Conserved Protein Domain Family
RecF

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COG1195: RecF (this model, PSSM-Id:31388 is obsolete and has been replaced by 440808)
Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]
Statistics
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PSSM-Id: 31388
Aligned: 36 rows
Threshold Bit Score: -1
Created: 7-Oct-2002
Updated: 7-Oct-2002
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
15638998  17 LPILQkhsrfvlyqtrtaftslclckrsdslpfltVTAINFRNLAHHTIDISSPEVFFVGNNGQGKTNILEVLYLAAYGN 96  Treponema pallidum
20978635   1 MYIKN------------------------------LYLDNFRNYDNIEIDFNKKVNILTGNNAQGKTNILESIFYCSLGK 50  Clostridium acetobu...
13638413   4 AALLS------------------------------LTLADFRSYERARLETGGRSVYLFGANGAGKTNLLEAISLLSPGK 53  Caulobacter crescentus
13959461   1 MRVLS------------------------------LFLKDFRNYTDLRLELGPEMNSIFGLNAQGKTNLLEALYILSLGR 50  Chlamydia trachomatis
19551253   1 MHIRS------------------------------LELRDYRSWPELKVDLEPGITVFIGRNGFGKTNIVEAIGYLAHLS 50  Corynebacterium glu...
13959503   4 VRLSA------------------------------LSTLNYRNLAPGTLNFPEGVTGIYGENGAGKTNLLEAAYLALTGQ 53  Deinococcus radiodu...
13959479   1 MSLTR------------------------------VSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLAR 50  Pseudomonas aeruginosa
18312382   3 LYFYPe----------------------------tLLIENFKSIRRLELKLRPGVNLLVGPNASGKTNILEAIYSFHKAL 54  Pyrobaculum aerophilum
20978615   4 IFLHS------------------------------LNLENYRNFKNLELKTDNTPIILIGENGSGKTNILEAISLFYPGR 53  Rickettsia conorii
13959493   1 MHITQ------------------------------LVLRHFRCFDAVDFFPLPGLNFFIGENGSGKTSLLEAVHLMGYGR 50  Xylella fastidiosa
15638998  97 SFRTRTESELYATHAR-----SNEYRVKVMYR----GEYTHTVQIFSKNGKKR-IEKNLKKIRTKKELISSIPCILFFHN 166 Treponema pallidum
20978635  51 SHRTNKDKELIKWDKD-----EAFIRLNLSRK----PLDKKIEIKIFKGGKKG-ININSIKLKKISELFGIFNVVMFSPE 120 Clostridium acetobu...
13638413  54 GLRGVSLAEVGRRLPGeavgrAWAVAAEVQSGedapVRIGTGVEQG-GAARRT-VRLEGETVP-PGRLADHVRPIWLTPA 130 Caulobacter crescentus
13959461  51 SFRTSRLTDAIRFGAS-----HFFIEAVFSHK----EVFHTLSIQVDKKGKK--ILFDGAPITKLSELVGLFPVILFSIK 119 Chlamydia trachomatis
19551253  51 SHRVSSDAPLVRAHAE-----NARVSAVAVNQ----GRELAAHLLIKPHAANQ-ASLNRTKVRTPRELLGVVKTVLFAPE 120 Corynebacterium glu...
13959503  54 TDAP-RIEQLIQAGET-----EAYVRADLQQG-----GSLSIQEVGLGRGRRQ-LKVDGVRAR--TGDLPRGGAVWIRPE 119 Deinococcus radiodu...
