Conserved Protein Domain Family
Rtn

?
COG2200: Rtn (this model, PSSM-Id:32382 is obsolete and has been replaced by 441802)
c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Statistics
?
PSSM-Id: 32382
Aligned: 227 rows
Threshold Bit Score: -1
Created: 7-Oct-2002
Updated: 9-May-2007
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
16124963  138 VHQLEDLIQQMndrlehqlthqVAAASartgardrapqashmlqvvqdalaenrVDLYLQPIVSLP--QRRTVFYESFSR 215  Caulobacter cresc...
15614840    1 --MDPLDVLMN------------KSK----------------------------VLPYYQPIVSAD--NQMVVAYDVLAR 36   Bacillus halodurans
17546062    1 ------------------------------------------------------MSLMHITALARFlgTLPSAPMPDRQL 26   Ralstonia solanac...
16764695    2 IASLDELYHSE---------------------------------------------LFFLPVMDEN---ARLVGLEIIAT 33   Salmonella typhim...
15601833    3 KQQWKTLVEEA-----------IHNDW---------------------------FTFRYQAANSSWg---KTFHREVFSA 41   Vibrio cholerae
15837003  304 qnnegiyayvpsqtpentghlaLLDGQ---------------------------LELAYQPIVEVAg--SDTAQYQVLLR 354  Xylella fastidios...
16123807  392 gsVKWRTLLEQ-----------TLASGg--------------------------PRLYQKPVITVD----GKISHREIIS 430  Yersinia pestis
16124115    3 TNRISALLAPSfa--------aIDQTKrldqtrkfgqikeiertkgqsfwrqcqRRYTFQPIYRTS---GALLAIELLTA 71   Yersinia pestis
16799235    1 ----------------------------------------------------mkFQLYIQPKLDIL--QGNIVEYEILLR 26   Listeria innocua
2506685   859 LDEQWRMIKEN-----------QLMMLa---------------------------HGVASPRIPEA----RNLWLISLKL 896  Escherichia coli
16124963  216 LRDETG---RVMMPAEYLAVAEPEGLmtaIDNLLLFRCVQIVRRLAkQDRK-----------VGIFCNISL-ASLG--DE 278  Caulobacter cresc...
15614840   37 YEGSEG---EESLGWFFHDTSIPDEY---RLELEDHVQTLALEHYL-AGDDq----------LILCLKYNG-VLLAktNG 98   Bacillus halodurans
17546062   27 WRDADGrvqGQFFHCALTSLFEPVWR---LDEAGALIPDGHEALMR-TWTRhgegglnpwkmFSLASDDTTlVELDr-LC 101  Ralstonia solanac...
16764695   34 FAAEDGa-vRMPTELVAPRLSVEEQY---CLFVEKLALLETCQHFF-IQHK-----------LIAWLNLPP-------AI 90   Salmonella typhim...
15601833   42 FEKDGV----RYTANQFLFALEQLNA---SHIFDQYVIERVIQQLEkGELT-----------DPLAINIAQgSISQ---P 100  Vibrio cholerae
15837003  355 LRKADG---NLLSAGLVIPAAEAEGR---IMELDQQVIEQALDILKlHQDTnq--------qLRLFVSQSVrTLIH---E 417  Xylella fastidios...
16123807  431 RIYDGE---QELLAAEFMPLVQLLGL---GERYDRQKIDKIIPLLS-LWPDet--------lAFSISVDSL-LHRP--FQ 492  Yersinia pestis
16124115   72 VFHPSApetRLSPEDYFSAISTGARL---DVVLEQLNMVKQWHQIF-VHHS-----------VLVSINIDG-------QV 129  Yersinia pestis
16799235   27 DDSEVP----RFPLSELEAVLADEEL---YLTFCEWFSDAFFDVLK-KYPN-----------DRFAINIAPqQLFYmeTL 87   Listeria innocua
2506685   897 WSCEG----EIIDEQTFRRSFSDPAL---SHALDRRVFHEFFQQAA-KAVAsk--------gISISLPLSV-AGLS--SA 957  Escherichia coli
16124963  279 SFFP-QFL--EFMQGnKDLAG--AVFFELGQAAFeRRGP--VEARHMARLASLG-FSFSLDKVNDLDVDFQDLAR--ADV 348  Caulobacter cresc...
15614840   99 ENVL-KRL--EFYQE-QGLDLt-KVIIGIKEEQL-DGHLd-DLKHVFMYFQSLG-IRMSIDDVGLSEANLDRLAL--LKP 168  Bacillus halodurans
17546062  102 RLVHtLNYfvRTDARrLVVNVhgRLLAAVAADHGkAFHRavTALGLAPGQFVIQvPSTANDDLGLLLFVVDNYRRngFAV 181  Ralstonia solanac...
16764695   91 SDLL-LLD--SELFS-RAARFp-FLELAINENYP-GLNQgkNNE-TLANLAMHF--PLMLANFGAGEASTKAIFD--GLF 159  Salmonella typhim...
15601833  101 SFIR-WIS--QTLSKhLSVAN--LLHFEIPEGCF--VNEphYTALFCNAVRNAG-ADFGVDNYGRNFQSLDYINE--FRP 170  Vibrio cholerae
15837003  418 GFSD-WII--KNLQE-RNVNGtgLVIDLRLQDAV-IHTIp--LKQLCKQLLEHN-VQFCLSQFESNSEATVLFSE--LPL 487  Xylella fastidios...
16123807  493 RWLR-DTL--LQCKK-S--DRm-RIIFELAEAD--VCQHieEIRQMVRLLRGVG-CKVMASQAGLTVVSTSYIKS--LQV 560  Yersinia pestis
16124115  130 LVAM-QED--HAAKR-LIDAMp-YIRFELLE----HVDTslDT--PFARIAEAD--RLWLDDFGSGLANFTSFIS--WRY 194  Yersinia pestis
16799235   88 HMLD-KLR--SESHRiTIEMTedIFDVPAHKRHLnADDKdaFILNKIKIIHGLG-YHVAVDDVGCGLNSLERVLS--YLP 161  Listeria innocua
2506685   958 TLVN-DLL--EQLEN-SP-LPp-RLLHLIIPAEA-ILDHaeS----VQKLRLAG-CRIVLSQVGRDLQIFNSLKA--NMA 1023 Escherichia coli
16124963  349 KFLKVGAQMMLDQLEEQDGKlvit----slpdLNASDFAALTRRYGIEVIVEKVEAEKQVAEVLDLDIGYGQGHLFGE-- 422  Caulobacter cresc...
15614840  169 NIVKVNLERFHEEAFSQMYQ------------EVHHSLSMLTRKIGATLLFEGISQFNQLNYAWRNGGRYYQGLYLAP-- 234  Bacillus halodurans
17546062  182 AVQASDPAEAGALMVHARPAflkldarrgwqaRHVAGLADSARELGVTLALRRCERPEDLDLARAAGIRYVQGSVLPGae 261  Ralstonia solanac...
16764695  160 KRVMLDKNFIQQRAEMISFE------------PFMHAIVAQISSSCESLMIAGIDTEAMFARAAPLGFSAFQGGLWP--- 224  Salmonella typhim...
15601833  171 KYVKLDYLFTHHLDDERQKF-------------TLTSISRTAHNLGITTIASRVETQTQLDFLSEHFIEVFQGFIVDK-- 235  Vibrio cholerae
15837003  488 NFVRLSQHFGDAHNHPERQK-------------ELPLLIEQAHEHNLHVIGQCIEDAQAATFMWMNGVDLIQGNLFQN-- 552  Xylella fastidios...
16123807  561 EMIKLHPGVVRSINFRYENQ------------LFVESLTGACAGTQTKVFAAEVRTREEWQTLQEKGVYGGQGNFFAP-- 626  Yersinia pestis
16124115  195 EYIKVARDLFTVLQDSEAGN------------RLFFTLVTLMDRYSKGVIVEGVETSQEWAMVQRSDAVAAQGYYLSR-- 260  Yersinia pestis
16799235  162 YIIELKFSLIHFNNIDLEDLl-----------LFIKAWANFAHKNNLDFVVEGIETKETMAILESHGVSIFQGYLVNK-- 228  Listeria innocua
2506685  1024 DYLLLDGELCANVQGNLMDE------------MLITIIQGHAQRLGMKTIAGPVVLPLVMDTLSGIGVDLIYGEVIAD-- 1089 Escherichia coli
16124963  423 -----PRAIr-DAVLAEADPPADFI 441  Caulobacter crescentus CB15
15614840  235 -----PRETfvdrelckeklqkdfh 254  Bacillus halodurans
17546062  262 paepdPLPGplAAMPARASQAQSCV 286  Ralstonia solanacearum
16764695  225 -----PVPv--SQLIKLVQR----- 237  Salmonella typhimurium LT2
15601833      -------------------------      Vibrio cholerae
15837003  553 ------VSK---DLNFNFHDMVL-- 566  Xylella fastidiosa 9a5c
16123807  627 -----P-----TPLNSGK-KKYS-- 638  Yersinia pestis
16124115  261 -----PASf--DGLQALPMLFCG-- 276  Yersinia pestis
16799235  229 -----PFPV---------------- 232  Listeria innocua
2506685  1090 -----A-----QPLDLLVNSSYFAI 1104 Escherichia coli
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap