Conserved Protein Domain Family
Upf2

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pfam04050: Upf2 (this model, PSSM-Id:252337 is obsolete and has been replaced by 461146)
Up-frameshift suppressor 2
Transcripts harbouring premature signals for translation termination are recognized and rapidly degraded by eukaryotic cells through a pathway known as nonsense-mediated mRNA decay. In Saccharomyces cerevisiae, three trans-acting factors (Upf1 to Upf3) are required for nonsense-mediated mRNA decay.
Statistics
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PSSM-Id: 252337
Aligned: 16 rows
Threshold Bit Score: 161.408
Created: 29-Mar-2013
Updated: 4-Apr-2013
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q0UQN6        882 ASASDDELDGPe---dEDVVMPDGEGDDS---SSDSEEE---------SDDDEpk-----qaLSDDEEEQIIVTRPEDER 941  Phaeosphaeria...
O13824        866 RNALTERLQAIsddweEDDTRPVFQGANDgdiSSNEESV---------YLPEDisdesetdeESSGLEESDLLDSEDEDI 936  Schizosacchar...
Q6H470        949 SYSDSGSIDGHe----DEEDLMFEDKSND---ASENEGD---------DEDDGi-------pAGSDEDEGVEVRHKVVQV 1005 Oryza sativa ...
O80955        789 SGSGSVVRDG------QNEELDDGNHERG---SESGDGD---------DYDDGd--------GPGSDDDKFRVRQKVVTV 842  thale cress
Q2USJ1        931 EAESSSSDEGF-----EDDVMPEVDEDGE---SSDEAEA---------SGPNAeq-----ngDSDSEDEQIFVTRQEEER 988  Aspergillus o...
Q5AYD5        953 ESEDSGSDEDL-----EEDAFPEADEEGE---SSDEADV---------S-PNAer-----ndDSESEEEQIFVTRQEEER 1009 Emericella ni...
Q0CIU2        956 DAESSSSDDDL-----EEDAMPEVDEEQE---SSDEAEA---------SAPNAeh-----ndESDSEEEQIFVTRQEEER 1013 Aspergillus t...
GAA86131      920 DAESSSSDEGL-----EEDVMLEEED-QE---SSDEAEV---------SGPNAeq-----ngDSESEDEEIFVTRQEEER 976  Aspergillus k...
XP_001638963  886 ESGESEQDDSEvldvdDEYEMIDMEMDDD---ETAMHRV---------TRG-----------RFLMKYLYINPSTPPKKV 942  starlet sea a...
XP_003988157  964 ggaeteeQSGN-----ESEVNDPEEEEGS---DNDDDEGeeeeeentdYLTDSnk-----enETDEENTEVMIKGGGLKH 1030 domestic cat
Q0UQN6        942 DPEAD--AEFDRELAKLMS-----ESAESRKFE--RKPVFDVPLPMRRAREATVn-------aEDSGNEap---vAPVMP 1002 Phaeosphaeria...
O13824        937 DNEMQlsRELDEEFERLTN-----ESLLTRMHE--KNPGFDVPLPLRASSLGSP---------YVTRNE------ESASE 994  Schizosacchar...
Q6H470       1006 DPKEL--EDFDRELKALLQ-----ESLESRKSEvrPRATLNMMVPMNVLEGSKDpra----veSESGEEtvdeegGSAGG 1074 Oryza sativa ...
O80955        843 DLEEQ--ADFDQELKALLQassesESMEQRKLElrGRPALNMTIPMSVFEGSGKdhhhfgrvvGENGEEvl---dEENGE 917  thale cress
Q2USJ1        989 DPEAE--AEFDREFEKMMA-----ESMDSRKFE--RKGVFDIPLPMKRAPRDAAg-------eSAPETSqpqpqpQPQPQ 1052 Aspergillus o...
Q5AYD5       1010 DPEAE--AEFDREFEKMMA-----ESVESRKFE--RKAVFDIPLPMRRAARDPTa-------eVTAANStpapvsSPAQS 1073 Emericella ni...
Q0CIU2       1014 DPEAE--AEFDREFEKMMS-----ESLESRKFE--RKGIFDIPLPMRRSAREGSa-------aENPANE------QAEAP 1071 Aspergillus t...
GAA86131      977 DPEAE--AEFDREFEKMMA-----ESMESRKFE--RKGVFDIPLPMKRSGREAAl-------eTPPP-E------APKPT 1033 Aspergillus k...
XP_001638963  943 EPTAEd-QEFQQMFERLMV-----DDLHSRRGEslKVPSLDVAVPMHLKGQVRK---------------------AEGAV 995  starlet sea a...
XP_003988157 1031 VPCVEd-EDFIQALDKMML-----ENLQQRSGEsvKVHQLDVAIPLHLKSQLRKg-------pPLGGGE------GEAES 1091 domestic cat
Q0UQN6       1003 SNTVKFSLLSKRGNKTQTRSIDLPSDSTFAVAMRNKQQADKEEQQRIKSLVLN 1055 Phaeosphaeria nodorum SN15
O13824        995 SSHVMFTLLTKRGNKQRSQYLEIPSHSSLVRSTKNQQTEEIMERKRVKEMVLN 1047 Schizosaccharomyces pombe 972h-
Q6H470       1075 GSKVRVKVLMKKGHKQQTKQMFVPGDCSLVQSTKQQEAAELEEKQSIKRRILE 1127 Oryza sativa Japonica Group
O80955        918 QREVQVKVLVKRGNKQQTRQMLIPSDCALVQSTKQKEAAELEEKQDIKRLVLE 970  thale cress
Q2USJ1       1053 PSTMAFSLMTKKGNKQQTRTIDLPSDSSFAVAMRSQQQADREEQQRIKNLVLN 1105 Aspergillus oryzae
Q5AYD5       1074 SGTMAFSLMTKKGNKQQTRTIDLPSDSTFAVAMRSQQQADREEQQRIKNLVLN 1126 Emericella nidulans
Q0CIU2       1072 QRTMAFSLMTKKGNKQQTRTIDLPSDSSFAVAMRSQQQADREEQQRIKSLVLN 1124 Aspergillus terreus NIH2624
GAA86131     1034 NNTMAFSLMTKKGNKQQTRTIDLPSDSSFAVAMRSQQQADREEQQRIKNLVLN 1086 Aspergillus kawachii IFO 4308
XP_001638963  996 DEKMNFVLMLRKGNKQQYRDLEIPISSDLAANMREKQVAEQAEQQELKRLVLD 1048 starlet sea anemone
XP_003988157 1092 ADTMPFVMLTRKGNKQQFKILNVPMSSQLAANHWNQQQAEQEERMRMKKLTLD 1144 domestic cat
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