13959479  51 SFRSARLQPVIQYEEA-----ACTVFGQVMLAn---GIASNLGISRERQGEFT-IRIDGQNARSAAQLAETLPLQLINPD 121 Pseudomonas aeruginosa
18312382  55 FPPGVAQNSILATLAY-----VLEGVRFVLHG----RYVKTLGVWP---------------------------------- 91  Pyrobaculum aerophilum
20978615  54 GLRSAKLANVCKTSED-----HCLVKALLQSKlg-lAEFTTQFKRS---SNRR-ITEYNESKIANNELSKFTSMVWLTPH 123 Rickettsia conorii
13959493  51 SFRGRVRDGLIRHGSE-----NLEIFVDWQETd--lINARRRRAGLSHYGQEWiGRLDGQKIMHLATLCAALAVITFESS 123 Xylella fastidiosa
15638998 167 DLDFVVGTPERRRFFLDQSLSMCNPLYLEYLQKYHALTKTKNREIKE---------------KRVQLLDALDTQIATVGF 231 Treponema pallidum
20978635 121 DLKIVKESPGHRRKFLDMEISKLDHRYYYKLVQYNKILDQRNIMLRNkk------------fLNNDMISVYDEQLSKFGS 188 Clostridium acetobu...
13638413 131 QDRLFLEAASERRRFFDRLVFAGEPAHAANANGYDKAQRERMRLLVDaaet--------gapADAAWLTALEARLAEFGA 202 Caulobacter crescentus
13959461 120 DIAIIEGSPSERRRFLDLLLAQASDKYTEHISLYHKALDQRNASIKAq---------------NQKAISAWNSPLIAYGS 184 Chlamydia trachomatis
19551253 121 DLALVKGEPAERRRYLDDIIATRQPRMAGVKADYDKVLKQRNALLKTatialrrgygteegaAALSTLDTWDGQLARLGA 200 Corynebacterium glu...
13959503 120 DSELVFGPPSGRRAYLDSLLSRLSARYGEQLSRYERTVSQRNAALRG---------------GEEWAMHVWDDVLLKLGT 184 Deinococcus radiodu...
13959479 122 SFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLRHg-------------kLDPASQAAWDRELSLASD 188 Pseudomonas aeruginosa
18312382     --------------------------------------------------------------------------------     Pyrobaculum aerophilum
20978615 124 MEGIFTSGSSDRRKFLDRIVYNFDPKHAELVSKYEYYMHERNKILVEdr-------------rDDNWLKIIEEKMADISN 190 Rickettsia conorii
13959493 124 SYQLINSNAELRRRFLDWGLFHVEPDFLDLWRCYTHVLKQRNSLLKQk--------------EELAMLEAWDQKLSEVGE 189 Xylella fastidiosa
15638998 232 DLVQWRTQLVRDFNVIFTKY--Y-ERLGDLAQVRIEYKPSWS-----------DSSVEEIVHSLYKRRKHDLAMGMSMSG 297 Treponema pallidum
20978635 189 SLIESRIKYLNKLNEKGKII--HsDITKGKEEIEFTYLTHVKg---------rENISEELFSLFKDSYKRDVEKGNTSVG 257 Clostridium acetobu...
13638413 203 LLAQARARTLLALQAEIDGRg-DrPFPLARLGLTGEWERMALega------pfAEIELKLAQALASARARDGAAGRALTG 275 Caulobacter crescentus
13959461 185 LVAFLRNECTKKLNTIFQTLwdNtLKETLSLRYESSLITEESpt--------lNDIASNYYEQLRIANTKDLDLGYTMVG 256 Chlamydia trachomatis
19551253 201 EVMAARFALLNELGPKIYEA--YtTIAPESRPAAVNYKTTIDqglsqfsefdaGIIEATLLTELAAKRQREIERGSSLVG 278 Corynebacterium glu...
13959503 185 EIMLFRRRALTRLDELAREA--N-AQLGSRKTLALTLTES--------------TSPETYAADLRGRRAEELARGSTVTG 247 Deinococcus radiodu...
