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TIGR01632: L11_bact 
50S ribosomal protein L11
This model represents bacterial, chloroplast, and most mitochondrial forms of 50S ribosomal protein L11 [Protein synthesis, Ribosomal proteins: synthesis and modification].
Statistics
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PSSM-Id: 233500
View PSSM: TIGR01632
Aligned: 14 rows
Threshold Bit Score: 192.948
Threshold Setting Gi: 19699028
Created: 11-Sep-2012
Updated: 16-Jan-2013
Structure
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Aligned Rows:

TIGR01632 is classified as a model that may span more than one domain.
TIGR01632 is not assigned to any domain superfamily.
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730814    4 AAKNVIVKLIVGAGQAAPsppvGPALGSKGIKAIDFCKEFNARSANyQPGVPVPVLITIKPDRTFTFEMKSPPTGYLLLK 83
gi 19699028   7 KEITRIAKLELIGGQAKP----GPALASVGINMGEFTKQFNEKTKD-RMGDVVPVIITAFNDKSFLFELKTTPVTVLLKK 81
gi 3914675    4 KKAISWIKLQVPAAQAAPgakiGQALGPHGVSGPQFVKEFNERTAKmDPGIVVPVIITVYSDKSFSFIVKTPPASILIKK 83
gi 2500249    3 KKVVGEIKLQIPAGKANPsppvGPALGQRGVNIMEFCKAFNERTKD-MGSFNIPVIITVYQDKSFTFITKKPPVTDLIKK 81
gi 6919959    4 KKIIKIIKLQIPGGKANPappiGPALGAAGVNIMGFCKEFNAATQD-RPGDLLPVVITVYSDKTFSFVMKQSPVSSLIKK 82
gi 11134505   3 KKIQSYIKLQVSAGAANPsppiGPALGQKGVNIMEFCKLFNKKTENiEKGLPIPVIITVYSDRSFTFITKTPPASVLLKK 82
gi 6225956    4 KAIKGYINLIIPAAGATPappiGPALGQRKVNIAAFCKDFNDATNGmEKGVPLPTVITVYEDSSFSFKVKTPPASYFLKK 83
gi 144456     3 KVVSRIVKLQIESGSAKPsppvGPAIGQAGIPIMAFCKAFNAATEGmEKGIPIPTTVTCYKDKSFTFTMSQPPVSFFLKK 82
gi 16124894   3 KKILGYIKLQVKAGSATPsppiGPALGQRGVNIMGFCKEFNARTENvEKGTPLPTVITVYQDKSFTFITKTPPATHYLKQ 82
gi 34540217   3 KEVAGQIKLQIKGGAANPsppvGPALGAKGINIMEFCKQFNARTQD-KAGKVLPVVITYYADKSFDFIVKTPPVAIQLLE 81
                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1730814   84 ALKMDKGHGQPNVGtmlgsapakgptrALGELSLKHVYEIAKIKKSDerHSLLEMEGIVKSIVGVAKSMGIKVVP 158
gi 19699028  82 AAKIESGAKNPKTE-------------KVGKISKAEALKIAEYKMAD--LNAYDTEAALRMIAGTAKQMGLEIEG 141
gi 3914675   84 AIGIESGSKKSNTD-------------KVGTISKEKLMEIARIKMSD--LNAKSESAAFKIIAGSARSMGVEVEK 143
gi 2500249   82 ASGVEKGSDNPLKN-------------KIAKLTHKQVEEIAQLKMED--LNTSTMEAAKKIVMGSARSMGVEVVD 141
gi 6919959   83 ALGLESGSKIPNRN-------------KVGKLTRAQITVIAEQKMKD--MDVVLLESAERMVEGTARSMGVDVE- 141
gi 11134505  83 LSGIKKGSSKNKSE-------------KIGKINRSQIKEIAIIKNND--MTGSNIENMMRSIEGTAKSMGLIIEG 142
gi 6225956   84 YAKITKGSSATKKEa------------MVGKVTIDDCREIAKLKISD--LNTKNIEAATKIICGSAASMGLEVVG 144
gi 144456    83 EVGIKSGSKLPGKE-------------SCGSITRENIRKIAQLKMQD--MGAIDIEGAMRMVEGSACSMGISVVD 142
gi 16124894  83 ITGLKSGAKLTGRE-------------TVGEVTRTQLREIAEKKMKD--LNANDLEAAAKIIEGSAKAMGLKIVE 142
gi 34540217  82 ASKQKSGSAEPNRK-------------KVAEITWEQVRTIAEDKLVD--LNCFDIKAAMKMVAGTARSMGIAIKG 141
Citing CDD
Marchler-Bauer A et al. (2013), "CDD: conserved domains and protein three-dimensional structure.", Nucleic Acids Res. 41(D1):D384-52.
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