Conserved Protein Domain Family
GCD11

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COG5257: GCD11 (this model, PSSM-Id:34854 is obsolete and has been replaced by 444075)
Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Statistics
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PSSM-Id: 34854
Aligned: 16 rows
Threshold Bit Score: -1
Created: 7-Oct-2002
Updated: 7-Oct-2002
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2494301   11 SPIHPAIis-----------rQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCSNeecp 79  fission yeast
3122252    2 RRNPSTFkyiplridfmsevpLPEVNIGLVGHVDHGKTTLVAALSGVWTDRHSEELKRGISIKLGYADATFRKCPE---- 77  Archaeoglobus fulgidus
7674079    8 SGGDKR---------------QPEVNIGVVGHVDHGKTTLVQALTGVWTMRHSEEIRRGMTIKLGYADGEVWECEG---- 68  Aeropyrum pernix
20092490  23 ISDYLHStggn------ynlsQPCVNIGMVGHVDHGKTTLVKALSGVWTDTHSEEVKRGISIRLGYADSPFMKCPK---- 92  Methanosarcina acet...
20094883   1 MDDERf--------------qQAEMNIGMVGHVDHGKTTLTKALSGVWTDTHSEETRRGISIRLGYADTVLTRCPE---- 62  Methanopyrus kandle...
18311686   1 MAFVY-----------------PDAIVSTAGHVDHGKTQTTYALSGVWVMRHSEEIKKAMTIKLGYTQIGIYDCGE---- 59  Pyrobaculum aerophilum
15897345   1 MAWPKV---------------QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCES---- 61  Sulfolobus solfatar...
13542105   2 ISKLKMP--------------QPTVNIGMVGHVDHGKSTLTLALTGVKTDTHSEEIKRGISIKLGYADTPVYKCYD---- 63  Thermoplasma volcanium
13878555   2 ISKLKMP--------------QPSVNIGMVGHVDHGKSTLTLALTGTKTDTHSEEIKRGISIKLGYADTPIYRCYD---- 63  Thermoplasma acidop...
20532138   1 MAD-EHR--------------QPEVNIGLVGHVDHGKTTLVRALSGEWTDQHSEEMKRGISIRLGYADATLRRCPD---- 61  Halobacterium sp. N...
2494301   80 rpgCYRSysSNKEDHPPCEICNSPm--NLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAI 157 fission yeast
3122252   78 ---CEPP--EAYTVEEICPIHGVEt--EILRTVSFVDSPGHEMLMATMLSGAAIMDGAVLVIAANEKCPRPQTKEHLMAL 150 Archaeoglobus fulgidus
7674079   69 ---CGFP--ERFSPEPVCE-CDPQasaSLRRRVSYVDAPGHEILMATMLSGAALMDGALLVVAANEPCPQPQTKEHLVAL 142 Aeropyrum pernix
20092490  93 ---CPAP--QCYTVEKTCPNCGEKt--EEHRIVSFVDAPGHETLMATMLSGAAIMDGAVLVIAANEECPQPQTKEHLMAL 165 Methanosarcina acet...
20094883  63 ---CD-----TYSVEEKCPECGAEt--EWLRRVSFVDSPGHETLMATMLSGAAIMDAAILVIAANEPCPQPQTREHLMAL 132 Methanopyrus kandle...
18311686  60 ---EYYYs-DGILQNGKCP-NGAEp--KLIRRISLLDVPGHEVLVATMVSGAAVVDGALLVVDASQPAPQPQTVEHFAVL 132 Pyrobaculum aerophilum
15897345  62 ---CKKP--EAYVTEPSCKSCGSDdepKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVAL 136 Sulfolobus solfatar...
13542105  64 ---ASG---NPYYTRQPSENC------ELERVISIVDAPGHETLMATMLSGSALMNGALLVIAANEHCPQPQTREHLTAL 131 Thermoplasma volcanium
13878555  64 ---SSG---NVHYTREKGENC------DLERVISIVDAPGHETLMATMLSGSALMNGALLVIAANEHCPQPQTREHLTAL 131 Thermoplasma acidop...
20532138  62 ---CDEP--ECYTVAETCPEHDTAt--EIERTVSFVDAPGHETLMATMLSGAALMDGAVLVVGANEPVPQPQTEEHLMAL 134 Halobacterium sp. N...