13959479 189 EIDAYRRSYIQALKPVFEET--LaELVSLDDLTLSYYRG--------------WDKDRDLLEVLASSLLRDQQMGHTQAG 252 Pseudomonas aeruginosa
18312382     --------------------------------------------------------------------------------     Pyrobaculum aerophilum
20978615 191 HIANNRLKTLEFMQQAIDDL--EnEFPKADLSIDGIVEQKILng--------kKNIVSFITAELYQTRSKDKLLGRTSFG 260 Rickettsia conorii
13959493 190 QLTFRRFQYLERLKQRVIPL--IsRITPNLKIHGLNFNHGw------------RRHELPLIDALFISRERDYQYGYTSLG 255 Xylella fastidiosa
15638998 298 PHRDKIHFTRSQALF-IPQASTGQRRLVSLVLRMSQ-AVFYTGVTGKLPVLLMDDVLLELDPEKRERFMMS-LPPYDQLF 374 Treponema pallidum
20978635 258 PHRDDFSIKINGIDA-RSFGSQGQQRTSVLTIKFAS-IQIIKEISSETPVLLLDDVLSELDESRQEYILNS--LEGIQTL 333 Clostridium acetobu...
13638413 276 PHRGDLAIFHVEKDRpAAECSTGEQKALILNLVLAQaARLSRAESAPNPVILLDEVAAHLDLTRRAALADElTALKLQAF 355 Caulobacter crescentus
13959461 257 PHRDELLLTINDLPV-AKFSSEGQKHSLLAVLRFAE-CVYLQEEFCIHPLLCMDDIHACLDQQRLDQLLQL-SNSLGQVV 333 Chlamydia trachomatis
19551253 279 PHRDDVDLMLGDQPA-KGFASHGETWSFALSLRIAE-FNLLKSDGTD-PILILDDVFSELDAGRREKLVGI-AQEVEQVL 354 Corynebacterium glu...
13959503 248 PHRDDLLLTLGDFPA-SDYASRGEGRTVALALRRAE-LELLREKFGEDPVLLLDDFTAELDPHRRQYLLDL-AASVPQAI 324 Deinococcus radiodu...
13959479 253 PQRADLRIRLAGHNA-AEILSRGQQKLVVCALRIAQ-GHLINRAKRGQCVYLVDDLPSELDEQHRMALCRLlEDLGCQVF 330 Pseudomonas aeruginosa
18312382     --------------------------------------------------------------------------------     Pyrobaculum aerophilum
20978615 261 VHKSDFLVKHQKKNIlAKFCSTGEQKAILIAIILAE-MNYAIKLTKIAPILLLDEVFVHLDDKRRQYLIEFlTGLNMQLW 339 Rickettsia conorii
13959493 256 PHRSDWTPQFASIPG-VHVLSRGQGKLITLMCLLAQ-AQDFFDQRGEWPILALDDLASELDQKHQWRVLEMlAEIPAQVL 333 Xylella fastidiosa
15638998 375 CTFLPGEAYRRYGREKT--RVYFVSEGACHE 403 Treponema pallidum
20978635 334 ITCTGIGDIEKYLKNDF--NVFRIDNGRIAE 362 Clostridium acetobutylicum
13638413 356 LTGTDESLFD-HLKGRA--LGVRVGDAGLTT 383 Caulobacter crescentus
13959461 334 TTSTICPDHRSTTS-----CIFHVTQAQVSL 359 Chlamydia trachomatis
19551253 355 ITAAVHDDLPENLKKVL--TAQHTVTVQDTG 383 Corynebacterium glutamicum ATCC 13032
13959503 325 VTGTELAPGAALTLRAQagRFTPVADEEMQA 355 Deinococcus radiodurans
13959479 331 ITCVDPQLLKDGWRTDTpvSMFHVEHGKVSQ 361 Pseudomonas aeruginosa
18312382     -------------------------------     Pyrobaculum aerophilum
20978615 340 VTTTNLEGID-NFATKA--QLIKL------- 360 Rickettsia conorii
13959493 334 ITGTEIPQGLKPYFSVG--AMFHVEHGAITR 362 Xylella fastidiosa
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