1QAN


Conserved Protein Domain Family
RsmA

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COG0030: RsmA 
Click on image for an interactive view with Cn3D
16S rRNA A1518 and A1519 N6-dimethyltransferase RsmA/KsgA/DIM1 (may also have DNA glycosylase/AP lyase activity) [Translation, ribosomal structure and biogenesis]
linked to 3D-structure
Statistics
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PSSM-Id: 223109
Aligned: 75 rows
Threshold Bit Score: 139.663
Created: 7-Oct-2002
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1QAN_A     1 MNEK---NIKHSQNFITSKHN---IDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVD 74  Bacillus subtilis
15612943  12 KLSRgepPNFSGQHLMHNKKL---LQEIVDQAKVSKKDTVLELGAGKGALTTFLSERAKRVLAVEYDQTFIQVLNRKMAH 88  Bacillus halodurans
2500512    3 SFYP---SRKLGQNFTVDQSV---IAKTCRLIKSLNPTALIEVGPGKGALTKALLKLQLPYHGIELDKRLAEYLLVNEI- 75  Mycoplasma pneumoniae
15841466   1 -MSA---LGRSRRAWGWHRLHdewAARVVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPRRVGVLRERF-P 75  Mycobacterium tuber...
15609125   1 -MSA---LGRSRRAWGWHRLHdewAARVVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPRRVGVLRERF-P 75  Mycobacterium tuber...
127191     1 MNQK---NPKDTQNFITSKKH---VKEILNHTNISKQDNVIEIGSGKGHFTKELVKMSRSVTAIEIDGGLCQVTKEAVNP 74 
127191     1 MNQK---NPKDTQNFITSKKH---VKEILNHTNISKQDNVIEIGSGKGHFTKELVKMSRSVTAIEIDGGLCQVTKEAVNP 74 
127191     1 MNQK---NPKDTQNFITSKKH---VKEILNHTNISKQDNVIEIGSGKGHFTKELVKMSRSVTAIEIDGGLCQVTKEAVNP 74 
127191     1 MNQK---NPKDTQNFITSKKH---VKEILNHTNISKQDNVIEIGSGKGHFTKELVKMSRSVTAIEIDGGLCQVTKEAVNP 74 
127191     1 MNQK---NPKDTQNFITSKKH---VKEILNHTNISKQDNVIEIGSGKGHFTKELVKMSRSVTAIEIDGGLCQVTKEAVNP 74 
1QAN_A    75 HDNFQVLNKDILQFKFPKN---QSYKIFGNIPYNISTDIIRKIVFDS-------IADEIYLIVEYGFAKRLLNTKRSLAL 144 Bacillus subtilis
15612943  89 AANTTIIHEDIMRIHLPK----GEFVVVSNIPYSITTPIMKKLLSNPvsgfqrgVIVMEKGAAKRFTSPFIKN---AYVL 161 Bacillus halodurans
2500512   76 LTEEQLTIGDALKQNLDQYfpdTIPLLCGNIPYSISSPLIANFLASKlq---qfVLVCQWEFGQRLVAPVNSPNYSAFGV 152 Mycoplasma pneumoniae
15841466  76 G--ITVVHADAASIRLPG----RPFRVVANPPYGISSRLLR---TL--------LAPNSGLVAADLVLQRALVCKFAS-- 136 Mycobacterium tuber...
15609125  76 G--ITVVHADAASIRLPG----RPFRVVANPPYGISSRLLR---TL--------LAPNSGLVAADLVLQRALVCKFAS-- 136 Mycobacterium tuber...
127191    75 SENIKVIQTDILKFSFPKH---INYKIYGNIPYNISTDIVKRITFES-------QAKYSYLIVEKGFAKRLQNLQRALGL 144
127191    75 SENIKVIQTDILKFSFPKH---INYKIYGNIPYNISTDIVKRITFES-------QAKYSYLIVEKGFAKRLQNLQRALGL 144
127191    75 SENIKVIQTDILKFSFPKH---INYKIYGNIPYNISTDIVKRITFES-------QAKYSYLIVEKGFAKRLQNLQRALGL 144
127191    75 SENIKVIQTDILKFSFPKH---INYKIYGNIPYNISTDIVKRITFES-------QAKYSYLIVEKGFAKRLQNLQRALGL 144
127191    75 SENIKVIQTDILKFSFPKH---INYKIYGNIPYNISTDIVKRITFES-------QAKYSYLIVEKGFAKRLQNLQRALGL 144
1QAN_A   145 FLMAEVDISILSMVPREYFHPKPKVNSSLIRLNRKKSRIS-HKDKQKYNYFVMKWVNKEYKKIFTKNQFN-------NSL 216 Bacillus subtilis
15612943 162 AWRMWFDLEYVKGISRECFSPPPKVDSAMVFISRKPDPIVpYKDRSAFFGLAEYALREPKAPADSLLRGIftatqlkHVK 241 Bacillus halodurans
2500512  153 FCQYHLQIKSVFKIDKVAFKPKPQVDSVLMLLKKKPQVAY----EAHFGRFLKQCFHQRRKLLVNNLKQLlpptlltNVL 228 Mycoplasma pneumoniae
15841466 137 RNARRFTLTVGLMLPRRAFLPPPHVDSAVLVVRRRK-----CGDWQGR-------------------------------- 179 Mycobacterium tuber...
15609125 137 RNARRFTLTVGLMLPRRAFLPPPHVDSAVLVVRRRK-----CGDWQGR-------------------------------- 179 Mycobacterium tuber...
127191   145 LLMVEMDIKMLKKVPPLYFHPKPSVDSVLIVLERHQPLIS-KKDYKKYRSFVYKWVNREYRVLFTKNQFR-------QAL 216
127191   145 LLMVEMDIKMLKKVPPLYFHPKPSVDSVLIVLERHQPLIS-KKDYKKYRSFVYKWVNREYRVLFTKNQFR-------QAL 216
127191   145 LLMVEMDIKMLKKVPPLYFHPKPSVDSVLIVLERHQPLIS-KKDYKKYRSFVYKWVNREYRVLFTKNQFR-------QAL 216
127191   145 LLMVEMDIKMLKKVPPLYFHPKPSVDSVLIVLERHQPLIS-KKDYKKYRSFVYKWVNREYRVLFTKNQFR-------QAL 216
127191   145 LLMVEMDIKMLKKVPPLYFHPKPSVDSVLIVLERHQPLIS-KKDYKKYRSFVYKWVNREYRVLFTKNQFR-------QAL 216
1QAN_A   217 KHAGID-------DLNNISFEQFLSLFNSYKLFNK 244 Bacillus subtilis
15612943 242 RNAGIKhdvsigaLSERQWGVIFETMTQYVRRPLW 276 Bacillus halodurans
2500512  229 QQQDLAat----vRAQELTPTQLFRLYLSLKPHLS 259 Mycoplasma pneumoniae
15841466     -----------------------------------     Mycobacterium tuberculosis CDC1551
15609125     -----------------------------------     Mycobacterium tuberculosis H37Rv
127191   217 KHANVT-------NINKLSKEQFLSIFNSYKLFH- 243
127191   217 KHANVT-------NINKLSKEQFLSIFNSYKLFH- 243
127191   217 KHANVT-------NINKLSKEQFLSIFNSYKLFH- 243
127191   217 KHANVT-------NINKLSKEQFLSIFNSYKLFH- 243
127191   217 KHANVT-------NINKLSKEQFLSIFNSYKLFH- 243
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