2494301  158 EIMQLKHIIILQNKVDLIRESAAEEHYQSILKFIKGTV---AENSPIVPISAQLKYNIDAILEYIVKKIPIPVRDFTTAP 234 fission yeast
3122252  151 QIIGIDKIVIAQNKIDIVSRERVLENYQEIKEFVKGTV---AENAPIIPISAQQKVNMDALIEAIEETIPTPERDLDSPP 227 Archaeoglobus fulgidus
7674079  143 EIIGIKNIVIVQNKVDVVSRERAKESYQEILNFIKGTI---AEGSPIIPVSALKRANIDAVLAAIEKFIPTPPRDLDKPP 219 Aeropyrum pernix
20092490 166 DIIGIKNIVIVQNKIDLVSREKLVENYHQIKEFVKGTV---AENAPIIPISAQQNINIDVLIDALETQIPTPVHKVDKPA 242 Methanosarcina acet...
20094883 133 EIIGTEDVIVVQNKIDLVTPEEAREHYEQIVQFLEEEThldPDKTPIIPVSAQHKANLDVLVEAMYEHFEPPEYDLDAPF 212 Methanopyrus kandle...
18311686 133 DIIGVRHMVVAQNKIDLVTKEKALENYEQIKNFLKGTW---AEKAKVVPISALHRVNIDALVTYLAKEIPKREAELGKPA 209 Pyrobaculum aerophilum
15897345 137 GIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTW---AENVPIIPVSALHKINIDSLIEGIEEYIKTPYRDLSQKP 213 Sulfolobus solfatar...
13542105 132 EIMGIKNIVIVQNKIDLVTRERALESYKEIKAFVKGSI---AENAPIIPVSAYHNTNIDILFEAIEKYIPTPEYNEGSDP 208 Thermoplasma volcanium
13878555 132 EIMGIKNIIIVQNKIDLVTRERAIESYREIKNFVKGSI---AENAPIIPVSAYHSTNIDALFEAIEKYIPSPKFNENDDP 208 Thermoplasma acidop...
20532138 135 DIIGIENIVIAQNKVDLVDAEEARQNYEEIQAFVEGTV---AEDAPVVPVSAEQEINVDLVIDALQTEIATPDRDPSADP 211 Halobacterium sp. N...
2494301  235 RLIVIRSFDVNKPGAEVDDLKGGVAGGSILTGVLRLNDEIEIRPGIVTKDDDgRIRCQPIFSRIISLFAEHNDLKIAVPG 314 fission yeast
3122252  228 LMHVARSFDVNKPGTPPEKLLGGVLGGSLSRGRIRVGDEIEIRPGV---KDE-RGNWNPLFTEVQSIVASGRFVDEATPG 303 Archaeoglobus fulgidus
7674079  220 VMYISRSFDVNRPGTPPERLVGGVVGGSIIQGVFRVGDEIEISPGVAVRKPGgRVEYVRLHTTITSLRFGSIEVEEARPG 299 Aeropyrum pernix
20092490 243 SMLIARSFDINKPGASIDEIRGGVIGGTLTEGVLHPGDELEIRPGIKVTTEG-STKWIPIVTTISSIYAGPTKVEEATPG 321 Methanosarcina acet...
20094883 213 RMYIARSFDVNKPGTRPSDLKGGVIGGAIVQGEVEIGDEIEIRPGIRVERYG-RTEWEPVYTEVVSLHANVTPVERARPG 291 Methanopyrus kandle...
18311686 210 LFSVLRSFNVNPPGTAPDKLRGGVLGGTLLRGVLRVGDEIELRPGLKVDKPK--PGYQPIYTKVLSIEYSGQKVEEARPG 287 Pyrobaculum aerophilum
15897345 214 VMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQG-KVSYEPIFTKISSIRFGDEEFKEAKPG 292 Sulfolobus solfatar...
13542105 209 IMYIARSFDVNKPGTPIDQIKGGIIGGSLTQGSLKIGDEIEIVPGIQNTRGN-KTVWTNVTTEVVSLMAGKYSYDMIKPG 287 Thermoplasma volcanium
13878555 209 IMYIARSFDINRPGTPVSELKGGVIGGSLTQGEFALGDEIEIVPGIQTTKGN-KTVWNNVTTEVVSLMAGKYSYDRIRPG 287 Thermoplasma acidop...
