Conserved Protein Domain Family
CH_SYNE2_rpt2

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cd21244: CH_SYNE2_rpt2 
second calponin homology (CH) domain found in synaptic nuclear envelope protein 2 (SYNE-2) and similar proteins
SYNE-2, also called nesprin-2, KASH domain-containing protein 2 (KASH2), nuclear envelope spectrin repeat protein 2, nucleus and actin connecting element protein, or protein NUANCE, is a multi-isomeric modular protein which forms a linking network between organelles and the actin cytoskeleton to maintain subcellular spatial organization. SYNE-2 also acts as a component of the LINC (LInker of Nucleoskeleton and Cytoskeleton) complex, which is involved in the connection between the nuclear lamina and the cytoskeleton. SYNE-2 contains two copies of the CH domain. This model corresponds to the second CH domain. CH domains are actin filament (F-actin) binding motifs.
Statistics
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PSSM-Id: 409093
Aligned: 6 rows
Threshold Bit Score: 201.216
Created: 8-Oct-2019
Updated: 25-Oct-2021
Structure
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Aligned Rows:
 
putative actin
Feature 1:putative actin binding site [polypeptide binding site]
Evidence:
  • Comment:Based on the structure evidence that Homo sapiens filamin-A binds F-actin.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              #   #                                                  # ##  ## #        ##
Q8WXH0        178 RWQMSARKALLLWAQEQCAtye-svnVTDFKSSWRNGMAFLAIIHALRPDLIDMksvkhRSNKDNLREAFRIAEQELKIP 256  human
ETE64338      136 RWKISAKKAVLLWAKEQCDkhg-sinVADFKSSWRNGLAFLAIIHALRPGLVDMekakeRSNKENLREAFQVAEKELSIP 214  king cobra
NP_001352259  184 RFRLSAKKALLLWVRDQCQkvgcpasVRDFKSSWRSGEVFLAILCSLRPDLVDLsqfqtSSNQQNLEKAFYLAEKELGIP 263  zebrafish
XP_014340486  173 KWKMSAKKTLLLWVKELCAscg-svhVTDFKSSWRTGLAFLAVIHALRPELIDLerakgRSNRENLEHAFSIAAQELKIP 251  coelacanth
AAI68625      178 RWKSSARKVLLQWANEQCAghg-slsVTDFKSSWKNGLAFLAIIQSLRPEIVDMdklkgKSSEENLQEAFRLAEQELKIP 256  tropical claw...
XP_007908456  179 KWKVSARKALLLWAQDKAKkvg--ieIHNFNTSWRSGLAFLAIIRALQPGLVDMeklrnRTNRENLEEAFRIAEQHFNIA 256  elephant shark
Feature 1         #######      # ## ##  ##  #   
Q8WXH0        257 RLLEPEDVDVvDPDEKSIMTYVAQFLQYSK 286  human
ETE64338      215 RLLEPEDVDVtSPDEKSIMTYVAQFLQYFK 244  king cobra
NP_001352259  264 RLLEPEDVDVsNPDEKSIMTYIAQFLQYSN 293  zebrafish
XP_014340486  252 RLLEPEDVDIpNPDEKSIMTYVAQFLQYSK 281  coelacanth
AAI68625      257 RLLEPKDVNVpNPDEKSIMTYVAQFLQYAN 286  tropical clawed frog
XP_007908456  257 RLLEAQDVDVvNPDEKSIITYVSQFLQFSK 286  elephant shark

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