1IN4


Conserved Protein Domain Family
RuvB_N

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pfam05496: RuvB_N (this model, PSSM-Id:253221 is obsolete and has been replaced by 398900)
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Holliday junction DNA helicase ruvB N-terminus
The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Statistics
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PSSM-Id: 253221
Aligned: 110 rows
Threshold Bit Score: 380.253
Created: 29-Mar-2013
Updated: 4-Apr-2013
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1IN4_A        3 EFLTPERTVY--------DSGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASE 74  Thermotoga maritima
Q1IHV6       26 RLVSAIPVEDd-------SSFELKLRPQWLREFIGQPKVKENLAVAIEAARSRGEALDHVLLYGPPGLGKTTLANIIANE 98  Candidatus Korib...
Q46IJ6       21 RLVGPSLLKEel-----kLSQQDSLRPKSFDDFVGQSELKKVLEISVKASLKRGEALDHLMLYGPPGLGKTTMALVIAEE 95  Prochlorococcus ...
Q7V9Q4       21 RLLDPTPSLEeg-----kVRKEDSLRPKCWDEFIGQSALKEVLGISVKAALSRKEALDHVLLYGPPGLGKTTMALVLGNE 95  Prochlorococcus ...
A5GQ68       17 RLVAPEATAAeg-----dGGRDEGLRPRRLADYIGQSELKQVLGIAVEATRLRNDALDHVLLYGPPGLGKTTMALVLAEE 91  Synechococcus sp...
Q8YT32       31 KVLQPEAAIDe------qGKQEESIRPQRFADYIGQKDLKDVLDIAIKAAKSRGEVLDHLLLYGPPGLGKTTMAMILASE 104 Nostoc sp. PCC 7120
Q2JP68       45 ALLQPQAHPG--------EAQEESLRPRTLAEYIGQTELKEVLSIAIAAARARQEPLDHLLFYGPPGLGKTTVAAVLAAE 116 Synechococcus sp...
Q57396       18 DLLSPEVIPQerstspelEQQEASLRPQRLADYIGQRDLKEVLRIAIQAAQGRQEAIDHLLLYGPPGLGKTTLALILAEE 97  Synechocystis sp...
Q4BZT4       18 RLTNTKKNQVq-------DNLEESIRPHSFDEYIGQKDLKDVLSIVIEAAKTRNEPIDHLLLYGPPGLGKTTISLILASQ 90  Crocosphaera wat...
ZP_01731529  42 RLLDPTNKDSd-------ESNGQNIRPHRLEDYIGQESLKSVLNIGIKAALGRQDPLDHLLLYGPPGLGKTTMSLILAEE 114 Cyanothece sp. C...
1IN4_A       75 LQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLV 154 Thermotoga maritima
Q1IHV6       99 MQAQFQQTSGPTLQIKGDLTAILTNVRDKQVLFIDEVHRLQPALEELLYSAVEDYKLDIIIGQGPSARTHTIDVAPFTLV 178 Candidatus Korib...
Q46IJ6       96 LGVKARVTSAPALERPRDIVGLLINIQPRELIFVDEIHRLNRISQELLYPAMEDRRLDLTVGKGTSSRMRSIEIPPFTLV 175 Prochlorococcus ...
Q7V9Q4       96 LGVKCRITSAPALERPRDIIGLLLNLEPNELLFVDEIHRLSKVAEELLYPALEDFRIDLTVGKGTTARTREINLPRFTLV 175 Prochlorococcus ...
A5GQ68       92 LGVSCRIASAPALERPRDIVGLLMNLQPRELLFIDEIHRLNRVAEELLYPAMEDFRLDLTVGAGPAARTRSLELPPFTLV 171 Synechococcus sp...
Q8YT32      105 MGVNYKITSAPALERPRDIVGLLVNLKPGDILFIDEIHRLSRMTEEILYPAMEDYRLDITVGKGSSARIRSIPLSKFTLV 184 Nostoc sp. PCC 7120
Q2JP68      117 MGSQFYMTTAPALESPRDIAGYLVRLKRGDVLFIDEIHRLPKVTEELLYPAMEDFRLDITIGKGRSARITSLPLERFTLI 196 Synechococcus sp...
Q57396       98 MQVRCKITAAPALERPRDITGLLLALQPGDILFIDEIHRLNRLTEELLYPAMEDFRLDITMGKGQSAKVRSLKLAHFTLV 177 Synechocystis sp...
Q4BZT4       91 MEVNCKITAAPALERPRDITGLLVNLKPGDILFIDEIHRLNRLTEELLYPAMEDYRLDITIGKGQAARTRSIPLPKFTLV 170 Crocosphaera wat...
ZP_01731529 115 MGVNCKITAAPALERPRDITGILVNLKPGDVLFIDEIHRLNRLTEELLYPAMEDYRLDITIGKGQAARTRSIPLPRFTLV 194 Cyanothece sp. C...
1IN4_A      155 GATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVK 234 Thermotoga maritima
Q1IHV6      179 AATTRAGLLSAPLRSRFGIVLRLEFYTTEDLKIILKRSAEILNVEIDEGGAAEIATRCRGTPRIANRLLRRVRDYAQVRG 258 Candidatus Korib...
Q46IJ6      176 GATTKPAALSSPMRDRFGITQRLDFYNYLDLENIIKRSAKLINLVISEEASQQLAKRCRGTPRIANRLIRRVRDYAEVYS 255 Prochlorococcus ...
Q7V9Q4      176 GATTKPASISSPLRDRFGITQRLNFYSISDLNRIIQRAADLFGLSLTGDAGLEIARRCRGTPRIANRLLRRVRDYATVQN 255 Prochlorococcus ...
A5GQ68      172 GATTKAGSLSSPLRDRFGLIQRLEFYSCSDLEAIVSRSAQLLQLELAAEAAAEIARRCRGTPRIANRLLRRVRDFASVRG 251 Synechococcus sp...
Q8YT32      185 GATTRVGALTSPLRDRFGLIQKLRFYEVDELSQIVLRSAQLLQTQVTDDGATEIARRSRGTPRIANRLLKRVRDYAQVKS 264 Nostoc sp. PCC 7120
Q2JP68      197 GATTRIGALTSPLRDRFGHVQRLRFYEPHELVQIVLRTARLLNVSTDPEGAAEIARRSRGTPRIANRLFKRVRDYAQVRG 276 Synechococcus sp...
Q57396      178 GATTKVGSLTSPLRDRFGLIQRLRFYEVDELQQIILRTAGILSVSISPTGAEAIAMRARGTPRIANRLLKRVRDYAQVKQ 257 Synechocystis sp...
Q4BZT4      171 GATTKVGALTSPLRDRFGLIQRLKFYEPEELALIIQRTAKLLNTSITEPGSLEIGRRSRGTPRIANRLLRRVRDYIQVKK 250 Crocosphaera wat...
ZP_01731529 195 GATTKVGSLTSPLRDRFGLIERLRFYEPEELALIIERTAKILEVSITQPGAMEIARRSRGTPRIANRLLRRVRDYQVVHK 274 Cyanothece sp. C...
1IN4_A      235 A 235 Thermotoga maritima
Q1IHV6      259 A 259 Candidatus Koribacter versatilis Ellin345
Q46IJ6      256 H 256 Prochlorococcus marinus str. NATL2A
Q7V9Q4      256 Q 256 Prochlorococcus marinus subsp. marinus str. CCMP1375
A5GQ68      252 I 252 Synechococcus sp. RCC307
Q8YT32      265 C 265 Nostoc sp. PCC 7120
Q2JP68      277 D 277 Synechococcus sp. JA-2-3B'a(2-13)
Q57396      258 Q 258 Synechocystis sp. PCC 6803 substr. Kazusa
Q4BZT4      251 F 251 Crocosphaera watsonii WH 8501
ZP_01731529 275 H 275 Cyanothece sp. CCY 0110
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