1X5O


Conserved Protein Domain Family
RRM2_MSSP

?
cd12244: RRM2_MSSP (this model, PSSM-Id:240690 is obsolete and has been replaced by 409690)
Click on image for an interactive view with Cn3D
RNA recognition motif 2 in the c-myc gene single-strand binding proteins (MSSP) family
This subfamily corresponds to the RRM2 of c-myc gene single-strand binding proteins (MSSP) family, including single-stranded DNA-binding protein MSSP-1 (also termed RBMS1 or SCR2) and MSSP-2 (also termed RBMS2 or SCR3). All MSSP family members contain two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), both of which are responsible for the specific DNA binding activity. Both, MSSP-1 and -2, have been identified as protein factors binding to a putative DNA replication origin/transcriptional enhancer sequence present upstream from the human c-myc gene in both single- and double-stranded forms. Thus they have been implied in regulating DNA replication, transcription, apoptosis induction, and cell-cycle movement, via the interaction with C-MYC, the product of protooncogene c-myc. Moreover, they family includes a new member termed RNA-binding motif, single-stranded-interacting protein 3 (RBMS3), which is not a transcriptional regulator. RBMS3 binds with high affinity to A/U-rich stretches of RNA, and to A/T-rich DNA sequences, and functions as a regulator of cytoplasmic activity. In addition, a putative meiosis-specific RNA-binding protein termed sporulation-specific protein 5 (SPO5, or meiotic RNA-binding protein 1, or meiotically up-regulated gene 12 protein), encoded by Schizosaccharomyces pombe Spo5/Mug12 gene, is also included in this family. SPO5 is a novel meiosis I regulator that may function in the vicinity of the Mei2 dot.
Statistics
?
PSSM-Id: 240690
Aligned: 13 rows
Threshold Bit Score: 125.923
Created: 15-Sep-2011
Updated: 1-Feb-2013
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
1X5O_A        26 TNLYISNLPLSMDEQELENMLKpfGQVISTRILRDssg-tsRGVGFARMEStEKCEAVIGHfNGKFIktppg---vsapT 101 human
BAB20902     169 TNLYLSGLPPNFNEHDLEQMLLpyGQVISTRILRDsng-vsKGVGFARMESkEKCEVIISKfNGKYLtggn-----thsT 242 Halocynthia ror...
Q15434       135 TNLYISNLPLSMDEQELEGMLKpfGQVISTRILRDtsg-tsRGVGFARMEStEKCEAIITHfNGKYIktppg---vpapS 210 human
Q6XE24       140 TNLYISNLPISMDEQELENMLKpfGHVISTRILRDang-vsRGVGFARMEStEKCEVVIQHfNGKYLktppg---ipapS 215 human
EFX85883      85 TNLYLANLPAHITEQDLHDMLYkyGTVISTRVLRDggs-qsRGVGFARMESrEKCDEIISIfNGKLLsg---------sT 154 common water flea
XP_001641651  94 TNLYIQNLPQNCDEAMLENMFSkyGKVISTRILRDkdt-nsKGVGFARMESaEKCEQVIKDfNKKMLpgev----slrcI 168 starlet sea ane...
XP_002436024  93 TNLYIANLPLYMVEQDLEQMLSnhGNVISTRILRDnns-qsRGVGFARMESkEKCEHIIATfNTKVLpgqcaltllagsK 171 black-legged tick
Q8MSV2       310 TNLYIANLPPHFKETDLEAMLSkyGQVVSTRILRDqqm-nsKGVGFARMESrEKCEQIIQMfNGNTIpg---------aK 379 fruit fly
17554534     162 TNLYIANLPLDFTEQMLETELNkfGMVISTRILRTpdn-qsRGVGFARMDSkEKCEVIISAlNGGRFdtm------skeG 234 Caenorhabditis ...
Q2L4W6       384 TNLYISNLPLHWNESDISTLFKp-SKIISNRVLRDske-qsRGVGFARMQDrKTAEDIINKfNNFVLdp---------aL 452 Schizosaccharom...
XP_002737057 290 TNLYLSNLPIHMDEKDLESLLSpyGQVISTRILRDcqtnmsRGVGFARMESkEKCEHIITKfNGNYLpg---------qL 360 Saccoglossus ko...
EAA35208     343 TNLYLSNLPKRLTEAELNAIFVg-YHIVSSKILRDsmg-nsRGVGFARFETrDECEDVIKKfHGAPIge---------eG 411 Neurospora cras...
EER38562     377 TNIYCTNVPIDWVEADLRRHFQp-YQVVSEKISRDektgvsKEVGFARFESrDIAEKVLSEfHNVTAk----------dG 445 Ajellomyces cap...
1X5O_A       102 EPLLCKFSG 110 human
BAB20902     243 EPLLCKFAD 251 Halocynthia roretzi
Q15434       211 DPLLCKFAD 219 human
Q6XE24       216 EPLLCKFAD 224 human
EFX85883     155 QPLLVKFAD 163 common water flea
XP_001641651 169 QELVVKFAD 177 starlet sea anemone
XP_002436024 172 EPLLVKFAD 180 black-legged tick
Q8MSV2       380 DPLLVKFAD 388 fruit fly
17554534     235 PALLIKQAD 243 Caenorhabditis elegans
Q2L4W6       453 PPLQIRFAD 461 Schizosaccharomyces pombe 972h-
XP_002737057 361 EPLLCKFAD 369 Saccoglossus kowalevskii
EAA35208     412 MLMQVRYAD 420 Neurospora crassa OR74A
EER38562     446 VKLLLRFAD 454 Ajellomyces capsulatus H143
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap