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pfam09379: FERM_N 
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FERM N-terminal domain
This domain is the N-terminal ubiquitin-like structural domain of the FERM domain.
Statistics
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PSSM-Id: 220215
View PSSM: pfam09379
Aligned: 34 rows
Threshold Bit Score: -1
Threshold Setting Gi: 0
Created: 22-Dec-2011
Updated: 16-Jan-2013
Structure
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Program:
Drawing:
Aligned Rows:

pfam09379 is not assigned to any domain superfamily.
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2KC2_A         16 IRMLDGT-VKTIM-----VDDSKTVTDMLMTICARIGITNHDEYSL-VrelmEEKKdegtgTLRkdktllrdekkmeklk 88
gi 17432978   222 VTLLDGT-EYSCD-----LEKHAKGQVLFDKVCEHLNLLEKDYFGLlF----QESP-----EQK---------------- 270
gi 122109634   39 VLFLDDI-THTFR-----LEKRAKGSELLDQVFQYLELSERDYFGLlFp---QKPG-----DVV---------------- 88
gi 122076826   55 VLLLDGA-HLNIV-----VPRNAVGSELYEEVFYSLDLEERDYFGLqY----TDPF-----NVQ---------------- 103
gi 93204574    48 VKLLDNT-MEIFD-----IEPKCDGQVLLTQVWKRLNLVECDYFGMeFq---NT-Q-----SYW---------------- 96
gi 82274279    54 VHGLDDS-QEFFD-----MDPKALGQSLLSEVFFRGNLIESDYFGLeFq---NI-L-----MNW---------------- 102
gi 82253527    11 VHLLDDR-KLELL-----VQPKLMAKDLLDLVASHFNLKEKEYFGIaY----TDET-----GHF---------------- 59
gi 6093475     15 VLLLDES-KLILTtqqqgIKKSTRGSVVLDYVFSHVNLAETEYFGVrY----CDRS-----HQT---------------- 68
gi 82269918    20 IRLLDDS-EISCS-----IQRDTRGQFLLDHVCNHYNLLEKDYFGIrY----VDPE-----KQR---------------- 68
gi 74839833    16 VRLLEDLdVLECE-----FQPHHKGCFLLDYVCEQLEITEKDYFGLrF----VDSA-----KQR---------------- 65
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
2KC2_A         89 qklhtddelNWLDHGRTLREQGVE----------EHETLLLRRKFFY 125
gi 17432978   271 ---------NWLDPAKEIKRQLRN----------LPWLFTFNVKFYP 298
gi 122109634   89 ---------RWVDAQKQFKKQCSSvsl----dndAVPLLEFRVKFFV 122
gi 122076826  104 ---------HWLDPTKKVAKQVAIg---------PPFTLRFRVKFFT 132
gi 93204574    97 ---------IWLEPMKPIIRQI-Rr--------pKNVVLRLAVKFFP 125
gi 82274279   103 ---------VCKEAFVFTHTHT-Ht--------cTFIFEKTCMDKIA 131
gi 82253527    60 ---------SWLQLDRRVLELDRRvlehefpkksGPIVLYFCVKFYI 97
gi 6093475     69 ---------FWLDPSKTLAEHKDLia------tgPPYTLYFGVKFYA 100
gi 82269918    69 ---------HWLEPNKPVARQMKLa--------qQPFTMCFRVKFYP 98
gi 74839833    66 ---------HWLDLAKTIIKQVKDv---------DPLVLSFRVKFYP 94
Citing CDD
Marchler-Bauer A et al. (2013), "CDD: conserved domains and protein three-dimensional structure.", Nucleic Acids Res. 41(D1):D384-52.
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