Conserved Protein Domain Family
PHD_TCF19

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cd15609: PHD_TCF19 
PHD finger found in Transcription factor 19 (TCF-19) and similar proteins
TCF-19, also termed transcription factor SC1, was identified as a putative trans-activating factor with expression beginning at the late G1-S boundary in dividing cells. It also functions as a novel islet factor necessary for proliferation and survival in the INS-1 beta cell line. It plays an important role in susceptibility to both Type 1 Diabetes Mellitus (T1DM) and Type 2 Diabetes Mellitus (T2DM); it has been suggested that it may positively impact beta cell mass under conditions of beta cell stress and increased insulin demand. TCF-19 contains an N-terminal fork head association domain (FHA), a proline rich region, and a C-terminal plant homeodomain (PHD) finger. The FHA domain may serve as a nuclear signaling domain or as a phosphoprotein binding domain. The proline rich region is a common characteristic of trans-activating factors. The PHD finger may allow TCF-19 to interact with chromatin via methylated histone H3.
Statistics
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PSSM-Id: 277082
Aligned: 8 rows
Threshold Bit Score: 90.6018
Created: 12-Aug-2013
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Zn binding sitehistone H3
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C C H C C CClick to see conserved feature residue pattern help
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         #    #                 #  #    #  #                 #  #
Q9Y242       291 PCAAPCCCLPq-----EETVAWVQCDGCDVWFHVACVGCSIqaa---reADFRCPgC 339 human
XP_002939504 311 PCAWRSCCLPq-----EETVSWVQCDHCDSWYHVVCIGRSLtsl---qdTDFHCG-C 358 western clawed frog
XP_003228386 333 PCAAPRCHLPq-----DEMVAWVQCDGCDAWFHIACVGCSYnav---keEDFRCSaC 381 green anole
XP_792745    538 PCASPTCCRPi-----DSTVTWVQCDDCDDWYHVTCAGCDYnkvk-rvdYQFYCG-C 587 purple urchin
XP_002119220 237 PCSSHQCLFAslhnvdENLISWVQCDSCDQWYHTQCVGCDYeqvk-nstHQFHCGfC 292 Ciona intestinalis
ABQ59656     465 PCAAPRCRLPq-----QDTVQWVQCDDCDAWYHLDCLHCDRknllldpnADFHCG-C 515 Atlantic salmon
ESO90457     463 TCASESCLKPs-----DSTVEWVQCDDCDQWYHTMCVGAIYaavk-dtqMEFHCG-C 512 owl limpet
XP_006820457 311 MCDFYDCRQPq-----DDTVDWVQCDDCDGWYHVHCVGCNVnavk-dphVGFHCG-C 360 Saccoglossus kowalevskii

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