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Entrez CDD Structure Protein Help
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COG0488: Uup (model is obsolete and has been replaced with a more recent version: 223562)
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Statistics
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PSSM-Id: 30834
View PSSM: COG0488
Aligned: 159 rows
Threshold Bit Score: 77.6056
Threshold Setting Gi: 15892336
Created: 7-Oct-2002
Updated: 7-Oct-2002
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

COG0488 is not assigned to any domain superfamily.
Sequence Alignment?
Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075551  273 SRDLQVEKLSVSA--WGKLLIKDSELNLINGRRYGLIAPNGSGKSTLLHAIA----------CGLIPTPSS-LDFYLLDR 339
gi 19552636    3 KTHIRLQDLSLSY--TSTPLITKLNITVSSGQCAVIVGENGRGKTTLLRALAref----ppsAGEILTHGT---VAIAHQ 73
gi 19173659    1 -MSSKISSLKHKY---LRKLERFPFESKEEATRVGVGGCTVGYTRGLVPLETpfsmrsvrgrKEIVVPDAP-IQEEYLSS 75
gi 15672881    1 MSNIEFKDLTFGY--GDNLIFNHAQINIDDRWKLGLVGRNGRGKSTLLNLLQgki-----ttDSSITTDKNfVYFPQLLT 73
gi 15827973    1 MITATDLEVRAGA--RILLSSDGPDLRVQPGDRIGLVGRNGAGKTTTLRILAgat----epyAGSVTWTG---EIGYLPQ 71
gi 15829161    1 --MLEVQGLSKIF--SDKKLFENVNLKFTEGNVYGIIGANGAGKSTFLKILAgti----eqtSGTILKEKN-KRISTLGQ 71
gi 15608806    2 AHLLGAEAVHLAY--PTQVVFEAVTLGVNDGARIGIVGRNGDGKSSLLGLLTgql----rpdSGRVTRRSG-LRVNALSQ 74
gi 16263742    1 MPSITLSALSWSK--PDGEHVFSDLDLAFGPERTGLVGRNGIGKTSVLNIIAgtl----rpsSGTVAIQG---RVALARQ 71
gi 15901142   10 NHMIKINHLTITQnkDLRDLVSDLTMTIQDGEKVAIIGEEGNGKSTLLKILMgeals-dftiKGNIQSDYQ--SLAYIPQ 86
gi 19114521  442 eeELVNTDFSLAYg--GRLLLSHTNLHLYRGHRYGVVGHNGCGKSTLLRAIGdyk----venFPSPDEVKT-CFVAHSLQ 514
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075551  340 EYIPNEL------TCVEAVLDINEQERKHLEAMMEDLLDDPDK---------NAVELDTIQTRLTDLET----------- 393
gi 19552636   74 HMPAGDL------SVGEICDEAIRDSKNALEELERAGALLETN---------TAHALDGYQQALDAAEVld--------- 129
gi 19173659   76 SSSGEDTdsegfeGDLHLVIDLFVKGKEIIREAPLTIVRGRKYglvgrngigKTTLLKAIRKRRFGIPRgmriymikqdl 155
gi 15672881   74 EEDFNDKd-----KSKKQNTADKYSVESLSVKITDRNS----------------QLTYYVLNELAEFEQ----------- 121
gi 15827973   72 DPKVGNLd-----VLARDRVLSARGLDVLLTDLEKQQALMAEVadd----daRDRAIRRYGQLEERFLAlgg-------- 134
gi 15829161   72 NHNEFDDe-----IVTDVVIMGNDVLYEIKNKKDAIYN-NPDAte------kDYTLASELEEKYGEMGG----------- 128
gi 15608806   75 TDTLDPNr-----TVGWTLIGDQ-------PEHQWAGNP----------------------------------------- 101
gi 16263742   72 ILRAG-Ad-----ETIADVFGATQAVAVLRRAEKGDASVe--------------------------eLEtad-------- 111
gi 15901142   87 KVPED---------LKKKTLHDYFFLDSIDLDYSILYR------------------------------------------ 115
gi 19114521  515 GEDTSm---------------------------------------------------AILDFVAQDKAll---------- 533
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075551  394 ---ENSD----HRVYKILRGLQFTDEmiAKRTNELSGGWRMRIALARILFIKPT----------LMMLDEPTNHLDLEAV 456
gi 19552636  130 --aWNAE----HRLEKALRSFGAITDr-SRALSELSIGQRYRVRLACLIGGDAD----------ILLLDEPTNHLDRGAL 192
gi 19173659  156 ivdETVEdfagAEAGRILNGLGFTKDmaVKNMRDLSGGWRMRAHLAKAINADPD----------LLLLDEPTNYLDINAL 225
gi 15672881  122 ---WKLEr----ELSLLKVDLEILWR----PFGSLSGGEQTKCLLAILFLDEDN----------FPLIDEPTNQLDLESR 180
gi 15827973  135 -ysAESE----AGRICASLGLPERVL--VQQLCTLSGGQRRRVELARILFAASRagtgasgsgtTLLLDEPTNHLDADSL 207
gi 15829161  129 ---WNAE----NDAQVLLSSLTIDKDkwYLKMKELKANEKVKVLLAKALFGNPD----------ILIMDEPTNHLDLKSI 191
gi 15608806  102 ------R----IRDVVAGL-VSDIAW--DTPVSTLSGGQRRRVQLASLLVGEWD----------VIALDEPTNHLDIQGI 158
gi 16263742  112 -wtVEER----IVSALARLGL-EARA--DTLLNQLSGGQRTRAVLAAAIFSEPD----------FLLLDEPTNNLDRDGR 173
gi 15901142  116 -----------LAEELHFDSNRFAS---DQEIGNLSGGEALKIQLIHELAKPFE----------ILFLDEPSNDLDLETV 171
gi 19114521  534 -tmNVTR----QEAADALHSVGFTAEmqENPVASLSGGWKMKLELARAMLQKAD----------ILLLDEPTNHLDVANI 598
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075551  457 AWLEEYLThEMEGh---TLLITCHTQDTLNEVCTDIIHLYHQ-------------------------KLDYYSG-NYDTF 507
gi 19552636  193 NYLTEAIT-SHKG----VVLVVSHDQALIKDVADFIIDIDSTp-----------------------dGLPRIYHeGFDSY 244
gi 19173659  226 SWLEGKIK-ELKT-----VIIVSHDRNFLNNTTEMILHLNDL-------------------------KIDVYRG-NYESF 273
gi 15672881  181 KIVADYLQ-KKSG-----FIVVSHDRNFLDEVCDHTLAIERQ-------------------------QIVLYQG-NFSTY 228
gi 15827973  208 GWLRDFLR-SHTG----GLVVISHNVELIAAVVNRVWFLDAvlg---------------------kvDVYNMG---WYKY 258
gi 15829161  192 KWLENFLA-NYPN----VVIVVSHDSDFLDEVCSHIVDIDFG-------------------------EAKIFTG-NYSFW 240
gi 15608806  159 TWLADHLR-RRWArntgGLLVVTHDRWFLDEVATTTWEVHDG-------------------------IVEPFEG-GYAAY 211
gi 16263742  174 RAVIGLLS-GWRS----GAIVVSHDRELLEEMDAIIELTSLGtkrygggwsayqaaraveleaaqqsLTLARKT-ADEVD 247
gi 15901142  172 DWLKGQIQkTRQT-----VIFISHDEDFLSETADTIVHLRLVkhr--------------------keAETLVEHlDYDSY 226
gi 19114521  599 AWLEAYLT-SQKNi---TCLIVSHDSSFLDHVCTDIIHYEGVknq--------------------akKLGYYQG-NLSAF 653
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075551  508 LKVRAERD--------VQLAKKARQ-------QEKDMAKLQNKLNMTGSEQQKKa-----kAKVKAMNKKLEKDKQSg-- 565
gi 19552636  245 RRQRSALLet-----wRQDYAAAQTv------QQQLQEDLEHARQRVNSSWKPP--------KGTGKHTRASRAPGv--- 302
gi 19173659  274 VKQRKEKT--------ASARREYES-------QLLVREHMQSFIDRFRYNAKRAs-------LVQSKIKMLAKMP----- 326
gi 15672881  229 EREKQLRD--------DFELAEDEKlrkdisrLKKTSLEKRDWSNQRENVAGATfvdkkvaKKQNQRAKSIEKRMGQeve 300
gi 15827973  259 LDSRATDE--------QRRRRER---------VNAERKATALRTQAAKMGAKAtk-----aVAAQNMLRRADRMMAA--- 313
gi 15829161  241 KESSELAL--------ELRKQSNLK-------KEEQIQKLQSFIARFSSNLSKS-------SQATSRKKALEKIT----- 293
gi 15608806  212 VLQRVERD--------RLTAAAEAK-------RQNLLRKELAWLRRGAPARTC---------KPKFRIEAANQLIAD--- 264
gi 16263742  248 RKARALAE--------RLDKRDASG-------TRKAAKGDMPRILVGRRKSNAEesrgksvELAERRRAGALDAVTA--- 309
gi 15901142  227 SEQRKANFak-----qSQQAANNQRaydktmeKHRRVKQNVETALRATKDSTAGrl---laKKMKTVLSQEKRYEKAa-- 296
gi 19114521  654 VKVKPEAKsyytltatNEKFVFPPPgil--tgVRSNTRLILKMTNASYTYPNAk-------KKSLDNVTVGLSLSSR--- 721
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075551  566 --KVLDEEIIQEKQLVIRFEDCGG--------------GIPSPAIKFQDVSFNYPGG---PTIFSKLNFGLDLKSRVALV 626
gi 19552636  303 -vQALKRAQDALDSKALDVPPAPAp------------lLLPTLKVRPDKPMVDFSDLfvpHRLRLPGSHSVVSGDKIVIT 369
gi 19173659  327 ---TLVAPKQ-DPVIKFTFSSTP----------------AQGALIEFVNVVFSYGCG----KVLGGLSMKINSDSRIVVV 382
gi 15672881  301 nkEKLLKNIEKTEPLIMNFQPSHH-----------------KRLIQFENFSLGFTEK----LLFQPIDFSLKVGEIAAIV 359
gi 15827973  314 --LDEERVIEKVAQI--KFPTP----------------AACGRTPLVAKGLSKTYGS---LEVFTGVNLAIDRGSRVVVL 370
gi 15829161  294 --LDEIKPSSRKYPF-IKWEINR---------------VPGKQILNVENLSYVNKKGe---VLFENVSFSLKLGEKLVII 352
gi 15608806  265 --VPPPRNTVELAKL--AAARLGK--------------DVVDLLGVSVSYQPSG--G---RPVLRDIEWRIGPGERIGIV 321
gi 16263742  310 --AKARIEVLQPFSI--RLPRTEL--------------PAGRQVLAFDGVTAGYDPA---RPIIRDLSFSLVGPRRVSVT 368
gi 15901142  297 --QSMTQKPLEEEQIQLFFSDIQPl-------------PASKVLVQLEKENLSIDDR----VLVQKLQLTVRGQEKIGII 357
gi 19114521  722 --VAILGPNGAGKSTLIKVLIGEVipqegkvfkhpnlrVGYVAQHAFHHLDQHLEKTp-sQYIQWRYAGGQDREVSEKES 798
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075551  627 GPNGAGKTTLIKLILEKVQPS---TGSVVRHHG-LRLALFNQHMg------DQLD----MRL-------SAVEWLRTKFG 685
gi 19552636  370 GDNGAGKSTLIEVLSGVLTPA---SGSVANHAR---TGVLGQES--------LVG---------------------EVP- 413
gi 19173659  383 GANGQGKSTFLKLLAGKLEAT---EGSIIRAPS-LRVGYFAQHHi------DHLRv---NEN--------VLDFMMKSY- 440
gi 15672881  360 GPNGQGKSSIFKYLSGDFSGEh--SGFVQFPQG-IRLSFVRQIY-------DNRG--------------YLKDFATEYQL 415
gi 15827973  371 GLNGAGKTTLLRVL--AGAEKp-dVGRLEPGHG-LRIGYFAQEH-------DTLDn---EDT-------VWQNIRHTAP- 428
gi 15829161  353 GNDDLAKTKLIEVILGIEKPS---SGKVEWGQT-IKTSYFPLNN-------DNYFn---NDL-------SILDWISQFPL 411
gi 15608806  322 GANGAGKSTLLGLI---AGTVqp--------------------------------------------------gVGRVKP 348
gi 16263742  369 GPNGSGKTSLLKVV---TGELppfKG--TVSVN-VPFTLLDQSV-------SILEr---GET-------ILENFKRLNP- 424
gi 15901142  358 GPNGVGKSTLLAKL----------QRLLNDKRE-ISLGFMPQDYh------KKLQ----LDL-------SPIAYLSKTGE 409
gi 19114521  799 RKLTEEDRAQLQRDITVN-GErrrVEALIGRQKlKKSFQYEIKWfgkphkyNTWVsreiLLEngfqkfvQAFDDMESSRE 877
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075551  686 NKP--------EGEMRRIVGRYGLTGKSQ-VIPMGQLSDGQRRRVLFAFLGMT--QPHILLLDEPTNALDIDTIDALADA 754
gi 19552636  414 ------------SIARDHAVKWGLLSVEEsRFALQEFSIGQRRRLDLAMSLAG--NPELLLLDEPSNHLSMHLVSALTEW 479
gi 19173659  441 --T--------QEEARRALASFGLSVDNQ--CIG-TLSGGQKSRLGFAIINGL--SPNLLVLDEPTNHLDMESIDALAEA 505
gi 15672881  416 N----------YELFLANLRKLGMECKQF-SQKIETMSQGQQKKVELARSLSQ--EAELYLWDEPLNYLDVFNREQIIQL 482
gi 15827973  429 --Efg------eqDLRGLLGAFMFSGPQL-DQLAGTLSGGEKTRLALAGLVAS--TANVLLLDEPTNNLDPASRKQVLDA 497
gi 15829161  412 TNEleankdnsDHRMRSFLGRMLFSGETV-FKRVNVTSGGEKARLMFSKMMLE--ESNFIILDQPLDHLDTESIDSVIKG 488
gi 15608806  349 SGWqc------sISTGTIWHRLPTTGSPM-C------------------------------------------------- 372
gi 16263742  425 --Gas------dnACRAALASFRFRADAA-LQRVEALSGGQVLRAGLACALGGsdPPSLLILDEPTNHLDIDSIEAVEAG 495
gi 15901142  410 KEE--------LQKIQSHLASLNFSYPEM-QHQIRSLSGGQQGKLLLLDLVLR--KPNFLLLDEPTRNFSPTSQPQIRKL 478
gi 19114521  878 GLGfre---liPEDIRAHFEDVGLPGDIAdYSPISSLSGGQKVKVVIAACLWN--NPQLLVLDEPTNFLDRDALGGLAVA 952
                        650       660       670       680       690
                 ....*....|....*....|....*....|....*....|....*....|...
gi 19075551  755 LNNFDGGVVFITHDFRLIDQVA-EEIWIVQNg--TVKEFDGEIRDYKMMLKQQ 804
gi 19552636  480 LDTTAAAVIMVTHDRQLLRDTAhWRHIELKS---------------------- 510
gi 19173659  506 LGRFNGAVVCVSHDLSFISSAF-REIYICEDg--SIRRFYGDILEYKKGLGV- 554
gi 15672881  483 LETYHPTMLLVEHDQAFVEKIS-NQIINLKDt--------------------- 513
gi 15827973  498 LRNYQGAVVLVTHDPGAAKALD-PQRVVLLPdgtEDYWS-DEYRDLIELA--- 545
gi 15829161  489 LKEYKSSCIFTTYNRALIKKVA-NVILELKEn-eSYIFR-VNLDEYEKAMGY- 537
gi 15608806      -----------------------------------------------------
gi 16263742  496 LLSYDGALVVVSHDETFLANIG-IGTRVELSt-sRG----------------- 529
gi 15901142  479 FATYPGGLITVSHDRRFLKEVC-SIIYRMTEhglKLVNLEDL----------- 519
gi 19114521  953 IRDWEGGVVMISHNEEFVSALC-PEHWHVE----AGKVTGKGKTAVDDGKFED 1000
Citing CDD
Marchler-Bauer A et al. (2013), "CDD: conserved domains and protein three-dimensional structure.", Nucleic Acids Res. 41(D1):D384-52.
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