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pfam09598: Stm1_N 
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Stm1
This region is found at the N terminal of the Stm1 protein. Stm1 is a G4 quadraplex and purine motif triplex nucleic acid-binding protein. It has been implicated in many biological processes including apoptosis and telomere biosynthesis. Stm1 is known to interact with CDC13, and is known to associate with ribosomes and nuclear telomere cap complexes.
Statistics
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PSSM-Id: 255441
View PSSM: pfam09598
Aligned: 25 rows
Threshold Bit Score: 29.779
Threshold Setting Gi: 74852739
Created: 29-Mar-2013
Updated: 4-Apr-2013
Structure
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Program:
Drawing:
Aligned Rows:

pfam09598 is a member of the superfamily cl09816.
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3U5G_h         3 NPFDLLGNDV------------E-DAdVVV-LPP-KEIVKSNTSSKKAD----------VP---PPSADPS--------- 45
gi 78111901    7 NLFDLLGEETpaatttekktaaSrDKkRSDsPPVpRELVAQSTTSRKRD---------------PNQPTPRertvnkkad 71
gi 74852739    6 NLFDLLQDDE------------E-----VEkKPT-TKSTQAAAAPVAAK----------KPv-aPKTENKVen-----rs 51
gi 74682051    7 NLFDLLGDDEs----------------PAPaAPK-AAPKKSEATPAQRT----------VPgaaPRGNANRgr------g 53
gi 75180691    5 NPFDLLG-DD------------AeDPsQLAvALSqKVEK------AAAAvq------ppKAakfPTKPAPPsq-----av 54
gi 75097923    5 NPFDLLD-DD------------AeDPsQIVaSKPlKV---------VAPvq------taKSgkmPTKPPPPsq-----av 51
gi 75096971    5 NPFDLLG-DD------------VeDPsQLIiTEQl--KAAAAPTKKAAEkdqgkraqtnKPaqlPSKPAPPaq-----av 64
gi 74614452    7 NLFDLLGNDV------------E--DnTAPaAPA-KIVEKTSTHTTKRN----------SDgvaP-SKAPAq-------g 53
gi 121787718   7 NLYDLLGNDI------------E--GdEPPaPPL-RPVEKTSTHTVKRN----------TDglaP-SKGPVt-------t 53
gi 169617403  29 NTHHPAGNDP------------ElDPdRPAdPPT-RAIEKPVMRHGKRD----------GTd-aP-KPAPErt------g 77
                         90
                 ....*....|....*...
3U5G_h        46 KARKNRPRPSG-NEgAIR 62
gi 78111901   72 QPRRRRQAPQG-NEaFAR 88
gi 74852739   52 PKLGGQSKPKRvNNgEQQ 69
gi 74682051   54 NNNRGAHTVTRdDRvADN 71
gi 75180691   55 RESRNAPQGGR-GGtGGR 71
gi 75097923   52 REARNAPGGGR-GA--GR 66
gi 75096971   65 RESRN--EGGR-GSrGGR 79
gi 74614452   54 SGRR--SNLTG-NEaAFR 68
gi 121787718  54 GNRRGGANVGG-NEaAFR 70
gi 169617403  78 TQTRAKQTASA-NEnAFR 94
Citing CDD
Marchler-Bauer A et al. (2013), "CDD: conserved domains and protein three-dimensional structure.", Nucleic Acids Res. 41(D1):D384-52.
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