1M7X,2VR5,1JD7,1TMQ,1QHP,1TCM,3DHP


Conserved Protein Domain Family
Alpha-amylase_C

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pfam02806: Alpha-amylase_C (this model, PSSM-Id:217237 is obsolete and has been replaced by 426991)
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Alpha amylase, C-terminal all-beta domain
Alpha amylase is classified as family 13 of the glycosyl hydrolases. The structure is an 8 stranded alpha/beta barrel containing the active site, interrupted by a ~70 a.a. calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain.
Statistics
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PSSM-Id: 217237
Aligned: 247 rows
Threshold Bit Score: -1
Created: 21-Dec-2011
Updated: 16-Jan-2013
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1M7X_C 517 WLVVDDKERSVLIFVRrdkeGNE--IIVASN-FTPV-PRhDY-RFGINQ-PGKWREIL----NTDSMHYHGSnagnggtV 586 Escherichia coli
Q84AP9 511 E-----KNSRQIAYLRe---DDQdtILVVMN------NDkAGhTLTLPVrHAQWTHLW----NDDVLTAa---------- 562 Paenibacillus sp. A11
Q9HHB0 554 IIHVLGGSGGLLAYTR----GYMdeVLVIAN--NDAsTPqSY---ELP--PGNWTLIY----ASNNWSE----------V 608 Desulfurococcus mucosus
Q9P9A0 661 Y----TSKEGVLAFFR----GHDdeVLVIANn--------VPkDTSIPLpPGKWKQIW----PEGEKIF----------- 709 Thermococcus aggregans
Q8L3E0 431 W-----INDDVLIYERs---FNGdyLLVAINkNVNQaYTiSGlLTEMP--AQVYHDVL----DS--LLDGQS-------L 487 Bacillus clarkii
Q7X3T0 410 W-----INDDVLIYERh---FGEnyALIAINrNLNTsYNiQGlQTEMP--SNSYDDVLdgllDGQSIVVDN--------- 470 Bacillus agaradhaerens
Q53I75 444 W-----INSDVFVYERe---FGDnvVLVAIN-RSLDwYDvSGlQTSLP--EGTYDDALggtlDGFSTTVNT--------- 503 Haloferax mediterranei
Q48T01 458 W-----ISDHVLVFERk---FGNhvALVAINrDQTNgYTiTNaKTALP--QNSYKDKLegllGGQELIVGA--------- 518 Streptococcus pyogene...
Q8U3I8 396 Y-----VDYNTWIFERk---FGShkILVALNk-----GPdKNiTISLNWtDGTYIDII----EGAILKV----------- 447 Pyrococcus furiosus
Q8X268 435 W-----------AFERt---FGNhsLLVVMNk-----GPaVNlTFSVDWpDGNYRDAL----YGGEMVV----------- 480 Thermococcus kodakare...
1M7X_C 587 HsdeIaS-HGRqhsL-SLTLPPLATIWLVReaE 617 Escherichia coli
Q84AP9 563 --------HGQ---L-TVKLPAYGFAV--LkaS 581 Paenibacillus sp. A11
Q9HHB0 609 S---V---EHN-----TVTVPPLTALILVRntV 630 Desulfurococcus mucosus
Q9P9A0 710 --------------EkEITVPGLEVLV--LvkT 726 Thermococcus aggregans
Q8L3E0 488 A---V-KeNGTv---dSFLLGPGEVSV--WqhI 511 Bacillus clarkii
Q7X3T0 471 --------KGG---VnEFQMSPGEVSV--WefE 490 Bacillus agaradhaerens
Q53I75 504 --------DGS---IdTFSVGPQTVCV--WehT 523 Haloferax mediterranei
Q48T01 519 --------DGT---IsSFELGAGQVAV--WtyE 538 Streptococcus pyogenes serotype M28
Q8U3I8 448 --------KEG---QgEIKLPRYSFYV--FhvE 467 Pyrococcus furiosus
Q8X268 481 --------SGG---KaSVYLPRDSVYV--FhiE 500 Thermococcus kodakarensis KOD1
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