQG-MIRWCMPV 139
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17229233 155 ECSLAEINKIQQQIAq--rAasLPLEVFVHGALCVAYSGQCLTSEALGGRSANRGECAQACRMPY--ELTVDGEITDLGe 230
gi 15669853 160 INRHFDIIQEIRENv------sCKLKILVNEACLYKCPMRIQHFNFFSHANAQN--IPALDDYYY---NKCINLRIKK-- 226
gi 20093459 150 VNRRLDTIEAIASEVs------ARLRIIVNEGCLPDCPYRASHFCLFSHATRPGEEVAEDPYFVR-----CISERVNN-- 216
gi 20094340 153 FNRRFEVLEELSRl-------qVELKVIVNEGCLLDCPYRPFHFNIFSHLYGPDE-VSVYDDYYY---RRCIADRLEH-- 219
gi 15599107 141 EVSGKLLRGVLDQAAqlglEq-LQTEVFAYGHLPLAYSARCFTARAENRPKDDCQFCCQQYPEGIplLSQEGEALFTLN- 218
gi 17549190 140 EMSQATLAELMREKP----Da-LEIEAMVWGRLPLAFSARCFTARHFRLNKDDCGFRCIEHPDGLavRTREGQEFLAIN- 213
gi 15898557 154 ANRDFKLLKEVAALSr---AnrFEIELILNNSCLYGCPFRLTHDNISSVTSMVNGVNDVWFEYPV---LLCATDVLND-- 225
gi 15898807 154 ANRDFKLLKEIASLSk---TnkFDVELILNNSCLYGCPFRLTHDGISSITSMVNGVNDVWFEYPI---LLCATDVLND-- 225
gi 15640671 169 ELSRDWLINTLQQCDelniRgqFEVEVFSHGYLPLAYSARCFTARAENRAKDECETCCIRYPTGIqvASQEGQSVFNLN- 247
gi 16123626 140 ELSRDWLSNVLQQCDalgfRhqFEVEVLSYGHLPLAYSARCFTARSEDRAKDECETCCIKYPQGRkvMSQEDQQVFILN- 218
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17229233 231 RKYLLSPQDLAGLEILPDLVKSGVTSLKIEGRLKAPEYVANVTRVYRQALDRVIGHSQRDhvsHQERYDLEMAFSRglyt 310
gi 15669853 227 -KELIIKSPFIRPEDLKYYKGL-VDIFKISGRSHPIGWIKRVINAYLNERWDGNLMELLDcp------------------ 286
gi 20093459 217 -PTLIIKSPFVRPEDLSVYMDLGVRAFKIAGRANSITWIRRAVRAYLRGRYDGNLLDILD-------------CP----- 277
gi 20094340 220 -PELIIKSPWIRPEDLGHYLEY-VDAFKISGRSHQVEWIVEVVNAYLEGRWDGNLLHILDcp------------------ 279
gi 15599107 219 GIQTMSGKVSNLLADYRSLEHSgADLLRLSPRAQGMAEVIAAFD-------RVRKGAAP-------PLAVE-GCNG---- 279
gi 17549190 214 GIQTQSGQCLDILDQAPALSALGVKVLRVSPQSTGTLEAVAALDALRRGLPAVEVHPP-------EG---IGRCNG---- 279
gi 15898557 226 -PANLIRSRWIRPEDIKYYEEIGINRFKIAGRNKKTDWILRVVKAYAERKYEGDLLDLVSypqGRAATKAVQMVNGp--s 302
gi 15898807 226 -PVNLIRSRWIRPEDIKYYEEIGINRFKIAGRNKKTEWILNVVKAFTERMYEGDLLDLVSypqGRAATKAIQMVNGp--s 302
gi 15640671 248 GIQTQSGYCYNLVNDLPSMAGl-VDVVRLSPLGVETFQHLEQFK-------ANEQGLKPQ------PITSH-QCNG---- 308
gi 16123626 219 GIQTQSGYCYNLGNDLISMQGl-VDIIRLSPQGLETLSVIDQFR-------ANEQGLSPL------PVANKADCNG---- 280
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17229233 311 GWfqGINNQELVHARFGKKRgvYLGevsrirheeVtiKLEApVKPGDGVVFDCGhpeAKEeGGRVYGVVQkgkeavlsFG 390
gi 15669853 287 ---rELEHFYYLDNRALD-G--AIEyw------kS--CNKL-CSKCNFCKELAEk--ALK-VKY---------------- 332
gi 20093459 278 -T--VLRHLYHVDNRELDGF--LKR---------VgrCDRR-CSKCGFCAELAEr--AVE-PLGGLEDAE--------VE 331
gi 20094340 280 ---rELRDVFYVPNPELD-G--AIErw------kE--CDFR-CHECGFCRELADr--VVE-VREFKSTVV--------GE 333
gi 15599107 280 YW--HGRPGMLRAEEAGLC------------------------------------------------------------- 296
gi 17549190 280 YW--HGQSGIEWLETSR--------------------------------------------------------------- 294
gi 15898557 303 SY--FILTSVRIDNTKFPKG--WIKff------fTndCDTRsCKECKYCDIVAEr--VMT-VNGEPFKSS--------EW 361
gi 15898807 303 SY--SVLTKVKIDNTKFPED--GIKff------lTndCDTRsCKECKYCDIIAEr--VIT-IDGEPFKTD--------KW 361
gi 15640671 309 YW--HQLAGLAVKNS----------------------------------------------------------------- 321
gi 16123626 281 YW--HRVAGLELVS------------------------------------------------------------------ 292

                ...
gi 17229233 391 QGN 393
gi 15669853     ---
gi 20093459 332 PAR 334
gi 20094340 334 VSA 336
gi 15599107     ---
gi 17549190     ---
gi 15898557 362 SIR 364
gi 15898807 362 NIR 364
gi 15640671     ---
gi 16123626     ---
Citing CDD
Marchler-Bauer A et al. (2013), "CDD: conserved domains and protein three-dimensional structure.", Nucleic Acids Res. 41(D1):D384-52.
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap