Conserved Protein Domain Family
Vps53_N

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pfam04100: Vps53_N (this model, PSSM-Id:282020 is obsolete and has been replaced by 427710)
Vps53-like, N-terminal
Vps53 complexes with Vps52 and Vps54 to form a multi- subunit complex involved in regulating membrane trafficking events.
Statistics
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PSSM-Id: 282020
Aligned: 6 rows
Threshold Bit Score: 478.868
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q5VIR6  39 RADFNAVEYINTLFPTEQSLANIDEVV-------NKIRLKIRRLDDNIRTVVRGQTNVGQDGRQALEEAQKAIQQLFGKI 111 human
Q9VQY8  42 APDFNTVDYINQLFPNEQSLAGIDETI-------QKMQCEVSLIDDNIRSVVRGQTNTGQDGQLALCEAQKVISSLFSHI 114 fruit fly
P34561  29 kPNMSLMAQINELFPTEQSLTQLDSII-------ASVEGEIGELDNELAYLVETNANVSERGEEALKHAQDAMIELEKSI 101 Caenorhabditis elegans
Q0WQF4   1 MDKSSALEYINQMFPTEASLTGVEPLM-------QKIQGEIRRVDASILSAVRQQSNSGTKAKEDLADATRAVEELSHKI 73  thale cress
P87129  16 NNEFKFVETLHELLPEDITYDDLGSLRls---lsERLQESVKKLDANKKTYEDAKLSMGEK----MDDLNSSIVSLLQEL 88  Schizosaccharomyces p...
P47061   5 TVDYDPLEDITNILFSKESLNNIDELIsitrsykKQLQEDILKEENELKEHPKNSA-----------EIEASLRKVFQDF 73  Saccharomyces cerevis...
Q5VIR6 112 KDIKDKAEKSEQMVKEITRDIKQLDHAKRHLTTSITTLNHLHMLAGGVDSLEAMTRRRQYGEVANLLQGVMNVL-EHFHK 190 human
Q9VQY8 115 IDVKTRAERTEEMVKEITRDIKQLDCAKRNLTAAITTLNHLHMLVGGIESLNKLIERRSYGEILNPLQAITEVN-QHFQQ 193 fruit fly
P34561 102 GSIRERTKSSDEIVREMTRDIKQLDIAKRNLTASITTLHHLHILLTGVESLGAWVDKKDYSSIARQLPAILNVL-QLFDA 180 Caenorhabditis elegans
Q0WQF4  74 QEIKSKAEQSEAMVQEICRDIKKLDFAKKNITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLC-NHFEA 152 thale cress
P87129  89 STLQSVAENTQSSIVQMTSEIKNLDFAKQNLATSMTMLKRLQMLVTAYEKLRTLRQNQKFGEAISLMQATLQLL-NFFKK 167 Schizosaccharomyces p...
P47061  74 KETQDVSASTELTISNLTEGISYLDIAKKNLTHSLTLFQNLKILTDSYIQCNELLSQGSFKKMVSPYKIMCSLAeNTFIS 153 Saccharomyces cerevis...
Q5VIR6 191 YMGIPQIRQLSERVKAAQTELGQQILADFEEAF----PSQGTKRPGgpSNVLRDACLVANILDPRIKQEIIKKFIKQHLS 266 human
Q9VQY8 194 FSDIEEIKNLSQSVDKIQVTLAQQITEDFKEAFsakpSSQNQHRLG--LNQLADACKVMSVLDPKVKKELLKWFIAQQLE 271 fruit fly
P34561 181 YKESDQIANLSGQLDKLKASLTIQLAKDLKNAF----------QTGqlSDRITDMCRVAAALEGNVKENFVKWFIEQQLS 250 Caenorhabditis elegans
Q0WQF4 153 YRDVPKITELREKLNNIKQILKSHVFSDFSSL-----GTGKETEETnlLQKLSDSCLVVDALEPSVREELVNNFCSRELT 227 thale cress
P87129 168 YRSVERIASLSRSISEFQKSFYEQVFDTFQSQFkkesGMRGGFSPSs-VQYLNELCRFIDIFAGDPPESVIRWYCRHQLE 246 Schizosaccharomyces p...
P47061 154 YKSLDEINYLLSSISRLKGDTLSKIKQNYNALFs--gGNISEHDTAltMELREGACELLDC-DTSTRAQMIDWCLDKLLF 230 Saccharomyces cerevis...
Q5VIR6 267 EYLVLFQENQDVAWLDKIDRRYAWIKRQLVDYEEK-YGRMFPREWCMAERIAVEFCHVTRAELAKIMRT--RAKEIEVKL 343 human
Q9VQY8 272 EYTHLFHENQDIAWLDKIDKRYAWLKRHLLDFEDK-YGPVFPLDWEVSERITVEFCRQTREQLAQIMAK--RTNEIDVRL 348 fruit fly
P34561 251 EYVIIYADNEEGAWLDKVDDRYKWFVRKLTDFERAgLSNIFPADWHMGRRLTSEFCTVTRDILYRIMTR--RRQDLDWKL 328 Caenorhabditis elegans
Q0WQF4 228 SYEQIF-EGAELAKLDKTERRYAWIKRRIRTNEEI--WKIFPASWHVPYRLCIQFCKQTRKQVESILVN--MKEKPVVAI 302 thale cress
P87129 247 DFMKVFRENEEAGSLENLPRRYTWFKKLLQTYDQL-HKPIFPPHWKVDFRLYEVFCEETKNDLSKLL----KDDRLSLQV 321 Schizosaccharomyces p...
P47061 231 EMKEIFRVDDEAGSLENLSRRYIYFKKILNNFNSK-FADYFLKDWEMAVRLTTTFYHITHKDLQTLLKRefKDKNPSIDL 309 Saccharomyces cerevis...
Q5VIR6 344 LLFAIQRTTNFEGFLAKRFsgctltdgtlkkl---espppstnpfleDEPTPEMEELAtekgdldqp---------kkpk 411 human
Q9VQY8 349 LLFAINKTQAFEQLLSKRFtgv----------------------tlgAQPTDKARVLAeptttdg--------------a 392 fruit fly
P34561 329 LGHAIQHTKMFEALLTKRF--------------------------------PEKDGIS---------------------- 354 Caenorhabditis elegans
Q0WQF4 303 LLLALQSTVEFEKELEKKFgggvptkdieddieeigtwednsqniskIRKKYEKKFAAsqeteengfqqektgnkdlsvt 382 thale cress
P87129 322 FVASLEQTLEFESFIDHRFynt----------------------ksrFNSNFEPKERQ---------------------- 357 Schizosaccharomyces p...
P47061 310 FMTALQSTLDFEKYIDVRF----------------------------SKKIKEPK------------------------- 336 Saccharomyces cerevis...
Q5VIR6 412 apdnpFHGIVSKCFEPHLYVYIESQDKNLGELIDRFVADFKA 453 human
Q9VQY8 393 vgltvFHDQIGQCFKPHLDIYIRSIDRNLSELMDKFVEMSRE 434 fruit fly
P34561 355 -----FEKAIWSVFDTFLDVFINAQEKTLNEFLDTCASKIRs 391 Caenorhabditis elegans
Q0WQF4 383 gagfnFRGMISSCFEPHLTPYIELEEKTLMDDLEKIVQEESW 424 thale cress
P87129 358 -----AYNALSSVFEPHYTLYFNQQSQEFSILFENFALEKQT 394 Schizosaccharomyces pombe 972h-
P47061 337 ---------LSSCFEPYLTLWVSHQNQMMEKKFLSYMSEPKY 369 Saccharomyces cerevisiae S288C
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