Conserved Protein Domain Family
POP1

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pfam06978: POP1 (this model, PSSM-Id:254000 is obsolete and has been replaced by 429227)
Ribonucleases P/MRP protein subunit POP1
This family represents a conserved region approximately 150 residues long located towards the N-terminus of the POP1 subunit that is common to both the RNase MRP and RNase P ribonucleoproteins (EC:3.1.26.5). These RNA-containing enzymes generate mature tRNA molecules by cleaving their 5' ends.
Statistics
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PSSM-Id: 254000
Aligned: 38 rows
Threshold Bit Score: 79.6578
Created: 29-Mar-2013
Updated: 4-Apr-2013
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q4UB06         29 FLQSRAQEIEEVFTLLKQND--KQKRIFQKLPFVMRRRAMSHNPFKIPRNIRAHILKEMAKNTPkielldtvQLLNLKQV 106  Theileria ann...
Q5CUH4         30 LSSGRKDEICRYVNFIKKSN--STKRCFQRLPPAIRRRSMSYNVYRAPRKIRPTLFYEMAKAPP--------RISRKRRK 99   Cryptosporidi...
Q7RN17         72 FFSLKEEDLKIFGNEIKKRN--IFKRCFQRIHKNKRRRCMSFNPYRVPLSCKKVTFDEMLIXEP--------KIMKKKKK 141  Plasmodium yo...
Q54EV0         32 YVNSRKSEINQFLKAITTKK--SNTRAFQSLPRYLRRRTMSHNVYRLPVHLRKRAQNEIEKSAQtnks-eggKLLREKTV 108  Dictyostelium...
Q8SUT6         11 FAQERAKEIQLIEAAIETNR--KKSMMFQRLPFYLRRRLRSHE-KRMKKKKRP--------------------------- 60   Encephalitozo...
Q4PL84         29 FSEARAPELESLHSIVSERL----NKDFRS-KRNKRRRTNSYNNQPAKKRNIKRQKSQSLIGQVs-------GGDHEVKI 96   thale cress
A0CND3         11 FLASRANEIAQLQNTLKSKFlnSTAQPFQVIHKHMRRRAMSHNRYRIPSSLRKHMSGPGLEERDlk----qkTPKCRKHI 86   Paramecium te...
Q23C57         22 FLEARSSEIGYFTQQLNSKKngSNKLAYQMVKKHLRRRAMSHNRYRIPSRIRNRMNVQELDvi--------eKTQDPIKC 93   Tetrahymena t...
XP_001611183   33 FLESRCFEIEELISHVKRSD--KQDRVFQRLPFVLRRRATSHNPFRVPKKLRLHLAREMVRSMP--------------KC 96   Babesia bovis...
XP_001314679   12 LAKRCDPAISEMIKNMENSKp-gHKRVFQKLPNHLRRRAMSYDIKKVPKKMRKSVEEQVAGAA---------QAKARNKP 81   Trichomonas v...
Q4UB06        107 SKRIRK-D------------------------RRRKLNRLQEYQQRCSR------N--KWLETHLYHAKRFKMDSVWGYR 153  Theileria ann...
Q5CUH4        100 ERKKLP-WirrnlllrainrenfcgkeilpfnIRNSSDLSTAFRKKGQRstklpfNqfKWMESHLYHSKRFKMCDAFGYK 178  Cryptosporidi...
Q7RN17        142 KKKIYN-Np-----------------------DMPHDYFFKKYILRAKK------K--KWLETHLYHSKKFKMTDIYGYK 189  Plasmodium yo...
Q54EV0        109 VRKA----------------------------KRRPAYLLRDYERRQKT------F--KWLETHIWHAKRMKMLSIWGHK 152  Dictyostelium...
Q8SUT6         61 ---------------------------------------------RKKD------R--HGLRTHVWYAKRFEMVKTWKTS 87   Encephalitozo...
Q4PL84         97 TRRVKR-R------------------------MELKGNPETGFCTSGDG------T--KRLRTHVWHAKRFTMTKLWGFH 143  thale cress
A0CND3         87 RKRR-----------------------------------DLIFLNRSNK------I--LWMETHLYQVKRMKMINYCGFK 123  Paramecium te...
Q23C57         94 RKH-----------------------------LRKPKLLMNSYIRRSRS------D--KWMETHLWHAKRMRMIKYFQYK 136  Tetrahymena t...
XP_001611183   97 SKRLRKd-------------------------VRRRLNRLEEYRRRCER------N--QWLETHLYHAKRFKMATIWGYR 143  Babesia bovis...
XP_001314679   82 SGRDPNqF------------------------RA---HGRELCKHRNEK------H--KWLETHLWHAKRFHIKDLWGWK 126  Trichomonas v...
Q4UB06        154 LAI--TPTQKSKRRFLRHLKHKCVIHDRSYVEVISVSGE 190  Theileria annulata
Q5CUH4        179 LPI--CSTSKRNRKIYRAFKHEFVVHDSSYLQLFELNGV 215  Cryptosporidium parvum
Q7RN17        190 LAL--KNCDKISRRIFRYHKRKSLIHDMSYVEVLQXSGN 226  Plasmodium yoelii yoelii
Q54EV0        153 IAK--SINGKGVRSTFRASSHFCTLYDCSYYQCIEITGL 189  Dictyostelium discoideum AX4
Q8SUT6         88 VPL--RRRMKSSKFIYK-SQRRGFIFDESYKDVVVYNRP 123  Encephalitozoon cuniculi
Q4PL84        144 LPLglHGRGRGSRDVLKQSRQGVLVHDASYHIAVQLEGP 182  thale cress
A0CND3        124 VPE--KANEKNFRAVHRYFDHGSMIFDASYYQIVEGSIE 160  Paramecium tetraurelia
Q23C57        137 IAR--TPNEKGDRACFRFANHDCTVYDRSYYEFIFIQGS 173  Tetrahymena thermophila SB210
XP_001611183  144 IAF--RSSQKCRRRCIRACKRRCVIHDLSYVRAVGVSGK 180  Babesia bovis T2Bo
XP_001314679  127 IPY--SPTMKGTRSMIRQTSETSTLRDISYTNIIDIKGS 163  Trichomonas vaginalis G3
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