20532138 212 LLYAARSFDINRPGTEWGGLLGGVIGGSLVDGELEAGDELELRPGREVEEGG-KTEWRPVTTDVRSLQAGGEDVDSASPG 290 Halobacterium sp. N...
2494301  315 GLIGVGTTVDPTLCRADRLVGQVLGSKGNLPEVYTELEINYFLLRRLLGVKsgdkNTTKVQKLAKNEVLMVNIGSTSTGG 394 fission yeast
3122252  304 GLVGIATKLDPTLTKSDALVGNVVGHPGNLPDVLTSFTMEVNLLERVVGLD----EEMEVEKIKMNEPLMLAVGTAITLG 379 Archaeoglobus fulgidus
7674079  300 GLVAIGTQLDPSVTKADNLVGNVVGKPGELPEPLTTLRIEHHLLEKVVGMK----EEARVEPIRRGEMLMLSVGTAITLG 375 Aeropyrum pernix
20092490 322 GLLAVGTYLDPTLTKGDSLTGQIAGVPGTLPETRHQFVMELHLLDRVVGVT----REEKINEIKTSEPLMLNIGTATTVG 397 Methanosarcina acet...
20094883 292 GLVGIGTKLDPTMTKADRLSGQVAGEPDTLPPVRHELLLEVELLERVVGTE----EERKVEPIRTNEVLMLTVGTATTVG 367 Methanopyrus kandle...
18311686 288 GLVGIMTGLDPALTKADALAGAVVGKPGTLPPVWTAVEVETRPIPRALA--------EKIEPFKQNEVVLLAVGPATVFG 359 Pyrobaculum aerophilum
15897345 293 GLVAIGTYLDPSLTKADNLLGSIITLADAEVPVLWNIRIKYNLLERVVGAK----EMLKVDPIRAKETLMLSVGSSTTLG 368 Sulfolobus solfatar...
13542105 288 GLAAVGTKLDPFLTKGDAFTGRIAGYIGKVPPISFSMRLEAHLLKRVVGSD----QELNVEPIRAKETLMFTVATANTVG 363 Thermoplasma volcanium
13878555 288 GLAAIGTKLDPFLTKGDAFTGRIAGHVGKVPPVAFSMRLESHLLKRVVGSD----QELNVEPIRPKETLMFTVATANTVG 363 Thermoplasma acidop...
20532138 291 GLLGVGTGLDPSLTKGDALAGQVAGPPGSLPPTWESFEMDVDLLERLVGAA----DGEQIDDISTGEPLMLTVGTATTVG 366 Halobacterium sp. N...
2494301  395 RVMMVKADMAKILLTAPACTEI-GEKVALSRRIEKHWRLIGWAKVVEGK 442 fission yeast
3122252  380 VVTSARDDIVEVKLRRPVCADK-GSRVAISRRVGSRWRLIGAGIIR--- 424 Archaeoglobus fulgidus
7674079  376 VVTRAGKDEIEVQLRRPVVTWP-KARVALSRRIMGRWRLIGWGLIK--- 420 Aeropyrum pernix
20092490 398 IVTSARKNEAQVALKRPISAAV-GAMVAISRRIDSRWRLIGVGVIKS-- 443 Methanosarcina acetivorans C2A
20094883 368 VVTSARDDEIEIKLKQPVCAEE-GDRVAISRRI-QRWRLIGHGVIKG-- 412 Methanopyrus kandleri AV19
18311686 360 VVQAVKKDAITVALKKAVCAEQ-GSKVVVIRQVKNRWIVTNYGTLKGGT 407 Pyrobaculum aerophilum
15897345 369 IVTSVKKDEIEVELRRPVAVWSnNIRTVISRQIAGRWRMIGWGLVEI-- 415 Sulfolobus solfataricus
13542105 364 VVSNVKGTDIEVSLKYPVAAFN-GMRVAIGRRVLNRWRLIGYGVIESLE 411 Thermoplasma volcanium
13878555 364 VVNAMKGSEIEVSLKYPVAAFN-GMRVAIGRRVMNRWRLIGYGIIQSLE 411 Thermoplasma acidophilum
20532138 367 SVTSARDGECEVALKRPVCAPA-GAKIAINRRVGARWRLIGVGTLTESE 414 Halobacterium sp. NRC-1
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